Initializing AMReX (25.01-9-ge761abff95af)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.01-9-ge761abff95af) initialized Starting run at 06:19:41 UTC on 2025-01-14. Successfully read inputs file ... Castro git describe: 25.01-2-g1d40334d3 AMReX git describe: 25.01-9-ge761abff9 Microphysics git describe: 25.01-21-g369afb68 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014192515 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.333542616 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.33109821 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.304980141 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.301871652 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.348898468 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.297527336 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.2834101 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.28413684 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.284678406 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.283645375 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007757572 seconds Ending run at 06:19:44 UTC on 2025-01-14. Run time = 3.228712586 Run time without initialization = 3.066298858 Average number of zones advanced per microsecond: 0.855 Average number of zones advanced per microsecond per rank: 0.107 TinyProfiler total time across processes [min...avg...max]: 3.2286 ... 3.2286 ... 3.2287 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 1.9755 2.0963 2.1749 67.36% Gravity::make_radial_gravity() 21 0.2844 0.2955 0.3113 9.64% check_for_negative_density() 10 0.02136 0.1065 0.2295 7.11% Castro::initData() 1 0.03704 0.07204 0.1016 3.15% Castro::estTimeStep() 21 0.02157 0.05748 0.09684 3.00% amrex::Copy() 193 0.06379 0.07769 0.0868 2.69% FabArray::ParallelCopy_finish() 41 0.03833 0.05084 0.0861 2.67% FabArray::setVal() 143 0.05991 0.06745 0.07578 2.35% Castro::reset_internal_energy(Fab) 1008 0.04492 0.04652 0.04883 1.51% Castro::normalize_species() 62 0.04561 0.04684 0.0483 1.50% FabArray::ParallelCopy_nowait() 41 0.03474 0.04053 0.04286 1.33% StateData::FillBoundary(geom) 41 0.02886 0.03211 0.03639 1.13% FillPatchIterator::Initialize 41 0.0268 0.03177 0.03416 1.06% Gravity::interpolate_monopole_grav() 21 0.02708 0.02754 0.02785 0.86% Castro::construct_new_gravity_source() 10 0.02277 0.02451 0.02778 0.86% Castro::computeTemp() 63 0.01816 0.01859 0.01925 0.60% Castro::initialize_do_advance() 10 0.01187 0.01638 0.01834 0.57% FabArray::Saxpy() 20 0.01073 0.01242 0.01353 0.42% Castro::initialize_advance() 10 0.005501 0.0106 0.01351 0.42% VisMF::Write(FabArray) 2 0.009245 0.009787 0.01305 0.40% MultiFab::contains_nan() 20 0.01033 0.01125 0.01277 0.40% FabArray::setDomainBndry() 41 0.009281 0.01074 0.0122 0.38% Castro::construct_old_gravity_source() 10 0.00693 0.00946 0.01002 0.31% Amr::writePlotFile() 2 0.007335 0.00941 0.00984 0.30% Castro::initMFs() 1 0.006379 0.007046 0.007814 0.24% Castro::construct_new_source() 50 0.005596 0.00601 0.006395 0.20% main() 1 0.004083 0.004156 0.004287 0.13% Gravity::get_new_grav_vector() 11 0.002647 0.003489 0.003865 0.12% Gravity::get_old_grav_vector() 