Initializing AMReX (25.01-3-g3a34576c9930)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.01-3-g3a34576c9930) initialized Starting run at 06:20:14 UTC on 2025-01-08. Successfully read inputs file ... Castro git describe: 25.01-1-geac7ad7c1 AMReX git describe: 25.01-3-g3a34576c9 Microphysics git describe: 25.01-9-gbb3b040b reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014506102 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.326579322 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.328240549 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.314293648 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.316643513 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.353955407 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.294777766 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.318158531 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.29974906 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.29986382 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.302827962 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.421940166 seconds Ending run at 06:20:18 UTC on 2025-01-08. Run time = 3.76664806 Run time without initialization = 3.582651067 Average number of zones advanced per microsecond: 0.732 Average number of zones advanced per microsecond per rank: 0.091 TinyProfiler total time across processes [min...avg...max]: 3.7653 ... 3.7659 ... 3.7667 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0582 2.1279 2.1874 58.07% Amr::writePlotFile() 2 0.4186 0.4228 0.4239 11.25% Gravity::make_radial_gravity() 21 0.2931 0.3044 0.3197 8.49% check_for_negative_density() 10 0.07112 0.1338 0.2046 5.43% Castro::initData() 1 0.03895 0.07832 0.1215 3.23% Castro::estTimeStep() 21 0.03536 0.07558 0.1208 3.21% amrex::Copy() 193 0.07252 0.08259 0.08964 2.38% FabArray::setVal() 143 0.06448 0.06978 0.07289 1.94% FabArray::ParallelCopy_finish() 41 0.04703 0.05459 0.0725 1.92% Castro::normalize_species() 62 0.04825 0.05356 0.06551 1.74% Castro::reset_internal_energy(Fab) 1008 0.04484 0.04679 0.04989 1.32% FabArray::ParallelCopy_nowait() 41 0.0381 0.04154 0.04303 1.14% StateData::FillBoundary(geom) 41 0.02979 0.03319 0.03628 0.96% FillPatchIterator::Initialize 41 0.02835 0.03339 0.03593 0.95% Gravity::interpolate_monopole_grav() 21 0.0272 0.02743 0.02768 0.73% Castro::construct_new_gravity_source() 10 0.02353 0.02513 0.02743 0.73% Castro::computeTemp() 63 0.01817 0.01916 0.02199 0.58% Castro::initialize_do_advance() 10 0.01236 0.01711 0.01839 0.49% VisMF::Write(FabArray) 2 0.008959 0.01001 0.01531 0.41% Castro::initialize_advance() 10 0.01158 0.01306 0.0152 0.40% MultiFab::contains_nan() 20 0.01032 0.01164 0.01353 0.36% FabArray::Saxpy() 20 0.0118 0.01274 0.01349 0.36% FabArray::setDomainBndry() 41 0.007826 0.01004 0.01147 0.30% Castro::construct_old_gravity_source() 10 0.007461 0.01014 0.01088 0.29% Castro::initMFs() 1 0.006243 0.007478 0.00986 0.26% Castro::construct_new_source() 50 0.006017 0.006319 0.007065 0.19% Amr::coarseTimeStep() 10 0.002589 0.004457 0.005799 0.15% main() 1 0.003693 0.004364 0.005139 0.14% Gravity::get_new_grav_vector() 11 0.002854 0.003277 0.003604 0.10% Gravity::get_old_grav_vector() 10 0.001576 