Initializing AMReX (25.01-10-ga74c72eab49a)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.01-10-ga74c72eab49a) initialized Starting run at 06:28:23 UTC on 2025-01-17. Successfully read inputs file ... Castro git describe: 25.01-2-g1d40334d3 AMReX git describe: 25.01-10-ga74c72eab Microphysics git describe: 25.01-28-g8426a56c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.058563688 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.33996069 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.322968249 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.312050515 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.30879584 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.36258017 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.294980942 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.284246661 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.29465425 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.289500456 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.290997291 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007836008 seconds Ending run at 06:28:26 UTC on 2025-01-17. Run time = 3.334053347 Run time without initialization = 3.113608019 Average number of zones advanced per microsecond: 0.842 Average number of zones advanced per microsecond per rank: 0.105 TinyProfiler total time across processes [min...avg...max]: 3.3335 ... 3.3337 ... 3.3341 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0692 2.1324 2.1820 65.44% Gravity::make_radial_gravity() 21 0.2937 0.3028 0.3218 9.65% check_for_negative_density() 10 0.03056 0.09189 0.1598 4.79% Castro::initData() 1 0.03702 0.07453 0.1125 3.37% Castro::estTimeStep() 21 0.02528 0.06778 0.1089 3.27% amrex::Copy() 193 0.06688 0.0826 0.09665 2.90% FabArray::ParallelCopy_finish() 41 0.03576 0.06035 0.08951 2.68% FabArray::setVal() 143 0.06403 0.06858 0.07609 2.28% Amr::writePlotFile() 2 0.05304 0.0545 0.05484 1.64% Castro::reset_internal_energy(Fab) 1008 0.04389 0.04596 0.04845 1.45% Castro::normalize_species() 62 0.04465 0.04564 0.0478 1.43% FabArray::ParallelCopy_nowait() 41 0.03572 0.04139 0.0435 1.30% FillPatchIterator::Initialize 41 0.02843 0.03393 0.03709 1.11% StateData::FillBoundary(geom) 41 0.02874 0.03284 0.03638 1.09% Gravity::interpolate_monopole_grav() 21 0.0267 0.02739 0.02966 0.89% Castro::construct_new_gravity_source() 10 0.02319 0.02428 0.02683 0.80% Castro::computeTemp() 63 0.01668 0.01808 0.01925 0.58% Castro::initialize_do_advance() 10 0.01218 0.01636 0.01735 0.52% Castro::initialize_advance() 10 0.0106 0.01211 0.01467 0.44% FabArray::Saxpy() 20 0.01046 0.01222 0.01342 0.40% FabArray::setDomainBndry() 41 0.00745 0.011 0.01304 0.39% MultiFab::contains_nan() 20 0.0105 0.01153 0.01299 0.39% VisMF::Write(FabArray) 2 0.009206 0.009625 0.01157 0.35% Castro::construct_old_gravity_source() 10 0.007036 0.009077 0.009876 0.30% Castro::initMFs() 1 0.006368 0.007021 0.007617 0.23% Castro::construct_new_source() 50 0.005442 0.005922 0.006206 0.19% main() 1 0.003995 0.004227 0.004601 0.14% Gravity::get_new_grav_vector() 11 0.002879 0.003408 0.003902 0.12% Amr::coarseTimeStep() 