Initializing AMReX (25.01-6-g041f225dc5c9)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.01-6-g041f225dc5c9) initialized Starting run at 06:19:37 UTC on 2025-01-10. Successfully read inputs file ... Castro git describe: 25.01-1-geac7ad7c1 AMReX git describe: 25.01-6-g041f225dc Microphysics git describe: 25.01-9-gbb3b040b reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.553061084 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.384433926 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.366270493 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.378230396 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.363454463 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.364205613 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.362241601 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.363532273 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.36157013 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.362574791 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.361788778 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.01270099 seconds Ending run at 06:19:41 UTC on 2025-01-10. Run time = 4.411179367 Run time without initialization = 3.689066042 Average number of zones advanced per microsecond: 0.711 Average number of zones advanced per microsecond per rank: 0.089 TinyProfiler total time across processes [min...avg...max]: 4.4107 ... 4.4110 ... 4.4112 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1484 2.3748 2.5713 58.29% Amr::writePlotFile() 2 0.5454 0.5492 0.5523 12.52% check_for_negative_density() 10 0.02122 0.2247 0.4525 10.26% Gravity::make_radial_gravity() 21 0.2985 0.3151 0.335 7.60% amrex::Copy() 193 0.1012 0.1168 0.1311 2.97% FabArray::setVal() 143 0.09564 0.1028 0.107 2.42% Castro::initData() 1 0.03762 0.07199 0.1061 2.41% Castro::estTimeStep() 21 0.02264 0.06337 0.1017 2.31% FabArray::ParallelCopy_finish() 41 0.05589 0.06103 0.06902 1.56% FabArray::ParallelCopy_nowait() 41 0.06003 0.06467 0.06883 1.56% Castro::normalize_species() 62 0.05004 0.05598 0.0674 1.53% FillPatchIterator::Initialize 41 0.04352 0.0532 0.06158 1.40% Castro::reset_internal_energy(Fab) 1008 0.04994 0.05176 0.0541 1.23% StateData::FillBoundary(geom) 41 0.03518 0.04035 0.04603 1.04% Castro::construct_new_gravity_source() 10 0.02874 0.032 0.03537 0.80% Castro::initialize_do_advance() 10 0.02288 0.02591 0.02986 0.68% Gravity::interpolate_monopole_grav() 21 0.02719 0.0276 0.02794 0.63% Castro::computeTemp() 63 0.01919 0.02067 0.0228 0.52% FabArray::Saxpy() 20 0.01695 0.0187 0.02049 0.46% FabArray::setDomainBndry() 41 0.01514 0.01739 0.01961 0.44% VisMF::Write(FabArray) 2 0.009879 0.01243 0.01629 0.37% MultiFab::contains_nan() 20 0.0123 0.01463 0.0162 0.37% Castro::initialize_advance() 10 0.01532 0.01576 0.01614 0.37% Castro::construct_old_gravity_source() 10 0.01427 0.01528 0.01588 0.36% Castro::initMFs() 1 0.008858 0.009127 0.009695 0.22% Castro::construct_new_source() 50 0.007385 0.008229 0.008943 0.20% main() 1 0.006997 0.007386 0.007569 0.17% Gravity::get_new_grav_vector() 11 0.003925 0.005227 0.005979 0.14% Amr::coarseTimeStep() 10 0.002073 0.004289 0.005275 0.12% Gravity::get_old_grav_vector() 