Initializing AMReX (25.01-10-ga74c72eab49a)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.01-10-ga74c72eab49a) initialized Starting run at 06:19:31 UTC on 2025-01-16. Successfully read inputs file ... Castro git describe: 25.01-2-g1d40334d3 AMReX git describe: 25.01-10-ga74c72eab Microphysics git describe: 25.01-23-gaeef4326 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014420258 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.325691526 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.302037586 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.30873598 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.293103128 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.330398659 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.298632871 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.284414798 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.284336268 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.282724848 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.283830819 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007868553 seconds Ending run at 06:19:34 UTC on 2025-01-16. Run time = 3.179749927 Run time without initialization = 3.006665548 Average number of zones advanced per microsecond: 0.872 Average number of zones advanced per microsecond per rank: 0.109 TinyProfiler total time across processes [min...avg...max]: 3.1796 ... 3.1797 ... 3.1798 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0384 2.1035 2.1386 67.26% Gravity::make_radial_gravity() 21 0.2893 0.2973 0.3139 9.87% check_for_negative_density() 10 0.01543 0.05444 0.1226 3.85% Castro::initData() 1 0.03855 0.07313 0.1089 3.43% Castro::estTimeStep() 21 0.02697 0.06647 0.1063 3.34% amrex::Copy() 193 0.06033 0.07509 0.0828 2.60% FabArray::ParallelCopy_finish() 41 0.03358 0.04731 0.07632 2.40% FabArray::setVal() 143 0.04833 0.06091 0.06874 2.16% Castro::reset_internal_energy(Fab) 1008 0.0455 0.0466 0.04865 1.53% Castro::normalize_species() 62 0.04506 0.04615 0.04699 1.48% FabArray::ParallelCopy_nowait() 41 0.03291 0.03868 0.04053 1.27% StateData::FillBoundary(geom) 41 0.02996 0.03201 0.03463 1.09% FillPatchIterator::Initialize 41 0.02818 0.03188 0.03397 1.07% Gravity::interpolate_monopole_grav() 21 0.02747 0.02788 0.02839 0.89% Castro::construct_new_gravity_source() 10 0.02121 0.02348 0.0252 0.79% Castro::initialize_do_advance() 10 0.0146 0.0162 0.01963 0.62% Castro::computeTemp() 63 0.01803 0.01829 0.0189 0.59% VisMF::Write(FabArray) 2 0.009347 0.009981 0.0131 0.41% Castro::initialize_advance() 10 0.005459 0.01042 0.01308 0.41% FabArray::Saxpy() 20 0.01022 0.01187 0.01258 0.40% FabArray::setDomainBndry() 41 0.007707 0.01054 0.01256 0.39% MultiFab::contains_nan() 20 0.0104 0.01102 0.01228 0.39% Amr::writePlotFile() 2 0.007704 0.009776 0.01035 0.33% Castro::initMFs() 1 0.007339 0.008205 0.009466 0.30% Castro::construct_old_gravity_source() 10 0.006574 0.008673 0.009165 0.29% Castro::construct_new_source() 50 0.005087 0.005753 0.006044 0.19% main() 1 0.004211 0.004314 0.004416 0.14% Gravity::get_new_grav_vector() 11 0.002948 0.003454 0.004346 0.14% Amr::coarseTimeStep() 10 0.0007202 0.001795 0.002559 0.08% Gravity::get_old_grav_vector() 10 0.00147 