Initializing AMReX (25.01-16-g92d35c2c8163)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.01-16-g92d35c2c8163) initialized Starting run at 06:39:38 UTC on 2025-01-20. Successfully read inputs file ... Castro git describe: 25.01-5-g046cf076f AMReX git describe: 25.01-16-g92d35c2c8 Microphysics git describe: 25.01-29-g66a8b4a8 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01469658 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.336196273 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.332820251 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.307618875 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.309249104 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.363220314 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.301247589 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.291552079 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.337688866 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.31788868 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.301698571 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009155018 seconds Ending run at 06:39:42 UTC on 2025-01-20. Run time = 3.395450045 Run time without initialization = 3.214440826 Average number of zones advanced per microsecond: 0.816 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3936 ... 3.3947 ... 3.3955 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1518 2.2035 2.2889 67.41% Gravity::make_radial_gravity() 21 0.2937 0.3012 0.3164 9.32% check_for_negative_density() 10 0.03985 0.1289 0.1845 5.43% Castro::initData() 1 0.04662 0.07859 0.1169 3.44% Castro::estTimeStep() 21 0.02428 0.06741 0.1023 3.01% FabArray::ParallelCopy_finish() 41 0.04306 0.0562 0.09 2.65% amrex::Copy() 193 0.06557 0.07849 0.08732 2.57% FabArray::setVal() 143 0.05772 0.06708 0.07223 2.13% Castro::reset_internal_energy(Fab) 1008 0.04616 0.04711 0.04799 1.41% Castro::normalize_species() 62 0.04614 0.04663 0.04734 1.39% FabArray::ParallelCopy_nowait() 41 0.03508 0.04041 0.04207 1.24% StateData::FillBoundary(geom) 41 0.02991 0.03303 0.03663 1.08% FillPatchIterator::Initialize 41 0.02777 0.03198 0.03448 1.02% Gravity::interpolate_monopole_grav() 21 0.02748 0.02789 0.02859 0.84% Castro::construct_new_gravity_source() 10 0.02334 0.02515 0.02721 0.80% Castro::computeTemp() 63 0.01854 0.01883 0.01906 0.56% Castro::initialize_do_advance() 10 0.01227 0.01615 0.01752 0.52% FabArray::Saxpy() 20 0.01024 0.01259 0.01442 0.42% Castro::initialize_advance() 10 0.005647 0.01091 0.01378 0.41% VisMF::Write(FabArray) 2 0.009453 0.01036 0.01308 0.39% Amr::writePlotFile() 2 0.007894 0.01093 0.01298 0.38% MultiFab::contains_nan() 20 0.01095 0.01175 0.01292 0.38% FabArray::setDomainBndry() 41 0.00756 0.01021 0.01248 0.37% Castro::initMFs() 1 0.006649 0.008092 0.01054 0.31% Castro::construct_old_gravity_source() 10 0.006575 0.009192 0.01033 0.30% Castro::construct_new_source() 50 0.005711 0.006177 0.006468 0.19% main() 1 0.003698 0.004802 0.005567 0.16% Gravity::get_new_grav_vector() 11 0.003047 0.003587 0.003965 0.12% Gravity::get_old_grav_vector() 10 0.001637 0.002099 0.002637 0.08% Amr::coarseTimeStep() 10 0.001456 0.001863 0.002482 