Initializing AMReX (25.01-9-ge761abff95af)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.01-9-ge761abff95af) initialized Starting run at 06:26:25 UTC on 2025-01-13. Successfully read inputs file ... Castro git describe: 25.01-2-g1d40334d3 AMReX git describe: 25.01-9-ge761abff9 Microphysics git describe: 25.01-19-gf2094f96 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014355604 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.331963574 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.325548478 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.30511517 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.305019065 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.335223455 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.311164609 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.29161878 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.292281387 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.291184108 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.291336341 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008755749 seconds Ending run at 06:26:28 UTC on 2025-01-13. Run time = 3.334567757 Run time without initialization = 3.094833736 Average number of zones advanced per microsecond: 0.847 Average number of zones advanced per microsecond per rank: 0.106 TinyProfiler total time across processes [min...avg...max]: 3.3329 ... 3.3343 ... 3.3346 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 1.9580 2.0845 2.1418 64.23% Gravity::make_radial_gravity() 21 0.2883 0.3031 0.3326 9.97% check_for_negative_density() 10 0.0521 0.1156 0.251 7.53% Castro::initData() 1 0.03725 0.0742 0.1223 3.67% FabArray::ParallelCopy_finish() 41 0.04537 0.06943 0.1217 3.65% Castro::estTimeStep() 21 0.03032 0.07941 0.1157 3.47% amrex::Copy() 193 0.05352 0.07998 0.08982 2.69% FabArray::setVal() 143 0.049 0.06451 0.07293 2.19% Amr::InitAmr() 1 0.0002034 0.007138 0.05558 1.67% DistributionMapping::LeastUsedCPUs() 1 3.306e-05 0.04849 0.05543 1.66% Castro::normalize_species() 62 0.0453 0.04683 0.04839 1.45% Castro::reset_internal_energy(Fab) 1008 0.04469 0.04601 0.04743 1.42% FabArray::ParallelCopy_nowait() 41 0.0305 0.04117 0.04493 1.35% FillPatchIterator::Initialize 41 0.02451 0.03394 0.04135 1.24% StateData::FillBoundary(geom) 41 0.02809 0.03248 0.036 1.08% Gravity::interpolate_monopole_grav() 21 0.02657 0.02755 0.02918 0.88% Castro::construct_new_gravity_source() 10 0.02213 0.02426 0.02652 0.80% Castro::computeTemp() 63 0.01812 0.01864 0.01884 0.56% Castro::initialize_do_advance() 10 0.01037 0.01648 0.01843 0.55% VisMF::Write(FabArray) 2 0.009074 0.009916 0.01435 0.43% FabArray::Saxpy() 20 0.009318 0.01201 0.01408 0.42% FabArray::setDomainBndry() 41 0.007704 0.01142 0.01376 0.41% MultiFab::contains_nan() 20 0.01076 0.01135 0.01279 0.38% Castro::initialize_advance() 10 0.004797 0.01013 0.01201 0.36% Amr::writePlotFile() 2 0.00733 0.0103 0.01108 0.33% Castro::construct_old_gravity_source() 10 0.005871 0.008871 0.01006 0.30% Castro::initMFs() 1 0.006431 0.006966 0.007895 0.24% Castro::construct_new_source() 50 0.005111 0.006203 0.006733 0.20% main() 1 0.003105 0.004549 0.004885 0.15% Gravity::get_new_grav_vector() 11 0.002496 0.003521 0.004098 0.12% Amr::coarseTimeStep() 10 0.001547 0.001901 0.00297 0.09% Gravity::get_old_grav_vector() 10 