10 0.002646 0.003141 0.003758 0.09% Castro::finalize_do_advance() 10 0.001317 0.001345 0.001364 0.03% AmrLevel::FillPatch() 41 0.0009886 0.001038 0.001113 0.03% Amr::timeStep() 10 0.0001581 0.0002677 0.0005947 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003234 0.0003554 0.0003923 0.01% Castro::do_advance_ctu() 10 0.0001836 0.0002095 0.0002532 0.01% Castro::clean_state() 62 0.0001901 0.0002078 0.0002209 0.01% Castro::Castro() 1 0.0001166 0.0001573 0.0001969 0.00% FillPatchIterator::FillFromLevel0() 41 0.000146 0.0001568 0.0001652 0.00% StateDataPhysBCFunct::() 41 0.0001206 0.0001464 0.0001626 0.00% FabArray::ParallelCopy() 41 0.0001375 0.0001498 0.000162 0.00% Castro::do_old_sources() 10 0.0001059 0.0001246 0.0001416 0.00% Castro::construct_old_source() 50 8.887e-05 0.0001035 0.0001206 0.00% FillPatchSingleLevel 41 8.513e-05 9.654e-05 0.0001041 0.00% Castro::apply_source_to_state() 20 5.552e-05 7.337e-05 9.748e-05 0.00% Amr::FinalizeInit() 1 4.986e-06 1.8e-05 9.425e-05 0.00% Castro::advance() 10 4.811e-05 6.291e-05 9.404e-05 0.00% Castro::subcycle_advance_ctu() 10 5.39e-05 7.36e-05 9.068e-05 0.00% Castro::do_new_sources() 10 6.864e-05 7.839e-05 8.637e-05 0.00% Castro::expand_state() 10 3.868e-05 4.847e-05 5.697e-05 0.00% Amr::defBaseLevel() 1 3.776e-05 4.841e-05 5.665e-05 0.00% Castro::construct_old_gravity() 10 3.937e-05 4.575e-05 5.277e-05 0.00% Castro::construct_new_gravity() 10 3.072e-05 4.16e-05 5.116e-05 0.00% Castro::check_for_nan() 20 2.64e-05 3.338e-05 4.003e-05 0.00% Castro::post_timestep() 10 1.571e-05 2.273e-05 3.303e-05 0.00% Castro::post_init() 1 8.622e-06 1.106e-05 1.577e-05 0.00% Amr::init() 1 2.245e-06 4.221e-06 1.197e-05 0.00% Castro::computeNewDt() 9 1.024e-05 1.053e-05 1.095e-05 0.00% Amr::InitializeInit() 1 2.865e-06 3.97e-06 5.522e-06 0.00% Castro::computeInitialDt() 2 3.989e-06 4.429e-06 5.201e-06 0.00% Amr::initialInit() 1 1.521e-06 2.103e-06 3.453e-06 0.00% Other 261 0.02016 0.02256 0.02479 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.411 4.411 4.411 100.00% Amr::coarseTimeStep() 10 3.669 3.669 3.669 83.17% Amr::timeStep() 10 3.654 3.655 3.657 82.90% Castro::advance() 10 3.636 3.637 3.637 82.45% Castro::subcycle_advance_ctu() 10 3.527 3.53 3.536 80.16% Castro::do_advance_ctu() 10 3.527 3.53 3.536 80.16% Castro::construct_ctu_hydro_source() 10 2.617 2.624 2.634 59.72% Amr::init() 1 0.7216 0.7217 0.7218 16.36% Amr::writePlotFile() 2 0.566 0.566 0.5662 12.84% check_for_negative_density() 10 0.02122 0.2247 0.4525 10.26% Gravity::make_radial_gravity() 21 0.3233 0.3391 0.3597 8.15% AmrLevel::FillPatch() 41 0.2613 0.2868 0.3109 7.05% FillPatchIterator::Initialize 41 0.2215 0.2373 0.2536 5.75% Castro::initialize_do_advance() 10 0.2107 0.2314 0.247 5.60% Gravity::get_new_grav_vector() 11 0.2307 0.2352 0.2384 5.40% Castro::construct_old_gravity() 10 0.1958 0.2083 0.2231 5.06% Gravity::get_old_grav_vector() 10 0.1949 0.2074 0.2224 5.04% Castro::construct_new_gravity() 10 0.2029 0.2069 0.2101 4.76% Castro::expand_state() 10 0.1382 0.1605 0.1783 4.04% FillPatchIterator::FillFromLevel0() 41 0.1619 0.1667 0.1737 3.94% FillPatchSingleLevel 41 0.1618 0.1666 0.1736 3.93% Amr::initialInit() 1 0.1683 0.1685 