0.07% Castro::finalize_do_advance() 10 0.0005134 0.001175 0.001767 0.05% AmrLevel::FillPatch() 41 0.0007824 0.001147 0.001279 0.04% Amr::timeStep() 10 0.0001789 0.0002343 0.0004614 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002821 0.0002932 0.0003029 0.01% Castro::do_advance_ctu() 10 0.0001329 0.0001638 0.0001985 0.01% Castro::clean_state() 62 0.000144 0.0001575 0.0001702 0.01% FillPatchIterator::FillFromLevel0() 41 8.893e-05 0.0001044 0.00012 0.00% StateDataPhysBCFunct::() 41 9.281e-05 0.0001066 0.0001138 0.00% Castro::do_old_sources() 10 6.908e-05 8.843e-05 0.0001009 0.00% FabArray::ParallelCopy() 41 7.954e-05 9.24e-05 9.974e-05 0.00% Amr::FinalizeInit() 1 3.85e-06 1.506e-05 8.929e-05 0.00% Castro::Castro() 1 5.633e-05 7.06e-05 8.326e-05 0.00% Castro::construct_old_source() 50 4.193e-05 6.499e-05 7.423e-05 0.00% FillPatchSingleLevel 41 5.591e-05 6.492e-05 7.351e-05 0.00% Castro::do_new_sources() 10 5.66e-05 6.305e-05 6.847e-05 0.00% Castro::apply_source_to_state() 20 4.213e-05 4.71e-05 6.064e-05 0.00% Castro::subcycle_advance_ctu() 10 3.792e-05 5.086e-05 5.985e-05 0.00% Castro::advance() 10 3.766e-05 4.629e-05 5.474e-05 0.00% Amr::defBaseLevel() 1 2.867e-05 3.843e-05 4.867e-05 0.00% Castro::check_for_nan() 20 2.217e-05 2.712e-05 4.785e-05 0.00% Castro::construct_new_gravity() 10 3.13e-05 3.744e-05 4.628e-05 0.00% Castro::construct_old_gravity() 10 3.68e-05 3.998e-05 4.584e-05 0.00% Castro::expand_state() 10 1.995e-05 2.328e-05 3.185e-05 0.00% Castro::post_timestep() 10 1.355e-05 1.683e-05 1.91e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.881e-06 1.166e-05 1.811e-05 0.00% Castro::computeNewDt() 9 9.318e-06 1.042e-05 1.282e-05 0.00% Castro::post_init() 1 8.064e-06 9.263e-06 1.09e-05 0.00% Amr::init() 1 2.043e-06 3.047e-06 7.828e-06 0.00% Amr::InitializeInit() 1 2.644e-06 3.701e-06 6.319e-06 0.00% Castro::computeInitialDt() 2 3.001e-06 3.989e-06 4.781e-06 0.00% Amr::initialInit() 1 1.156e-06 1.597e-06 2.057e-06 0.00% Other 260 0.01649 0.01945 0.02274 0.67% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.394 3.395 3.396 100.00% Amr::coarseTimeStep() 10 3.2 3.2 3.2 94.24% Amr::timeStep() 10 3.187 3.188 3.188 93.90% Castro::advance() 10 3.171 3.172 3.172 93.42% Castro::subcycle_advance_ctu() 10 3.095 3.099 3.112 91.65% Castro::do_advance_ctu() 10 3.095 3.099 3.112 91.65% Castro::construct_ctu_hydro_source() 10 2.35 2.354 2.358 69.45% Gravity::make_radial_gravity() 21 0.3094 0.3168 0.3293 9.70% AmrLevel::FillPatch() 41 0.1946 0.2041 0.2155 6.35% Gravity::get_new_grav_vector() 11 0.208 0.2091 0.2104 6.20% Castro::construct_old_gravity() 10 0.188 0.1926 0.2031 5.98% Gravity::get_old_grav_vector() 10 0.1872 0.1919 0.2025 5.96% FillPatchIterator::Initialize 41 0.1632 0.1723 0.1907 5.62% Castro::construct_new_gravity() 10 0.1856 0.1862 0.1869 5.50% check_for_negative_density() 10 0.03985 0.1289 0.1845 5.43% Amr::init() 1 0.1805 0.1806 0.1807 5.32% Castro::initialize_do_advance() 10 0.1596 0.1656 0.1684 4.96% Amr::initialInit() 1 0.1652 0.1657 0.166 4.89% FillPatchIterator::FillFromLevel0() 41 0.1214 0.1301 0.1554 4.58% FillPatchSingleLevel 41 0.1213 0.13 0.1553 4.57% Amr::InitializeInit() 1 0.06808 