0.001356 0.001987 0.002393 0.07% Castro::finalize_do_advance() 10 0.0003855 0.001029 0.00113 0.03% AmrLevel::FillPatch() 41 0.0006388 0.0009385 0.001044 0.03% Amr::timeStep() 10 0.0001836 0.0002265 0.0004048 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002838 0.0002977 0.000315 0.01% Castro::do_advance_ctu() 10 0.0001382 0.0001659 0.0002011 0.01% Castro::clean_state() 62 0.0001411 0.0001505 0.0001592 0.00% StateDataPhysBCFunct::() 41 8.48e-05 0.0001133 0.0001447 0.00% FabArray::ParallelCopy() 41 7.907e-05 9.746e-05 0.0001128 0.00% FillPatchIterator::FillFromLevel0() 41 9.217e-05 0.0001033 0.00011 0.00% Castro::do_old_sources() 10 6.268e-05 9.417e-05 0.000108 0.00% Castro::construct_old_source() 50 4.283e-05 7.055e-05 8.35e-05 0.00% Castro::Castro() 1 5.144e-05 6.804e-05 8.322e-05 0.00% FillPatchSingleLevel 41 5.599e-05 6.713e-05 7.302e-05 0.00% Castro::do_new_sources() 10 5.041e-05 6.192e-05 7.152e-05 0.00% Amr::FinalizeInit() 1 3.801e-06 1.208e-05 6.643e-05 0.00% Castro::subcycle_advance_ctu() 10 3.692e-05 5.002e-05 6.223e-05 0.00% Castro::apply_source_to_state() 20 3.743e-05 4.571e-05 5.744e-05 0.00% Castro::construct_old_gravity() 10 3.16e-05 3.935e-05 4.961e-05 0.00% Castro::advance() 10 3.481e-05 4.351e-05 4.727e-05 0.00% Amr::defBaseLevel() 1 2.858e-05 3.425e-05 4.481e-05 0.00% Castro::construct_new_gravity() 10 2.729e-05 3.519e-05 4.382e-05 0.00% Castro::check_for_nan() 20 2.523e-05 2.752e-05 3.167e-05 0.00% Castro::expand_state() 10 1.807e-05 2.452e-05 3.009e-05 0.00% Castro::post_timestep() 10 1.494e-05 1.638e-05 1.855e-05 0.00% Castro::post_init() 1 8.233e-06 1.026e-05 1.462e-05 0.00% Castro::computeNewDt() 9 8.605e-06 9.888e-06 1.081e-05 0.00% Amr::InitializeInit() 1 2.698e-06 4.132e-06 7.761e-06 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 3.921e-06 4.708e-06 5.894e-06 0.00% Castro::computeInitialDt() 2 3.141e-06 3.712e-06 4.844e-06 0.00% Amr::init() 1 2.053e-06 2.365e-06 2.72e-06 0.00% Amr::initialInit() 1 1.443e-06 1.974e-06 2.469e-06 0.00% Other 258 0.01446 0.01755 0.01886 0.57% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.333 3.334 3.335 100.00% Amr::coarseTimeStep() 10 3.081 3.081 3.081 92.40% Amr::timeStep() 10 3.069 3.07 3.07 92.07% Castro::advance() 10 3.052 3.053 3.054 91.58% Castro::subcycle_advance_ctu() 10 2.977 2.983 3.002 90.02% Castro::do_advance_ctu() 10 2.977 2.983 3.002 90.02% Castro::construct_ctu_hydro_source() 10 2.216 2.222 2.23 66.87% Gravity::make_radial_gravity() 21 0.3054 0.319 0.3431 10.29% check_for_negative_density() 10 0.0521 0.1156 0.251 7.53% Amr::init() 1 0.184 0.2324 0.2394 7.18% AmrLevel::FillPatch() 41 0.2066 0.2216 0.2327 6.98% Amr::initialInit() 1 0.1695 0.2183 0.2253 6.76% Castro::construct_old_gravity() 10 0.1875 0.1978 0.2174 6.52% Gravity::get_old_grav_vector() 10 0.1868 0.1972 0.2169 6.50% FillPatchIterator::Initialize 41 0.1762 0.1889 0.213 6.39% Gravity::get_new_grav_vector() 11 0.2086 0.2098 0.2114 6.34% Amr::InitializeInit() 1 0.06846 0.143 0.1991 5.97% Amr::defBaseLevel() 1 0.06845 0.143 0.1991 5.97% Castro::construct_new_gravity() 10 0.1867 0.1875 0.1891 5.67% FillPatchIterator::FillFromLevel0() 41 0.1225 0.1435 0.1807 5.42% FillPatchSingleLevel 41 0.1224 0.1434 0.1806 5.42% Castro::initialize_do_advance() 10 0.1633 0.168 0.1741 5.22% FabArray::ParallelCopy() 41 0.09047 0.1108 0.1524 