Initializing AMReX (25.01-3-g3a34576c9930)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.01-3-g3a34576c9930) initialized Starting run at 06:38:54 UTC on 2025-01-07. Successfully read inputs file ... Castro git describe: 25.01 AMReX git describe: 25.01-3-g3a34576c9 Microphysics git describe: 25.01-9-gbb3b040b reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014611083 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.326204372 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.327228367 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.301439348 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.30093067 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.350768895 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.300889582 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.284639078 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.286174724 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.289420742 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.295396593 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007836095 seconds Ending run at 06:38:57 UTC on 2025-01-07. Run time = 3.250688435 Run time without initialization = 3.076890466 Average number of zones advanced per microsecond: 0.852 Average number of zones advanced per microsecond per rank: 0.106 TinyProfiler total time across processes [min...avg...max]: 3.2497 ... 3.2502 ... 3.2507 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0183 2.1045 2.1772 66.97% Gravity::make_radial_gravity() 21 0.2852 0.2939 0.309 9.51% check_for_negative_density() 10 0.03161 0.1089 0.1999 6.15% Castro::initData() 1 0.03711 0.07283 0.1108 3.41% Castro::estTimeStep() 21 0.02236 0.06732 0.1062 3.27% amrex::Copy() 193 0.06447 0.0785 0.08678 2.67% FabArray::ParallelCopy_finish() 41 0.04125 0.05081 0.08409 2.59% FabArray::setVal() 143 0.06138 0.06841 0.07691 2.37% Castro::reset_internal_energy(Fab) 1008 0.04473 0.04613 0.04842 1.49% Castro::normalize_species() 62 0.04455 0.04546 0.04677 1.44% FabArray::ParallelCopy_nowait() 41 0.03536 0.04051 0.04285 1.32% StateData::FillBoundary(geom) 41 0.0291 0.03229 0.03566 1.10% FillPatchIterator::Initialize 41 0.02693 0.03183 0.03412 1.05% Castro::construct_new_gravity_source() 10 0.02282 0.02479 0.02786 0.86% Gravity::interpolate_monopole_grav() 21 0.02683 0.0272 0.02775 0.85% Castro::computeTemp() 63 0.01769 0.01837 0.01883 0.58% Castro::initialize_do_advance() 10 0.01208 0.01642 0.01827 0.56% Castro::initialize_advance() 10 0.005296 0.01068 0.01385 0.43% FabArray::Saxpy() 20 0.01082 0.01256 0.01358 0.42% VisMF::Write(FabArray) 2 0.009214 0.009927 0.0134 0.41% MultiFab::contains_nan() 20 0.01054 0.01137 0.01248 0.38% FabArray::setDomainBndry() 41 0.007581 0.009812 0.01141 0.35% Amr::writePlotFile() 2 0.007421 0.009777 0.01037 0.32% Castro::construct_old_gravity_source() 10 0.007081 0.009552 0.01012 0.31% Castro::initMFs() 1 0.006653 0.007226 0.00758 0.23% Castro::construct_new_source() 50 0.005314 0.005952 0.006287 0.19% main() 1 0.004213 0.004663 0.005218 0.16% Gravity::get_new_grav_vector() 11 0.002821 0.003577 0.004097 0.13% Amr::coarseTimeStep() 10 0.001489 0.002428 0.003143 