0.0021 0.002449 0.07% Castro::finalize_do_advance() 10 0.0005123 0.001002 0.001111 0.03% AmrLevel::FillPatch() 41 0.0007885 0.0008379 0.0009136 0.02% Amr::timeStep() 10 0.0001752 0.0002385 0.000427 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002759 0.0002974 0.0003174 0.01% Castro::do_advance_ctu() 10 0.000152 0.0001703 0.0001865 0.00% Castro::clean_state() 62 0.0001471 0.0001613 0.000181 0.00% FillPatchIterator::FillFromLevel0() 41 9.409e-05 0.0001097 0.0001216 0.00% Castro::do_old_sources() 10 9.027e-05 0.0001001 0.0001215 0.00% StateDataPhysBCFunct::() 41 9.322e-05 0.0001072 0.0001205 0.00% FabArray::ParallelCopy() 41 9.381e-05 9.993e-05 0.0001122 0.00% Amr::FinalizeInit() 1 4.059e-06 1.697e-05 0.0001051 0.00% Castro::construct_old_source() 50 6.492e-05 7.883e-05 9.838e-05 0.00% Castro::Castro() 1 5.319e-05 6.663e-05 7.934e-05 0.00% FillPatchSingleLevel 41 6.177e-05 6.836e-05 7.7e-05 0.00% Castro::do_new_sources() 10 5.916e-05 6.574e-05 7.618e-05 0.00% Castro::advance() 10 4.337e-05 5.063e-05 6.06e-05 0.00% Castro::apply_source_to_state() 20 4.734e-05 5.119e-05 5.894e-05 0.00% Castro::subcycle_advance_ctu() 10 4.829e-05 5.395e-05 5.782e-05 0.00% Amr::defBaseLevel() 1 3.012e-05 3.862e-05 4.728e-05 0.00% Castro::construct_old_gravity() 10 3.676e-05 4.133e-05 4.556e-05 0.00% Castro::construct_new_gravity() 10 3.602e-05 3.824e-05 4.231e-05 0.00% Castro::expand_state() 10 2.276e-05 2.769e-05 3.52e-05 0.00% Castro::check_for_nan() 20 2.279e-05 2.529e-05 2.867e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.232e-06 1.118e-05 1.998e-05 0.00% Castro::post_timestep() 10 1.483e-05 1.63e-05 1.805e-05 0.00% Castro::post_init() 1 8.17e-06 9.225e-06 1.177e-05 0.00% Castro::computeNewDt() 9 8.563e-06 1.021e-05 1.158e-05 0.00% Amr::InitializeInit() 1 2.711e-06 3.643e-06 7.826e-06 0.00% Castro::computeInitialDt() 2 2.902e-06 3.719e-06 4.167e-06 0.00% Amr::init() 1 1.895e-06 2.633e-06 4.138e-06 0.00% Amr::initialInit() 1 1.247e-06 1.896e-06 2.439e-06 0.00% Other 260 0.0161 0.01951 0.02471 0.66% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.765 3.766 3.767 100.00% Amr::coarseTimeStep() 10 3.156 3.156 3.156 83.78% Amr::timeStep() 10 3.14 3.141 3.143 83.45% Castro::advance() 10 3.123 3.124 3.124 82.95% Castro::subcycle_advance_ctu() 10 3.039 3.044 3.048 80.92% Castro::do_advance_ctu() 10 3.039 3.044 3.048 80.92% Castro::construct_ctu_hydro_source() 10 2.28 2.285 2.288 60.74% Amr::writePlotFile() 2 0.4365 0.4366 0.4368 11.60% Gravity::make_radial_gravity() 21 0.3081 0.3206 0.3342 8.87% AmrLevel::FillPatch() 41 0.1934 0.2065 0.2169 5.76% Gravity::get_new_grav_vector() 11 0.2097 0.2121 0.2144 5.69% Castro::construct_old_gravity() 10 0.1858 0.1934 0.2057 5.46% Gravity::get_old_grav_vector() 10 0.1852 0.1927 0.205 5.44% check_for_negative_density() 10 0.07112 0.1338 0.2046 5.43% Castro::construct_new_gravity() 10 0.1873 0.1895 0.1912 5.08% Amr::init() 1 0.1833 0.1836 0.1837 4.88% FillPatchIterator::Initialize 41 0.1646 0.1732 0.182 4.83% Castro::initialize_do_advance() 10 0.1555 0.1663 0.1738 4.61% Amr::initialInit() 1 0.1686 0.169 0.1691 4.49% FillPatchIterator::FillFromLevel0() 41 0.1231 0.1298 0.1434 3.81% FillPatchSingleLevel 41 0.123 0.1297 0.1433 