4.57% Castro::initData() 1 0.04114 0.07805 0.1259 3.77% FabArray::ParallelCopy_finish() 41 0.04537 0.06943 0.1217 3.65% Castro::expand_state() 10 0.1083 0.1146 0.1207 3.62% Castro::clean_state() 62 0.113 0.117 0.1181 3.54% Castro::estTimeStep() 21 0.03032 0.07941 0.1157 3.47% Amr::FinalizeInit() 1 0.02621 0.07527 0.1132 3.39% Castro::do_old_sources() 10 0.09789 0.1076 0.1116 3.35% amrex::Copy() 193 0.05352 0.07998 0.08982 2.69% Castro::computeInitialDt() 2 0.002134 0.05124 0.08908 2.67% Castro::initialize_advance() 10 0.04768 0.06707 0.07326 2.20% FabArray::setVal() 143 0.049 0.06451 0.07293 2.19% Castro::computeTemp() 63 0.06312 0.06495 0.06647 1.99% Castro::do_new_sources() 10 0.05702 0.06316 0.06608 1.98% Amr::InitAmr() 1 0.0002061 0.007142 0.05559 1.67% DistributionMapping::SFCProcessorMapDoIt() 1 4.47e-05 0.0485 0.05544 1.66% DistributionMapping::LeastUsedCPUs() 1 3.306e-05 0.04849 0.05543 1.66% Castro::normalize_species() 62 0.0453 0.04683 0.04839 1.45% Castro::reset_internal_energy(MultiFab) 63 0.045 0.04631 0.04772 1.43% Castro::reset_internal_energy(Fab) 1008 0.04469 0.04601 0.04743 1.42% FabArray::ParallelCopy_nowait() 41 0.03059 0.04125 0.04502 1.35% StateDataPhysBCFunct::() 41 0.02817 0.03259 0.03614 1.08% StateData::FillBoundary(geom) 41 0.02809 0.03248 0.036 1.08% Castro::construct_new_source() 50 0.02724 0.03046 0.03288 0.99% Gravity::interpolate_monopole_grav() 21 0.02657 0.02755 0.02918 0.88% Castro::finalize_do_advance() 10 0.01618 0.02074 0.02751 0.82% Castro::construct_new_gravity_source() 10 0.02213 0.02426 0.02652 0.80% Castro::post_init() 1 0.02305 0.02348 0.02362 0.71% Amr::writePlotFile() 2 0.02288 0.02299 0.02337 0.70% Castro::post_timestep() 10 0.0158 0.01612 0.0165 0.49% VisMF::Write(FabArray) 2 0.009074 0.009916 0.01435 0.43% Castro::apply_source_to_state() 20 0.009355 0.01206 0.01414 0.42% FabArray::Saxpy() 20 0.009318 0.01201 0.01408 0.42% FabArray::setDomainBndry() 41 0.007704 0.01142 0.01376 0.41% Castro::check_for_nan() 20 0.01079 0.01138 0.01282 0.38% MultiFab::contains_nan() 20 0.01076 0.01135 0.01279 0.38% Castro::Castro() 1 0.01011 0.0107 0.01158 0.35% Castro::construct_old_source() 50 0.005914 0.008942 0.01014 0.30% Castro::construct_old_gravity_source() 10 0.005871 0.008871 0.01006 0.30% Castro::computeNewDt() 9 0.008463 0.008475 0.008491 0.25% Castro::initMFs() 1 0.006431 0.006966 0.007895 0.24% Other 258 0.02438 0.02827 0.03049 0.91% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 34 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8514 KiB 8525 KiB 8529 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6617 KiB 6622 KiB 6623 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7013 KiB 7022 KiB 7024 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4460 KiB 4469 KiB 4493 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 230 KiB 244 KiB 258 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2742 KiB 2746 KiB 2747 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 233 KiB 244 KiB 262 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 48 KiB 68 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 1993 KiB 1995 KiB 1996 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 80 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 75 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.01-9-ge761abff95af) finalized