0.10% Gravity::get_old_grav_vector() 10 0.00153 0.002003 0.002506 0.08% Castro::finalize_do_advance() 10 0.0004906 0.0009609 0.001238 0.04% AmrLevel::FillPatch() 41 0.0007711 0.001091 0.001197 0.04% Amr::timeStep() 10 0.0001714 0.000218 0.0003523 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002776 0.0002979 0.0003305 0.01% Castro::do_advance_ctu() 10 0.0001393 0.0001552 0.0001817 0.01% Castro::clean_state() 62 0.0001438 0.0001528 0.0001646 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001004 0.0001076 0.0001149 0.00% Castro::do_old_sources() 10 6.935e-05 8.918e-05 0.0001072 0.00% StateDataPhysBCFunct::() 41 8.794e-05 0.000101 0.0001067 0.00% FabArray::ParallelCopy() 41 7.864e-05 9.232e-05 0.0001007 0.00% Castro::Castro() 1 5.885e-05 7.636e-05 8.891e-05 0.00% Castro::construct_old_source() 50 5.307e-05 7.29e-05 8.154e-05 0.00% Castro::do_new_sources() 10 5.427e-05 6.182e-05 7.377e-05 0.00% FillPatchSingleLevel 41 6.187e-05 6.515e-05 7.069e-05 0.00% Amr::FinalizeInit() 1 4.203e-06 1.376e-05 7.064e-05 0.00% Castro::apply_source_to_state() 20 4.106e-05 4.969e-05 5.756e-05 0.00% Castro::subcycle_advance_ctu() 10 4.252e-05 4.747e-05 5.22e-05 0.00% Amr::defBaseLevel() 1 3.081e-05 3.791e-05 4.83e-05 0.00% Castro::construct_new_gravity() 10 3.071e-05 3.673e-05 4.77e-05 0.00% Castro::advance() 10 3.34e-05 4.237e-05 4.76e-05 0.00% Castro::construct_old_gravity() 10 3.267e-05 3.863e-05 4.287e-05 0.00% Castro::expand_state() 10 2.104e-05 2.434e-05 2.969e-05 0.00% Castro::check_for_nan() 20 2.262e-05 2.401e-05 2.641e-05 0.00% Castro::post_timestep() 10 1.366e-05 1.657e-05 1.897e-05 0.00% Castro::post_init() 1 9.086e-06 1.229e-05 1.644e-05 0.00% Castro::computeNewDt() 9 9.141e-06 9.92e-06 1.053e-05 0.00% Amr::InitializeInit() 1 2.833e-06 3.622e-06 6.412e-06 0.00% Castro::computeInitialDt() 2 3.273e-06 4.036e-06 5.342e-06 0.00% Amr::init() 1 2.174e-06 2.525e-06 2.939e-06 0.00% Amr::initialInit() 1 1.446e-06 1.819e-06 2.41e-06 0.00% Other 261 0.01501 0.01857 0.02008 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.25 3.25 3.251 100.00% Amr::coarseTimeStep() 10 3.064 3.064 3.064 94.25% Amr::timeStep() 10 3.051 3.052 3.053 93.92% Castro::advance() 10 3.036 3.036 3.037 93.42% Castro::subcycle_advance_ctu() 10 2.955 2.963 2.974 91.49% Castro::do_advance_ctu() 10 2.955 2.963 2.974 91.49% Castro::construct_ctu_hydro_source() 10 2.23 2.235 2.239 68.89% Gravity::make_radial_gravity() 21 0.3011 0.31 0.3226 9.92% AmrLevel::FillPatch() 41 0.1855 0.1981 0.2083 6.41% Gravity::get_new_grav_vector() 11 0.2061 0.2073 0.2082 6.41% check_for_negative_density() 10 0.03161 0.1089 0.1999 6.15% Castro::construct_old_gravity() 10 0.1778 0.1841 0.1939 5.96% Gravity::get_old_grav_vector() 10 0.177 0.1835 0.1932 5.94% Castro::construct_new_gravity() 10 0.1843 0.185 0.1861 5.73% FillPatchIterator::Initialize 41 0.1532 0.1657 0.1835 5.64% Amr::init() 1 0.1732 0.1734 0.1734 5.34% Castro::initialize_do_advance() 10 0.157 0.1651 0.1703 5.24% Amr::initialInit() 1 0.1584 0.159 0.1592 4.90% FillPatchIterator::FillFromLevel0() 41 0.1142 0.1241 0.149 4.58% FillPatchSingleLevel 41 0.1141 0.124 0.1489 4.58% Amr::InitializeInit() 1 0.05905 