Initializing AMReX (25.01-4-g56516ee47f78)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.01-4-g56516ee47f78) initialized Starting run at 06:19:35 UTC on 2025-01-09. Successfully read inputs file ... Castro git describe: 25.01-1-geac7ad7c1 AMReX git describe: 25.01-4-g56516ee47 Microphysics git describe: 25.01-9-gbb3b040b reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014525746 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.333627391 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.328305783 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.331982987 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.310916191 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.352933471 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.295271494 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.284790869 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.280482055 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.281982933 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.279839453 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007638101 seconds Ending run at 06:19:38 UTC on 2025-01-09. Run time = 3.272270088 Run time without initialization = 3.093287475 Average number of zones advanced per microsecond: 0.847 Average number of zones advanced per microsecond per rank: 0.106 TinyProfiler total time across processes [min...avg...max]: 3.2713 ... 3.2716 ... 3.2723 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 1.9972 2.1062 2.1667 66.21% Gravity::make_radial_gravity() 21 0.2896 0.2958 0.3122 9.54% check_for_negative_density() 10 0.05222 0.1143 0.2258 6.90% Castro::initData() 1 0.04036 0.07666 0.1134 3.47% Castro::estTimeStep() 21 0.02307 0.06493 0.1041 3.18% amrex::Copy() 193 0.07426 0.08328 0.0909 2.78% FabArray::setVal() 143 0.06798 0.07109 0.07477 2.29% FabArray::ParallelCopy_finish() 41 0.03661 0.04396 0.05907 1.81% Castro::normalize_species() 62 0.04497 0.04664 0.04899 1.50% Castro::reset_internal_energy(Fab) 1008 0.04478 0.04666 0.04873 1.49% FabArray::ParallelCopy_nowait() 41 0.03906 0.04275 0.04413 1.35% FillPatchIterator::Initialize 41 0.02894 0.03407 0.03624 1.11% StateData::FillBoundary(geom) 41 0.02867 0.03246 0.03495 1.07% Gravity::interpolate_monopole_grav() 21 0.02694 0.0273 0.02785 0.85% Castro::construct_new_gravity_source() 10 0.0232 0.02458 0.02621 0.80% Castro::computeTemp() 63 0.0183 0.01853 0.01888 0.58% Castro::initialize_do_advance() 10 0.01279 0.01713 0.01833 0.56% Castro::initialize_advance() 10 0.01009 0.01255 0.0152 0.46% FabArray::Saxpy() 20 0.01224 0.01336 0.01381 0.42% MultiFab::contains_nan() 20 0.01028 0.01127 0.01215 0.37% VisMF::Write(FabArray) 2 0.009292 0.009708 0.01209 0.37% FabArray::setDomainBndry() 41 0.007651 0.01068 0.01185 0.36% Castro::construct_old_gravity_source() 10 0.008534 0.01018 0.01086 0.33% Amr::writePlotFile() 2 0.0074 0.009801 0.0104 0.32% Castro::initMFs() 1 0.006267 0.00703 0.00744 0.23% Castro::construct_new_source() 50 0.006175 0.006241 0.006327 0.19% main() 1 0.003806 0.004157 0.004838 0.15% Gravity::get_new_grav_vector() 11 0.003052 0.003536 0.003882 0.12% Gravity::get_old_grav_vector() 