3.81% Amr::InitializeInit() 1 0.05847 0.1 0.1423 3.78% Amr::defBaseLevel() 1 0.05847 0.1 0.1423 3.78% Castro::clean_state() 62 0.117 0.1251 0.1362 3.62% Castro::initData() 1 0.04278 0.08224 0.125 3.32% Castro::estTimeStep() 21 0.03536 0.07558 0.1208 3.21% Castro::expand_state() 10 0.104 0.1119 0.1168 3.10% FabArray::ParallelCopy() 41 0.08985 0.09633 0.1108 2.94% Amr::FinalizeInit() 1 0.02668 0.06897 0.1106 2.94% Castro::do_old_sources() 10 0.1 0.104 0.1085 2.88% amrex::Copy() 193 0.07252 0.08259 0.08964 2.38% Castro::computeInitialDt() 2 0.00215 0.0444 0.08601 2.28% Castro::initialize_advance() 10 0.07265 0.07608 0.08113 2.15% FabArray::setVal() 143 0.06448 0.06978 0.07289 1.94% FabArray::ParallelCopy_finish() 41 0.04703 0.05459 0.0725 1.92% Castro::computeTemp() 63 0.06335 0.06625 0.07217 1.92% Castro::do_new_sources() 10 0.06324 0.06677 0.07183 1.91% Castro::normalize_species() 62 0.04825 0.05356 0.06551 1.74% Castro::reset_internal_energy(MultiFab) 63 0.04513 0.04709 0.05018 1.33% Castro::reset_internal_energy(Fab) 1008 0.04484 0.04679 0.04989 1.32% FabArray::ParallelCopy_nowait() 41 0.03822 0.04163 0.04312 1.14% StateDataPhysBCFunct::() 41 0.02988 0.0333 0.03639 0.97% StateData::FillBoundary(geom) 41 0.02979 0.03319 0.03628 0.96% Castro::construct_new_source() 50 0.02982 0.03145 0.0345 0.92% Castro::finalize_do_advance() 10 0.0176 0.02349 0.02778 0.74% Gravity::interpolate_monopole_grav() 21 0.0272 0.02743 0.02768 0.73% Castro::construct_new_gravity_source() 10 0.02353 0.02513 0.02743 0.73% Castro::post_init() 1 0.02336 0.02385 0.02414 0.64% Castro::post_timestep() 10 0.01602 0.01721 0.019 0.50% VisMF::Write(FabArray) 2 0.008959 0.01001 0.01531 0.41% Castro::Castro() 1 0.00937 0.01114 0.01386 0.37% Castro::check_for_nan() 20 0.01035 0.01167 0.01356 0.36% Castro::apply_source_to_state() 20 0.01185 0.01279 0.01354 0.36% MultiFab::contains_nan() 20 0.01032 0.01164 0.01353 0.36% FabArray::Saxpy() 20 0.0118 0.01274 0.01349 0.36% FabArray::setDomainBndry() 41 0.007826 0.01004 0.01147 0.30% Castro::construct_old_source() 50 0.007526 0.01022 0.01098 0.29% Castro::construct_old_gravity_source() 10 0.007461 0.01014 0.01088 0.29% Castro::initMFs() 1 0.006243 0.007478 0.00986 0.26% Castro::computeNewDt() 9 0.008687 0.008709 0.008727 0.23% AmrLevel::AmrLevel(dm) 1 0.005276 0.006239 0.007984 0.21% Other 260 0.02082 0.02507 0.03126 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 32 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 12 MiB 12 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8656 KiB 8671 KiB 8676 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6781 KiB 6787 KiB 6788 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4032 KiB 4038 KiB 4043 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 191 KiB 205 KiB 215 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2485 KiB 2487 KiB 2488 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 208 KiB 217 KiB 226 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 38 KiB 43 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 71 KiB 72 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 63 KiB 65 KiB 69 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.01-3-g3a34576c9930) finalized