0.09429 0.1329 4.09% Amr::defBaseLevel() 1 0.05905 0.09429 0.1329 4.09% Castro::clean_state() 62 0.1132 0.1156 0.1198 3.68% FabArray::ParallelCopy() 41 0.08176 0.09151 0.1196 3.68% Castro::expand_state() 10 0.1014 0.1118 0.1183 3.64% Castro::initData() 1 0.04083 0.07667 0.1145 3.52% Castro::estTimeStep() 21 0.02236 0.06732 0.1062 3.27% Amr::FinalizeInit() 1 0.02611 0.06472 0.1 3.08% Castro::do_old_sources() 10 0.0919 0.09398 0.09581 2.95% amrex::Copy() 193 0.06447 0.0785 0.08678 2.67% FabArray::ParallelCopy_finish() 41 0.04125 0.05081 0.08409 2.59% Castro::initialize_advance() 10 0.0579 0.0698 0.07731 2.38% FabArray::setVal() 143 0.06138 0.06841 0.07691 2.37% Castro::computeInitialDt() 2 0.002116 0.04069 0.07591 2.34% Castro::do_new_sources() 10 0.06047 0.06487 0.07235 2.23% Castro::computeTemp() 63 0.0631 0.0648 0.06751 2.08% Castro::reset_internal_energy(MultiFab) 63 0.04503 0.04643 0.04873 1.50% Castro::reset_internal_energy(Fab) 1008 0.04473 0.04613 0.04842 1.49% Castro::normalize_species() 62 0.04455 0.04546 0.04677 1.44% FabArray::ParallelCopy_nowait() 41 0.03546 0.0406 0.04294 1.32% StateDataPhysBCFunct::() 41 0.02919 0.03239 0.03577 1.10% StateData::FillBoundary(geom) 41 0.0291 0.03229 0.03566 1.10% Castro::construct_new_source() 50 0.02865 0.03074 0.03405 1.05% Castro::construct_new_gravity_source() 10 0.02282 0.02479 0.02786 0.86% Gravity::interpolate_monopole_grav() 21 0.02683 0.0272 0.02775 0.85% Castro::finalize_do_advance() 10 0.01102 0.01918 0.0243 0.75% Castro::post_init() 1 0.02304 0.0235 0.02368 0.73% Amr::writePlotFile() 2 0.02221 0.02231 0.02271 0.70% Castro::post_timestep() 10 0.01541 0.01587 0.01632 0.50% Castro::apply_source_to_state() 20 0.01087 0.01261 0.01363 0.42% FabArray::Saxpy() 20 0.01082 0.01256 0.01358 0.42% VisMF::Write(FabArray) 2 0.009214 0.009927 0.0134 0.41% Castro::check_for_nan() 20 0.01057 0.01139 0.0125 0.38% MultiFab::contains_nan() 20 0.01054 0.01137 0.01248 0.38% Castro::Castro() 1 0.009872 0.01127 0.0119 0.37% FabArray::setDomainBndry() 41 0.007581 0.009812 0.01141 0.35% Castro::construct_old_source() 50 0.007134 0.009625 0.01019 0.31% Castro::construct_old_gravity_source() 10 0.007081 0.009552 0.01012 0.31% Castro::computeNewDt() 9 0.008404 0.008427 0.008444 0.26% Castro::initMFs() 1 0.006653 0.007226 0.00758 0.23% Other 261 0.02509 0.02986 0.0324 1.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 34 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8654 KiB 8665 KiB 8669 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6748 KiB 6752 KiB 6754 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7139 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4542 KiB 4553 KiB 4565 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 212 KiB 230 KiB 244 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2797 KiB 2801 KiB 2802 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 236 KiB 243 KiB 253 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 43 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 81 KiB 81 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 72 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.01-3-g3a34576c9930) finalized