10 0.0009872 0.001769 0.002938 0.09% Gravity::get_old_grav_vector() 10 0.001422 0.002163 0.002742 0.08% AmrLevel::FillPatch() 41 0.000751 0.001161 0.001268 0.04% Castro::finalize_do_advance() 10 0.0004902 0.0009842 0.001161 0.03% Amr::timeStep() 10 0.0001549 0.0002124 0.0003797 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002853 0.0003073 0.0003405 0.01% Castro::do_advance_ctu() 10 0.0001434 0.0001576 0.0001751 0.01% StateDataPhysBCFunct::() 41 9.555e-05 0.0001187 0.0001607 0.00% Castro::clean_state() 62 0.0001348 0.000148 0.0001577 0.00% FillPatchIterator::FillFromLevel0() 41 9.17e-05 0.0001023 0.0001144 0.00% FabArray::ParallelCopy() 41 8.303e-05 9.603e-05 0.0001129 0.00% Castro::do_old_sources() 10 7.612e-05 9.231e-05 0.0001119 0.00% Amr::FinalizeInit() 1 3.962e-06 1.566e-05 9.327e-05 0.00% Castro::construct_old_source() 50 5.988e-05 6.96e-05 8.325e-05 0.00% Castro::Castro() 1 5.602e-05 7.154e-05 8.295e-05 0.00% FillPatchSingleLevel 41 6.239e-05 6.702e-05 7.536e-05 0.00% Castro::do_new_sources() 10 4.988e-05 5.974e-05 7.136e-05 0.00% Castro::subcycle_advance_ctu() 10 3.879e-05 5.008e-05 6.547e-05 0.00% Castro::apply_source_to_state() 20 4.398e-05 5.053e-05 6.087e-05 0.00% Castro::construct_old_gravity() 10 3.657e-05 4.259e-05 5.444e-05 0.00% Castro::advance() 10 3.662e-05 4.568e-05 5.266e-05 0.00% Castro::construct_new_gravity() 10 3.039e-05 3.682e-05 4.834e-05 0.00% Amr::defBaseLevel() 1 2.648e-05 3.441e-05 4.237e-05 0.00% Castro::expand_state() 10 2.027e-05 2.514e-05 3.583e-05 0.00% Castro::post_timestep() 10 1.371e-05 1.896e-05 3.092e-05 0.00% Castro::check_for_nan() 20 2.379e-05 2.683e-05 2.888e-05 0.00% Castro::post_init() 1 8.707e-06 1.078e-05 1.467e-05 0.00% Castro::computeNewDt() 9 8.785e-06 9.844e-06 1.053e-05 0.00% Amr::InitializeInit() 1 2.802e-06 3.527e-06 6.145e-06 0.00% Castro::computeInitialDt() 2 3.042e-06 3.666e-06 5.598e-06 0.00% Amr::init() 1 2.01e-06 2.405e-06 3.14e-06 0.00% Amr::initialInit() 1 1.312e-06 1.812e-06 2.45e-06 0.00% Other 261 0.01537 0.01829 0.01988 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.334 3.334 3.334 100.00% Amr::coarseTimeStep() 10 3.101 3.101 3.101 93.02% Amr::timeStep() 10 3.089 3.09 3.09 92.69% Castro::advance() 10 3.073 3.074 3.074 92.20% Castro::subcycle_advance_ctu() 10 2.994 2.998 3.003 90.08% Castro::do_advance_ctu() 10 2.994 2.998 3.003 90.08% Castro::construct_ctu_hydro_source() 10 2.234 2.245 2.25 67.48% Gravity::make_radial_gravity() 21 0.3104 0.3194 0.336 10.08% AmrLevel::FillPatch() 41 0.1948 0.2144 0.2267 6.80% Amr::init() 1 0.2198 0.22 0.2201 6.60% Castro::construct_old_gravity() 10 0.1937 0.1996 0.2146 6.44% Gravity::get_old_grav_vector() 10 0.1929 0.1989 0.2139 6.42% Gravity::get_new_grav_vector() 11 0.2066 0.2078 0.2092 6.27% FillPatchIterator::Initialize 41 0.1594 0.18 0.1903 5.71% Castro::construct_new_gravity() 10 0.1831 0.1846 0.1853 5.56% Castro::initialize_do_advance() 10 0.1545 0.164 0.1687 5.06% Amr::initialInit() 1 0.1611 0.1612 0.1613 4.84% check_for_negative_density() 10 0.03056 0.09189 0.1598 4.79% FillPatchIterator::FillFromLevel0() 41 0.1099 0.1351 0.1544 