Initializing AMReX (25.01-9-ge761abff95af)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.01-9-ge761abff95af) initialized Starting run at 06:19:24 UTC on 2025-01-15. Successfully read inputs file ... Castro git describe: 25.01-2-g1d40334d3 AMReX git describe: 25.01-9-ge761abff9 Microphysics git describe: 25.01-23-gaeef4326 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.021890679 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.424809069 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.375991854 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.360939448 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.371715351 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.350883695 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.330425421 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.336848769 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.328902031 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.328782469 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.338497821 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.011750597 seconds Ending run at 06:19:27 UTC on 2025-01-15. Run time = 3.802533044 Run time without initialization = 3.567788026 Average number of zones advanced per microsecond: 0.735 Average number of zones advanced per microsecond per rank: 0.092 TinyProfiler total time across processes [min...avg...max]: 3.8004 ... 3.8019 ... 3.8026 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1797 2.3540 2.4699 64.95% Gravity::make_radial_gravity() 21 0.3213 0.3254 0.332 8.73% check_for_negative_density() 10 0.01446 0.1388 0.3177 8.35% Castro::estTimeStep() 21 0.0289 0.0984 0.1461 3.84% Castro::initData() 1 0.03698 0.08098 0.1438 3.78% amrex::Copy() 193 0.1048 0.1122 0.1196 3.15% FabArray::setVal() 143 0.09532 0.1015 0.1073 2.82% FabArray::ParallelCopy_finish() 41 0.05911 0.06552 0.07242 1.90% FabArray::ParallelCopy_nowait() 41 0.05426 0.05697 0.05909 1.55% Castro::normalize_species() 62 0.0455 0.04821 0.05774 1.52% Castro::reset_internal_energy(Fab) 1008 0.04822 0.05132 0.05297 1.39% FillPatchIterator::Initialize 41 0.04645 0.04816 0.05004 1.32% StateData::FillBoundary(geom) 41 0.03472 0.03793 0.04036 1.06% Castro::construct_new_gravity_source() 10 0.02903 0.03258 0.03477 0.91% Gravity::interpolate_monopole_grav() 21 0.02709 0.02787 0.02912 0.77% Castro::initialize_do_advance() 10 0.02097 0.02356 0.02563 0.67% FabArray::Saxpy() 20 0.01944 0.02033 0.02093 0.55% Castro::computeTemp() 63 0.0194 0.02008 0.0206 0.54% FabArray::setDomainBndry() 41 0.0144 0.01682 0.01896 0.50% VisMF::Write(FabArray) 2 0.01269 0.01364 0.01773 0.47% Castro::initialize_advance() 10 0.0155 0.01646 0.01729 0.45% Amr::writePlotFile() 2 0.01049 0.01536 0.01708 0.45% Castro::construct_old_gravity_source() 10 0.01504 0.01608 0.01683 0.44% MultiFab::contains_nan() 20 0.01317 0.01431 0.01534 0.40% Castro::initMFs() 1 0.008644 0.01048 0.01468 0.39% StateData::define() 4 0.007266 0.008397 0.01094 0.29% Castro::construct_new_source() 50 0.006998 0.008304 0.009024 0.24% main() 1 0.00565 0.00719 0.00781 0.21% Gravity::get_new_grav_vector() 11 0.003694 0.004134 0.004641 0.12% Amr::coarseTimeStep() 10 0.00195 0.002839 0.004149 