0.1686 3.82% Castro::clean_state() 62 0.1289 0.1356 0.1474 3.34% Castro::do_old_sources() 10 0.1346 0.1392 0.1415 3.21% Amr::InitializeInit() 1 0.06664 0.1017 0.136 3.08% Amr::defBaseLevel() 1 0.06664 0.1017 0.136 3.08% amrex::Copy() 193 0.1012 0.1168 0.1311 2.97% FabArray::ParallelCopy() 41 0.1212 0.126 0.1306 2.96% Castro::initData() 1 0.04279 0.07726 0.111 2.52% FabArray::setVal() 143 0.09564 0.1028 0.107 2.42% Castro::initialize_advance() 10 0.09568 0.1015 0.105 2.38% Castro::estTimeStep() 21 0.02264 0.06337 0.1017 2.31% Amr::FinalizeInit() 1 0.03255 0.06677 0.1016 2.30% Castro::do_new_sources() 10 0.07494 0.08003 0.08458 1.92% Castro::computeTemp() 63 0.06947 0.07278 0.0773 1.75% Castro::computeInitialDt() 2 0.002244 0.03652 0.07157 1.62% FabArray::ParallelCopy_finish() 41 0.05589 0.06103 0.06902 1.56% FabArray::ParallelCopy_nowait() 41 0.06016 0.0648 0.06897 1.56% Castro::normalize_species() 62 0.05004 0.05598 0.0674 1.53% Castro::reset_internal_energy(MultiFab) 63 0.05028 0.05211 0.05449 1.24% Castro::reset_internal_energy(Fab) 1008 0.04994 0.05176 0.0541 1.23% StateDataPhysBCFunct::() 41 0.03531 0.0405 0.04619 1.05% StateData::FillBoundary(geom) 41 0.03518 0.04035 0.04603 1.04% Castro::construct_new_source() 50 0.03612 0.04023 0.04413 1.00% Castro::construct_new_gravity_source() 10 0.02874 0.032 0.03537 0.80% Castro::post_init() 1 0.02907 0.02945 0.02978 0.68% Gravity::interpolate_monopole_grav() 21 0.02719 0.0276 0.02794 0.63% Castro::finalize_do_advance() 10 0.01314 0.01961 0.02677 0.61% Castro::apply_source_to_state() 20 0.017 0.01878 0.02056 0.47% Castro::post_timestep() 10 0.01658 0.01781 0.02049 0.46% FabArray::Saxpy() 20 0.01695 0.0187 0.02049 0.46% FabArray::setDomainBndry() 41 0.01514 0.01739 0.01961 0.44% Castro::Castro() 1 0.0162 0.01692 0.01769 0.40% VisMF::Write(FabArray) 2 0.009879 0.01243 0.01629 0.37% Castro::check_for_nan() 20 0.01232 0.01467 0.01624 0.37% MultiFab::contains_nan() 20 0.0123 0.01463 0.0162 0.37% Castro::construct_old_source() 50 0.01439 0.01538 0.01597 0.36% Castro::construct_old_gravity_source() 10 0.01427 0.01528 0.01588 0.36% Castro::initMFs() 1 0.008858 0.009127 0.009695 0.22% Castro::computeNewDt() 9 0.008595 0.008607 0.00862 0.20% Other 261 0.03338 0.0368 0.0404 0.92% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 25 B 26 B 30 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 10 MiB 11 MiB 12 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8663 KiB 8669 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 5960 KiB 5964 KiB 5965 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7135 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 3995 KiB 3998 KiB 4001 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 220 KiB 247 KiB 270 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2471 KiB 2473 KiB 2473 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 186 KiB 195 KiB 207 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 42 KiB 43 KiB 45 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 67 KiB 68 KiB 69 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 56 KiB 60 KiB 64 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.01-6-g041f225dc5c9) finalized