4.63% FillPatchSingleLevel 41 0.1098 0.135 0.1543 4.63% Amr::InitializeInit() 1 0.05658 0.09527 0.1341 4.02% Amr::defBaseLevel() 1 0.05657 0.09527 0.1341 4.02% FabArray::ParallelCopy() 41 0.07781 0.1019 0.1254 3.76% Castro::clean_state() 62 0.1118 0.1152 0.1195 3.59% Castro::initData() 1 0.04094 0.07837 0.116 3.48% Castro::expand_state() 10 0.105 0.1108 0.1157 3.47% Castro::do_old_sources() 10 0.0938 0.1063 0.1151 3.45% Castro::estTimeStep() 21 0.02528 0.06778 0.1089 3.27% Amr::FinalizeInit() 1 0.02707 0.06595 0.1047 3.14% amrex::Copy() 193 0.06688 0.0826 0.09665 2.90% FabArray::ParallelCopy_finish() 41 0.03576 0.06035 0.08951 2.68% Castro::computeInitialDt() 2 0.002387 0.04121 0.07992 2.40% Castro::initialize_advance() 10 0.06662 0.07219 0.07629 2.29% FabArray::setVal() 143 0.06403 0.06858 0.07609 2.28% Castro::computeTemp() 63 0.06156 0.06435 0.06802 2.04% Castro::do_new_sources() 10 0.05968 0.06273 0.06717 2.01% Amr::writePlotFile() 2 0.06667 0.06675 0.06682 2.00% Castro::reset_internal_energy(MultiFab) 63 0.04418 0.04627 0.04877 1.46% Castro::reset_internal_energy(Fab) 1008 0.04389 0.04596 0.04845 1.45% Castro::normalize_species() 62 0.04465 0.04564 0.0478 1.43% FabArray::ParallelCopy_nowait() 41 0.03582 0.04148 0.0436 1.31% StateDataPhysBCFunct::() 41 0.02884 0.03296 0.03655 1.10% StateData::FillBoundary(geom) 41 0.02874 0.03284 0.03638 1.09% Castro::construct_new_source() 50 0.02892 0.03021 0.03283 0.98% Gravity::interpolate_monopole_grav() 21 0.0267 0.02739 0.02966 0.89% Castro::construct_new_gravity_source() 10 0.02319 0.02428 0.02683 0.80% Castro::post_init() 1 0.02435 0.02447 0.02457 0.74% Castro::finalize_do_advance() 10 0.01351 0.01911 0.0228 0.68% Castro::post_timestep() 10 0.01448 0.01567 0.01624 0.49% Castro::apply_source_to_state() 20 0.01051 0.01227 0.01348 0.40% FabArray::Saxpy() 20 0.01046 0.01222 0.01342 0.40% FabArray::setDomainBndry() 41 0.00745 0.011 0.01304 0.39% Castro::check_for_nan() 20 0.01053 0.01156 0.01301 0.39% MultiFab::contains_nan() 20 0.0105 0.01153 0.01299 0.39% Castro::Castro() 1 0.009556 0.01088 0.01182 0.35% VisMF::Write(FabArray) 2 0.009206 0.009625 0.01157 0.35% Castro::construct_old_source() 50 0.007103 0.009147 0.00995 0.30% Castro::construct_old_gravity_source() 10 0.007036 0.009077 0.009876 0.30% Castro::computeNewDt() 9 0.008445 0.008457 0.008468 0.25% Castro::initMFs() 1 0.006368 0.007021 0.007617 0.23% Other 261 0.02534 0.02917 0.03154 0.95% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 33 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8670 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6657 KiB 6662 KiB 6663 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4487 KiB 4492 KiB 4498 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 219 KiB 236 KiB 247 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2761 KiB 2765 KiB 2766 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 237 KiB 244 KiB 256 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 44 KiB 54 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 74 KiB 76 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.01-10-ga74c72eab49a) finalized