10 0.001632 0.001997 0.002512 0.08% Amr::coarseTimeStep() 10 0.0006584 0.001781 0.002274 0.07% Castro::finalize_do_advance() 10 0.0004199 0.00105 0.001161 0.04% AmrLevel::FillPatch() 41 0.0006472 0.0008641 0.0009902 0.03% Amr::timeStep() 10 0.0001714 0.00022 0.0003579 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002906 0.0003011 0.0003273 0.01% Castro::do_advance_ctu() 10 0.0001448 0.0001656 0.0001884 0.01% Castro::clean_state() 62 0.0001415 0.0001514 0.0001665 0.01% FillPatchIterator::FillFromLevel0() 41 9.113e-05 0.0001049 0.0001216 0.00% Castro::do_old_sources() 10 6.828e-05 9.625e-05 0.0001185 0.00% StateDataPhysBCFunct::() 41 9.044e-05 9.844e-05 0.0001074 0.00% FabArray::ParallelCopy() 41 7.918e-05 9.63e-05 0.0001039 0.00% Amr::FinalizeInit() 1 3.887e-06 1.504e-05 8.726e-05 0.00% Castro::construct_old_source() 50 4.744e-05 7.029e-05 8.2e-05 0.00% Castro::Castro() 1 5.299e-05 7.008e-05 8.113e-05 0.00% FillPatchSingleLevel 41 5.825e-05 6.617e-05 8.066e-05 0.00% Castro::do_new_sources() 10 5.356e-05 6.449e-05 7.482e-05 0.00% Castro::subcycle_advance_ctu() 10 4.06e-05 5.284e-05 6.346e-05 0.00% Castro::apply_source_to_state() 20 4.313e-05 4.892e-05 5.712e-05 0.00% Castro::advance() 10 3.477e-05 4.699e-05 5.599e-05 0.00% Amr::defBaseLevel() 1 2.549e-05 4.064e-05 5.028e-05 0.00% Castro::construct_old_gravity() 10 3.087e-05 3.842e-05 4.254e-05 0.00% Castro::construct_new_gravity() 10 3.044e-05 3.603e-05 4.232e-05 0.00% Castro::check_for_nan() 20 2.579e-05 2.904e-05 3.853e-05 0.00% Castro::expand_state() 10 2.329e-05 2.677e-05 3.16e-05 0.00% Castro::post_init() 1 9.59e-06 1.514e-05 2.237e-05 0.00% Castro::post_timestep() 10 1.294e-05 1.614e-05 1.828e-05 0.00% Castro::computeNewDt() 9 8.876e-06 9.665e-06 1.081e-05 0.00% Amr::InitializeInit() 1 2.745e-06 4.463e-06 6.4e-06 0.00% Castro::computeInitialDt() 2 3.205e-06 3.789e-06 4.441e-06 0.00% Amr::init() 1 1.925e-06 2.162e-06 2.593e-06 0.00% Amr::initialInit() 1 1.322e-06 1.728e-06 2.159e-06 0.00% Other 261 0.01468 0.01797 0.01956 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.229 3.229 3.229 100.00% Amr::coarseTimeStep() 10 3.054 3.054 3.054 94.60% Amr::timeStep() 10 3.043 3.043 3.044 94.28% Castro::advance() 10 3.026 3.027 3.028 93.77% Castro::subcycle_advance_ctu() 10 2.946 2.954 2.965 91.82% Castro::do_advance_ctu() 10 2.946 2.954 2.965 91.82% Castro::construct_ctu_hydro_source() 10 2.219 2.225 2.229 69.02% Gravity::make_radial_gravity() 21 0.3008 0.3117 0.3242 10.04% check_for_negative_density() 10 0.02136 0.1065 0.2295 7.11% AmrLevel::FillPatch() 41 0.179 0.198 0.211 6.54% Gravity::get_new_grav_vector() 11 0.2044 0.2071 0.2088 6.47% Castro::construct_old_gravity() 10 0.1788 0.1857 0.1963 6.08% Gravity::get_old_grav_vector() 10 0.1781 0.185 0.1957 6.06% FillPatchIterator::Initialize 41 0.1483 0.1664 0.1862 5.77% Castro::construct_new_gravity() 10 0.1828 0.1849 0.1861 5.76% Castro::initialize_do_advance() 10 0.1566 0.1659 0.1715 5.31% Amr::init() 1 0.1618 0.162 0.1621 5.02% FillPatchIterator::FillFromLevel0() 41 0.1086 0.1239 0.1501 4.65% FillPatchSingleLevel 41 0.1085 0.1238 0.15 4.65% Amr::initialInit() 1 0.1475 0.148 