0.11% Gravity::get_old_grav_vector() 10 0.001868 0.002523 0.003239 0.09% AmrLevel::FillPatch() 41 0.001229 0.001585 0.001746 0.05% Castro::finalize_do_advance() 10 0.001136 0.001307 0.00137 0.04% Castro::reset_internal_energy(MultiFab) 63 0.0003226 0.0003501 0.0003973 0.01% Amr::timeStep() 10 0.0001655 0.0002358 0.0003949 0.01% Castro::do_advance_ctu() 10 0.0001823 0.0002085 0.0002378 0.01% Castro::clean_state() 62 0.0001708 0.0001929 0.0002241 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001277 0.0001485 0.0001817 0.00% FabArray::ParallelCopy() 41 0.0001155 0.0001333 0.0001588 0.00% StateDataPhysBCFunct::() 41 0.0001258 0.000137 0.0001504 0.00% Castro::do_old_sources() 10 9.889e-05 0.0001226 0.0001458 0.00% Castro::Castro() 1 6.533e-05 0.0001065 0.0001316 0.00% Castro::construct_old_source() 50 8.699e-05 0.0001101 0.0001242 0.00% FillPatchSingleLevel 41 8.255e-05 9.282e-05 0.0001033 0.00% Castro::do_new_sources() 10 6.601e-05 7.365e-05 8.687e-05 0.00% Castro::apply_source_to_state() 20 5.968e-05 7.327e-05 8.275e-05 0.00% Castro::subcycle_advance_ctu() 10 5.955e-05 7.005e-05 7.927e-05 0.00% Amr::FinalizeInit() 1 4.495e-06 1.458e-05 7.292e-05 0.00% Castro::advance() 10 4.778e-05 5.751e-05 6.72e-05 0.00% Castro::construct_old_gravity() 10 3.968e-05 4.885e-05 6.511e-05 0.00% Amr::defBaseLevel() 1 3.605e-05 4.939e-05 5.952e-05 0.00% Castro::construct_new_gravity() 10 3.492e-05 4.141e-05 5.462e-05 0.00% Castro::expand_state() 10 2.592e-05 3.028e-05 3.659e-05 0.00% Castro::check_for_nan() 20 2.866e-05 3.161e-05 3.489e-05 0.00% Castro::post_timestep() 10 1.565e-05 2.01e-05 2.361e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.145e-06 1.294e-05 2.127e-05 0.00% Castro::post_init() 1 1.013e-05 1.114e-05 1.378e-05 0.00% Amr::InitializeInit() 1 2.472e-06 5.257e-06 9.385e-06 0.00% Castro::computeInitialDt() 2 4.021e-06 4.57e-06 5.026e-06 0.00% Amr::init() 1 1.845e-06 2.672e-06 3.432e-06 0.00% Amr::initialInit() 1 1.532e-06 1.912e-06 2.195e-06 0.00% Other 265 0.01342 0.01627 0.01823 0.48% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.8 3.802 3.803 100.00% Amr::coarseTimeStep() 10 3.548 3.548 3.548 93.31% Amr::timeStep() 10 3.534 3.535 3.536 92.99% Castro::advance() 10 3.518 3.519 3.519 92.55% Castro::subcycle_advance_ctu() 10 3.406 3.41 3.415 89.82% Castro::do_advance_ctu() 10 3.406 3.41 3.415 89.81% Castro::construct_ctu_hydro_source() 10 2.508 2.516 2.521 66.29% Gravity::make_radial_gravity() 21 0.3456 0.3511 0.3595 9.45% check_for_negative_density() 10 0.01446 0.1388 0.3177 8.35% AmrLevel::FillPatch() 41 0.2638 0.2715 0.2774 7.29% Gravity::get_new_grav_vector() 11 0.2322 0.2339 0.2354 6.19% Amr::init() 1 0.2342 0.2343 0.2344 6.16% FillPatchIterator::Initialize 41 0.2195 0.226 0.2318 6.10% Castro::construct_old_gravity() 10 0.2142 0.2197 0.2267 5.96% Gravity::get_old_grav_vector() 10 0.2133 0.2187 0.2258 5.94% Castro::initialize_do_advance() 10 0.2 0.2061 0.2143 5.64% Amr::initialInit() 1 0.2108 0.2117 0.2127 5.59% Castro::construct_new_gravity() 10 0.2044 0.2057 0.2068 5.44% Amr::InitializeInit() 1 0.06371 0.1103 0.1793 4.72% Amr::defBaseLevel() 1 0.0637 0.1103 0.1793 4.72% FillPatchIterator::FillFromLevel0() 41 0.1519 0.1611 0.1683 4.43% FillPatchSingleLevel 