0.001925 0.002463 0.08% Castro::finalize_do_advance() 10 0.0004854 0.001107 0.001273 0.04% AmrLevel::FillPatch() 41 0.0008119 0.00101 0.001104 0.03% Amr::timeStep() 10 0.0001771 0.0002145 0.0003938 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002835 0.0002959 0.0003138 0.01% Castro::do_advance_ctu() 10 0.000131 0.0001518 0.000191 0.01% Castro::clean_state() 62 0.0001428 0.0001583 0.0001832 0.01% FillPatchIterator::FillFromLevel0() 41 9.519e-05 0.0001036 0.0001148 0.00% StateDataPhysBCFunct::() 41 8.488e-05 9.728e-05 0.0001052 0.00% FabArray::ParallelCopy() 41 8.917e-05 9.497e-05 0.0001013 0.00% Castro::do_old_sources() 10 7.118e-05 8.52e-05 9.778e-05 0.00% Amr::FinalizeInit() 1 4.098e-06 1.446e-05 8.166e-05 0.00% Castro::Castro() 1 5.03e-05 6.512e-05 7.58e-05 0.00% Castro::construct_old_source() 50 5.424e-05 6.685e-05 7.486e-05 0.00% Castro::do_new_sources() 10 5.398e-05 6.064e-05 7.349e-05 0.00% FillPatchSingleLevel 41 6.236e-05 6.384e-05 6.667e-05 0.00% Castro::apply_source_to_state() 20 3.938e-05 4.774e-05 6.637e-05 0.00% Castro::advance() 10 3.817e-05 4.341e-05 5.124e-05 0.00% Castro::subcycle_advance_ctu() 10 3.953e-05 4.272e-05 4.694e-05 0.00% Amr::defBaseLevel() 1 2.773e-05 3.654e-05 4.447e-05 0.00% Castro::construct_old_gravity() 10 3.341e-05 3.683e-05 4.082e-05 0.00% Castro::construct_new_gravity() 10 2.893e-05 3.372e-05 3.975e-05 0.00% Castro::expand_state() 10 1.903e-05 2.345e-05 3.131e-05 0.00% Castro::check_for_nan() 20 2.424e-05 2.581e-05 2.916e-05 0.00% Castro::post_timestep() 10 1.387e-05 1.526e-05 1.633e-05 0.00% Castro::computeNewDt() 9 8.895e-06 1.016e-05 1.342e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.606e-06 1.018e-05 1.25e-05 0.00% Castro::post_init() 1 9.615e-06 1.051e-05 1.226e-05 0.00% Amr::InitializeInit() 1 2.539e-06 3.395e-06 6.176e-06 0.00% Castro::computeInitialDt() 2 3.847e-06 4.278e-06 4.949e-06 0.00% Amr::init() 1 2.042e-06 2.339e-06 3.104e-06 0.00% Amr::initialInit() 1 1.337e-06 1.8e-06 2.085e-06 0.00% Other 260 0.01555 0.01873 0.02026 0.64% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.18 3.18 3.18 100.00% Amr::coarseTimeStep() 10 2.994 2.994 2.994 94.17% Amr::timeStep() 10 2.982 2.982 2.984 93.83% Castro::advance() 10 2.966 2.966 2.967 93.30% Castro::subcycle_advance_ctu() 10 2.893 2.899 2.913 91.61% Castro::do_advance_ctu() 10 2.893 2.899 2.913 91.61% Castro::construct_ctu_hydro_source() 10 2.176 2.18 2.182 68.63% Gravity::make_radial_gravity() 21 0.3052 0.3129 0.3267 10.27% Gravity::get_new_grav_vector() 11 0.2074 0.2087 0.2097 6.59% AmrLevel::FillPatch() 41 0.1783 0.1918 0.2028 6.38% Castro::construct_old_gravity() 10 0.1796 0.1839 0.1951 6.13% Gravity::get_old_grav_vector() 10 0.1789 0.1833 0.1946 6.12% Castro::construct_new_gravity() 10 0.1856 0.1868 0.1879 5.91% FillPatchIterator::Initialize 41 0.1501 0.1609 0.1781 5.60% Amr::init() 1 0.1725 0.1727 0.1727 5.43% Castro::initialize_do_advance() 10 0.1533 0.1628 0.17 5.35% Amr::initialInit() 1 0.1579 0.1584 0.1585 4.99% FillPatchIterator::FillFromLevel0() 41 0.1092 0.1185 0.1401 4.41% FillPatchSingleLevel 41 0.1091 0.1183 0.14 4.40% Amr::InitializeInit() 1 0.06063 0.09489 0.1322 4.16% Amr::defBaseLevel() 1 0.06063 0.09488 0.1322 4.16% check_for_negative_density() 