0.1482 4.59% Castro::clean_state() 62 0.1149 0.1175 0.1222 3.78% Amr::InitializeInit() 1 0.05844 0.09252 0.1219 3.78% Amr::defBaseLevel() 1 0.05844 0.09251 0.1219 3.78% FabArray::ParallelCopy() 41 0.0784 0.09155 0.121 3.75% Castro::expand_state() 10 0.1016 0.1126 0.1195 3.70% Castro::initData() 1 0.04048 0.07583 0.1054 3.26% Castro::do_old_sources() 10 0.08972 0.09362 0.0975 3.02% Castro::estTimeStep() 21 0.02157 0.05748 0.09684 3.00% Amr::FinalizeInit() 1 0.02626 0.05553 0.08963 2.78% amrex::Copy() 193 0.06379 0.07769 0.0868 2.69% FabArray::ParallelCopy_finish() 41 0.03833 0.05084 0.0861 2.67% Castro::initialize_advance() 10 0.05794 0.06978 0.07732 2.39% FabArray::setVal() 143 0.05991 0.06745 0.07578 2.35% Castro::do_new_sources() 10 0.06004 0.0646 0.0723 2.24% Castro::computeTemp() 63 0.06338 0.06541 0.06839 2.12% Castro::computeInitialDt() 2 0.002102 0.0315 0.06558 2.03% Castro::reset_internal_energy(MultiFab) 63 0.04522 0.04682 0.04914 1.52% Castro::reset_internal_energy(Fab) 1008 0.04492 0.04652 0.04883 1.51% Castro::normalize_species() 62 0.04561 0.04684 0.0483 1.50% FabArray::ParallelCopy_nowait() 41 0.03484 0.04062 0.04295 1.33% StateDataPhysBCFunct::() 41 0.02895 0.03221 0.03649 1.13% StateData::FillBoundary(geom) 41 0.02886 0.03211 0.03639 1.13% Castro::construct_new_source() 50 0.02858 0.03052 0.03417 1.06% Gravity::interpolate_monopole_grav() 21 0.02708 0.02754 0.02785 0.86% Castro::construct_new_gravity_source() 10 0.02277 0.02451 0.02778 0.86% Castro::finalize_do_advance() 10 0.01136 0.01857 0.02395 0.74% Castro::post_init() 1 0.02299 0.02342 0.02362 0.73% Amr::writePlotFile() 2 0.02169 0.02181 0.02219 0.69% Castro::post_timestep() 10 0.01569 0.01602 0.01647 0.51% Castro::apply_source_to_state() 20 0.01078 0.01247 0.01358 0.42% FabArray::Saxpy() 20 0.01073 0.01242 0.01353 0.42% VisMF::Write(FabArray) 2 0.009245 0.009787 0.01305 0.40% Castro::check_for_nan() 20 0.01036 0.01128 0.0128 0.40% MultiFab::contains_nan() 20 0.01033 0.01125 0.01277 0.40% FabArray::setDomainBndry() 41 0.009281 0.01074 0.0122 0.38% Castro::Castro() 1 0.009844 0.0108 0.01163 0.36% Castro::construct_old_source() 50 0.006978 0.00953 0.0101 0.31% Castro::construct_old_gravity_source() 10 0.00693 0.00946 0.01002 0.31% Castro::computeNewDt() 9 0.008453 0.008469 0.008485 0.26% Castro::initMFs() 1 0.006379 0.007046 0.007814 0.24% Other 261 0.02467 0.02887 0.0316 0.98% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 34 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8657 KiB 8669 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6772 KiB 6776 KiB 6778 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4558 KiB 4569 KiB 4582 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 210 KiB 233 KiB 249 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2808 KiB 2811 KiB 2812 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 237 KiB 246 KiB 256 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 44 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 81 KiB 82 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 73 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.01-9-ge761abff95af) finalized