10 0.001467 0.002178 0.002636 0.08% Amr::coarseTimeStep() 10 0.0009656 0.001776 0.002486 0.08% Castro::finalize_do_advance() 10 0.001231 0.001265 0.001355 0.04% AmrLevel::FillPatch() 41 0.0008108 0.000901 0.0009919 0.03% Amr::timeStep() 10 0.0001659 0.0002195 0.0003671 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002746 0.0002933 0.0003053 0.01% Castro::do_advance_ctu() 10 0.0001465 0.0001574 0.0001736 0.01% Castro::clean_state() 62 0.0001413 0.0001544 0.0001707 0.01% FillPatchIterator::FillFromLevel0() 41 9.48e-05 0.0001054 0.0001106 0.00% Amr::FinalizeInit() 1 3.536e-06 1.79e-05 0.0001086 0.00% StateDataPhysBCFunct::() 41 9.603e-05 0.0001025 0.0001075 0.00% Castro::do_old_sources() 10 7.228e-05 9.529e-05 0.0001069 0.00% FabArray::ParallelCopy() 41 8.568e-05 9.961e-05 0.000105 0.00% Castro::construct_old_source() 50 5.683e-05 8.289e-05 0.0001 0.00% Castro::do_new_sources() 10 5.678e-05 6.422e-05 9.18e-05 0.00% Castro::Castro() 1 5.826e-05 7.615e-05 9.157e-05 0.00% FillPatchSingleLevel 41 6.311e-05 6.733e-05 8.041e-05 0.00% Castro::apply_source_to_state() 20 4.24e-05 5.08e-05 5.902e-05 0.00% Castro::subcycle_advance_ctu() 10 4.056e-05 4.957e-05 5.717e-05 0.00% Castro::advance() 10 3.914e-05 4.677e-05 5.713e-05 0.00% Amr::defBaseLevel() 1 2.99e-05 4.128e-05 5.199e-05 0.00% Castro::construct_old_gravity() 10 3.553e-05 4.157e-05 5.007e-05 0.00% Castro::construct_new_gravity() 10 3.278e-05 3.766e-05 4.392e-05 0.00% Castro::expand_state() 10 2.043e-05 2.755e-05 3.267e-05 0.00% Castro::check_for_nan() 20 2.253e-05 2.454e-05 2.676e-05 0.00% Castro::post_timestep() 10 1.373e-05 1.552e-05 2.078e-05 0.00% Castro::post_init() 1 8.147e-06 1.107e-05 1.491e-05 0.00% Castro::computeNewDt() 9 8.894e-06 9.5e-06 9.926e-06 0.00% Amr::InitializeInit() 1 2.808e-06 4.134e-06 7.259e-06 0.00% Castro::computeInitialDt() 2 3.068e-06 3.598e-06 3.918e-06 0.00% Amr::init() 1 2.017e-06 2.459e-06 3.071e-06 0.00% Amr::initialInit() 1 1.42e-06 1.836e-06 2.168e-06 0.00% Other 261 0.01651 0.0187 0.01975 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.271 3.272 3.272 100.00% Amr::coarseTimeStep() 10 3.081 3.081 3.081 94.15% Amr::timeStep() 10 3.069 3.069 3.07 93.83% Castro::advance() 10 3.053 3.053 3.053 93.31% Castro::subcycle_advance_ctu() 10 2.972 2.976 2.979 91.03% Castro::do_advance_ctu() 10 2.972 2.976 2.979 91.03% Castro::construct_ctu_hydro_source() 10 2.239 2.242 2.245 68.59% Gravity::make_radial_gravity() 21 0.3073 0.3131 0.327 9.99% check_for_negative_density() 10 0.05222 0.1143 0.2258 6.90% Gravity::get_new_grav_vector() 11 0.2092 0.2106 0.2117 6.47% AmrLevel::FillPatch() 41 0.1912 0.1984 0.2052 6.27% Castro::construct_old_gravity() 10 0.1822 0.1856 0.1986 6.07% Gravity::get_old_grav_vector() 10 0.1815 0.1849 0.1979 6.05% Castro::construct_new_gravity() 10 0.1858 0.1864 0.1872 5.72% Amr::init() 1 0.1784 0.1786 0.1786 5.46% FillPatchIterator::Initialize 41 0.1576 0.1644 0.1686 5.15% Castro::initialize_do_advance() 10 0.1535 0.1638 0.1679 5.13% Amr::initialInit() 1 0.1636 0.1638 0.1639 5.01% Amr::InitializeInit() 1 0.06197 0.09804 0.1355 4.14% Amr::defBaseLevel() 1 0.06196 0.09803 0.1355 