10 0.01543 0.05444 0.1226 3.85% Castro::clean_state() 62 0.1139 0.1166 0.12 3.77% Castro::expand_state() 10 0.1007 0.1098 0.1184 3.72% Castro::initData() 1 0.04236 0.07684 0.1125 3.54% FabArray::ParallelCopy() 41 0.07428 0.08617 0.1094 3.44% Castro::estTimeStep() 21 0.02697 0.06647 0.1063 3.34% Amr::FinalizeInit() 1 0.02635 0.06351 0.09778 3.08% Castro::do_old_sources() 10 0.08711 0.08893 0.09012 2.83% amrex::Copy() 193 0.06033 0.07509 0.0828 2.60% FabArray::ParallelCopy_finish() 41 0.03358 0.04731 0.07632 2.40% Castro::computeInitialDt() 2 0.003058 0.04032 0.0746 2.35% Castro::initialize_advance() 10 0.04948 0.06462 0.07034 2.21% FabArray::setVal() 143 0.04833 0.06091 0.06874 2.16% Castro::do_new_sources() 10 0.05642 0.06259 0.06811 2.14% Castro::computeTemp() 63 0.06388 0.06519 0.06785 2.13% Castro::reset_internal_energy(MultiFab) 63 0.04578 0.0469 0.04895 1.54% Castro::reset_internal_energy(Fab) 1008 0.0455 0.0466 0.04865 1.53% Castro::normalize_species() 62 0.04506 0.04615 0.04699 1.48% FabArray::ParallelCopy_nowait() 41 0.03302 0.03877 0.04062 1.28% StateDataPhysBCFunct::() 41 0.03004 0.03211 0.03472 1.09% StateData::FillBoundary(geom) 41 0.02996 0.03201 0.03463 1.09% Castro::construct_new_source() 50 0.0263 0.02923 0.03124 0.98% Gravity::interpolate_monopole_grav() 21 0.02747 0.02788 0.02839 0.89% Castro::construct_new_gravity_source() 10 0.02121 0.02348 0.0252 0.79% Castro::finalize_do_advance() 10 0.01225 0.01861 0.02473 0.78% Castro::post_init() 1 0.02266 0.02303 0.02319 0.73% Amr::writePlotFile() 2 0.02212 0.02225 0.02253 0.71% Castro::post_timestep() 10 0.01546 0.01588 0.01683 0.53% VisMF::Write(FabArray) 2 0.009347 0.009981 0.0131 0.41% Castro::Castro() 1 0.01061 0.01167 0.01299 0.41% Castro::apply_source_to_state() 20 0.01026 0.01192 0.01263 0.40% FabArray::Saxpy() 20 0.01022 0.01187 0.01258 0.40% FabArray::setDomainBndry() 41 0.007707 0.01054 0.01256 0.39% Castro::check_for_nan() 20 0.01042 0.01105 0.01231 0.39% MultiFab::contains_nan() 20 0.0104 0.01102 0.01228 0.39% Castro::initMFs() 1 0.007339 0.008205 0.009466 0.30% Castro::construct_old_source() 50 0.006628 0.00874 0.00924 0.29% Castro::construct_old_gravity_source() 10 0.006574 0.008673 0.009165 0.29% Castro::computeNewDt() 9 0.008635 0.008659 0.008673 0.27% AmrLevel::AmrLevel(dm) 1 0.005717 0.006135 0.006533 0.21% Other 260 0.01984 0.02368 0.02568 0.81% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 38 B 43 B 57 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8654 KiB 8666 KiB 8669 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6742 KiB 6746 KiB 6747 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4546 KiB 4554 KiB 4572 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 211 KiB 229 KiB 244 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 18 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2794 KiB 2798 KiB 2799 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 244 KiB 250 KiB 262 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 42 KiB 54 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 83 KiB 84 KiB 84 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 72 KiB 74 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.01-10-ga74c72eab49a) finalized