41 0.1518 0.1609 0.1682 4.42% Castro::do_old_sources() 10 0.1399 0.1436 0.1511 3.97% Castro::initData() 1 0.04144 0.08545 0.1481 3.89% Amr::FinalizeInit() 1 0.03151 0.1014 0.1472 3.87% Castro::expand_state() 10 0.1341 0.14 0.1467 3.86% Castro::estTimeStep() 21 0.0289 0.0984 0.1461 3.84% Castro::clean_state() 62 0.1211 0.1264 0.1381 3.63% FabArray::ParallelCopy() 41 0.115 0.1228 0.1276 3.35% amrex::Copy() 193 0.1048 0.1122 0.1196 3.15% Castro::computeInitialDt() 2 0.002626 0.0717 0.1183 3.11% Castro::initialize_advance() 10 0.09819 0.1033 0.108 2.84% FabArray::setVal() 143 0.09532 0.1015 0.1073 2.82% Castro::do_new_sources() 10 0.07243 0.0798 0.08327 2.19% Castro::computeTemp() 63 0.06794 0.07175 0.07377 1.94% FabArray::ParallelCopy_finish() 41 0.05911 0.06552 0.07242 1.90% FabArray::ParallelCopy_nowait() 41 0.05438 0.0571 0.05926 1.56% Castro::normalize_species() 62 0.0455 0.04821 0.05774 1.52% Castro::reset_internal_energy(MultiFab) 63 0.04854 0.05167 0.05336 1.40% Castro::reset_internal_energy(Fab) 1008 0.04822 0.05132 0.05297 1.39% Castro::construct_new_source() 50 0.03602 0.04088 0.04363 1.15% StateDataPhysBCFunct::() 41 0.03487 0.03807 0.04048 1.06% StateData::FillBoundary(geom) 41 0.03472 0.03793 0.04036 1.06% Amr::writePlotFile() 2 0.03355 0.03451 0.03532 0.93% Castro::construct_new_gravity_source() 10 0.02903 0.03258 0.03477 0.91% Castro::post_init() 1 0.02843 0.02932 0.03033 0.80% Gravity::interpolate_monopole_grav() 21 0.02709 0.02787 0.02912 0.77% Castro::finalize_do_advance() 10 0.01498 0.0191 0.02782 0.73% Castro::apply_source_to_state() 20 0.01951 0.0204 0.02101 0.55% FabArray::Saxpy() 20 0.01944 0.02033 0.02093 0.55% Castro::Castro() 1 0.01401 0.01623 0.02017 0.53% FabArray::setDomainBndry() 41 0.0144 0.01682 0.01896 0.50% VisMF::Write(FabArray) 2 0.01269 0.01364 0.01773 0.47% Castro::post_timestep() 10 0.01579 0.01635 0.01713 0.45% Castro::construct_old_source() 50 0.01515 0.01619 0.01695 0.45% Castro::construct_old_gravity_source() 10 0.01504 0.01608 0.01683 0.44% Castro::check_for_nan() 20 0.01321 0.01434 0.01537 0.40% MultiFab::contains_nan() 20 0.01317 0.01431 0.01534 0.40% Castro::initMFs() 1 0.008644 0.01048 0.01468 0.39% AmrLevel::AmrLevel(dm) 1 0.007277 0.00841 0.01096 0.29% StateData::define() 4 0.007266 0.008397 0.01094 0.29% Other 265 0.02822 0.03193 0.03458 0.91% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 25 B 32 B 49 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8647 KiB 8658 KiB 8664 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6683 KiB 6687 KiB 6688 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7138 KiB 7140 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4475 KiB 4480 KiB 4488 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 254 KiB 262 KiB 269 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 22 KiB 23 KiB 27 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2773 KiB 2775 KiB 2776 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 231 KiB 235 KiB 240 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 44 KiB 46 KiB 49 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 72 KiB 73 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.01-9-ge761abff95af) finalized