4.14% FillPatchIterator::FillFromLevel0() 41 0.1117 0.1197 0.1273 3.89% FillPatchSingleLevel 41 0.1116 0.1195 0.1272 3.89% Castro::clean_state() 62 0.1147 0.1174 0.1218 3.72% Castro::initData() 1 0.04405 0.08067 0.1176 3.59% Castro::expand_state() 10 0.1046 0.1097 0.1138 3.48% Castro::estTimeStep() 21 0.02307 0.06493 0.1041 3.18% Amr::FinalizeInit() 1 0.02838 0.06576 0.1016 3.11% Castro::do_old_sources() 10 0.09547 0.09795 0.1001 3.06% FabArray::ParallelCopy() 41 0.07927 0.08692 0.09833 3.00% amrex::Copy() 193 0.07426 0.08328 0.0909 2.78% Castro::initialize_advance() 10 0.07092 0.07397 0.07789 2.38% Castro::computeInitialDt() 2 0.002261 0.03975 0.07583 2.32% FabArray::setVal() 143 0.06798 0.07109 0.07477 2.29% Castro::do_new_sources() 10 0.06184 0.06592 0.07004 2.14% Castro::computeTemp() 63 0.06338 0.06548 0.06778 2.07% FabArray::ParallelCopy_finish() 41 0.03661 0.04396 0.05907 1.81% Castro::reset_internal_energy(MultiFab) 63 0.04507 0.04695 0.04904 1.50% Castro::normalize_species() 62 0.04497 0.04664 0.04899 1.50% Castro::reset_internal_energy(Fab) 1008 0.04478 0.04666 0.04873 1.49% FabArray::ParallelCopy_nowait() 41 0.03917 0.04285 0.04423 1.35% StateDataPhysBCFunct::() 41 0.02877 0.03256 0.03506 1.07% StateData::FillBoundary(geom) 41 0.02867 0.03246 0.03495 1.07% Castro::construct_new_source() 50 0.02939 0.03082 0.03249 0.99% Gravity::interpolate_monopole_grav() 21 0.02694 0.0273 0.02785 0.85% Castro::construct_new_gravity_source() 10 0.0232 0.02458 0.02621 0.80% Castro::post_init() 1 0.02498 0.02538 0.02565 0.78% Amr::writePlotFile() 2 0.02239 0.02251 0.02275 0.70% Castro::finalize_do_advance() 10 0.01357 0.01793 0.02212 0.68% Castro::post_timestep() 10 0.01556 0.01603 0.01664 0.51% Castro::apply_source_to_state() 20 0.01228 0.01341 0.01386 0.42% FabArray::Saxpy() 20 0.01224 0.01336 0.01381 0.42% Castro::check_for_nan() 20 0.0103 0.0113 0.01217 0.37% MultiFab::contains_nan() 20 0.01028 0.01127 0.01215 0.37% VisMF::Write(FabArray) 2 0.009292 0.009708 0.01209 0.37% Castro::Castro() 1 0.009336 0.01111 0.01189 0.36% FabArray::setDomainBndry() 41 0.007651 0.01068 0.01185 0.36% Castro::construct_old_source() 50 0.008591 0.01026 0.01095 0.33% Castro::construct_old_gravity_source() 10 0.008534 0.01018 0.01086 0.33% Castro::computeNewDt() 9 0.008518 0.008533 0.008544 0.26% Castro::initMFs() 1 0.006267 0.00703 0.00744 0.23% Other 261 0.02694 0.02996 0.03182 0.97% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 38 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8656 KiB 8667 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6737 KiB 6743 KiB 6744 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4537 KiB 4543 KiB 4545 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 219 KiB 228 KiB 236 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2795 KiB 2798 KiB 2799 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 239 KiB 243 KiB 254 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 40 KiB 45 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 82 KiB 82 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 72 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.01-4-g56516ee47f78) finalized