0.1011 0.1388 4.09% Amr::defBaseLevel() 1 0.06807 0.1011 0.1388 4.09% FabArray::ParallelCopy() 41 0.08534 0.09679 0.1252 3.69% Castro::initData() 1 0.05058 0.08235 0.1207 3.56% Castro::clean_state() 62 0.1162 0.1182 0.1195 3.52% Castro::expand_state() 10 0.1042 0.1116 0.1186 3.49% Castro::estTimeStep() 21 0.02428 0.06741 0.1023 3.01% Castro::do_old_sources() 10 0.09538 0.09883 0.1018 3.00% Amr::FinalizeInit() 1 0.02632 0.0646 0.09756 2.87% FabArray::ParallelCopy_finish() 41 0.04306 0.0562 0.09 2.65% amrex::Copy() 193 0.06557 0.07849 0.08732 2.57% Castro::initialize_advance() 10 0.05544 0.06954 0.07304 2.15% Castro::computeInitialDt() 2 0.002128 0.0399 0.07283 2.14% FabArray::setVal() 143 0.05772 0.06708 0.07223 2.13% Castro::do_new_sources() 10 0.06125 0.06531 0.07064 2.08% Castro::computeTemp() 63 0.06502 0.06623 0.06728 1.98% Castro::reset_internal_energy(MultiFab) 63 0.04644 0.0474 0.04829 1.42% Castro::reset_internal_energy(Fab) 1008 0.04616 0.04711 0.04799 1.41% Castro::normalize_species() 62 0.04614 0.04663 0.04734 1.39% FabArray::ParallelCopy_nowait() 41 0.03517 0.04051 0.04218 1.24% StateDataPhysBCFunct::() 41 0.03 0.03313 0.03674 1.08% StateData::FillBoundary(geom) 41 0.02991 0.03303 0.03663 1.08% Castro::construct_new_source() 50 0.02943 0.03132 0.03367 0.99% Gravity::interpolate_monopole_grav() 21 0.02748 0.02789 0.02859 0.84% Castro::construct_new_gravity_source() 10 0.02334 0.02515 0.02721 0.80% Amr::writePlotFile() 2 0.02397 0.02413 0.02462 0.73% Castro::post_init() 1 0.02387 0.02418 0.02431 0.72% Castro::finalize_do_advance() 10 0.0149 0.01982 0.02377 0.70% Castro::post_timestep() 10 0.01592 0.01615 0.01678 0.49% Castro::Castro() 1 0.009883 0.01182 0.01469 0.43% Castro::apply_source_to_state() 20 0.01029 0.01264 0.01448 0.43% FabArray::Saxpy() 20 0.01024 0.01259 0.01442 0.42% VisMF::Write(FabArray) 2 0.009453 0.01036 0.01308 0.39% Castro::check_for_nan() 20 0.01098 0.01178 0.01294 0.38% MultiFab::contains_nan() 20 0.01095 0.01175 0.01292 0.38% FabArray::setDomainBndry() 41 0.00756 0.01021 0.01248 0.37% Castro::initMFs() 1 0.006649 0.008092 0.01054 0.31% Castro::construct_old_source() 50 0.006617 0.009257 0.0104 0.31% Castro::construct_old_gravity_source() 10 0.006575 0.009192 0.01033 0.30% Castro::computeNewDt() 9 0.008869 0.008881 0.008892 0.26% AmrLevel::AmrLevel(dm) 1 0.005646 0.006746 0.008633 0.25% Other 260 0.02111 0.02462 0.0283 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 37 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8656 KiB 8664 KiB 8670 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6747 KiB 6753 KiB 6757 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7138 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4552 KiB 4559 KiB 4580 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 212 KiB 225 KiB 239 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2798 KiB 2801 KiB 2802 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 232 KiB 237 KiB 247 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 43 KiB 57 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 72 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.01-16-g92d35c2c8163) finalized