Initializing AMReX (25.01-16-g92d35c2c8163)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.01-16-g92d35c2c8163) initialized Starting run at 06:28:48 UTC on 2025-01-21. Successfully read inputs file ... Castro git describe: 25.01-7-gf7c531104 AMReX git describe: 25.01-16-g92d35c2c8 Microphysics git describe: 25.01-30-ge3b281a9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.019941463 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.412883951 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.377208099 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.365909266 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.391012013 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.370016661 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.368936829 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.366686339 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.366243877 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.365684969 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.370062835 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012601954 seconds Ending run at 06:28:52 UTC on 2025-01-21. Run time = 3.963688769 Run time without initialization = 3.775623528 Average number of zones advanced per microsecond: 0.694 Average number of zones advanced per microsecond per rank: 0.087 TinyProfiler total time across processes [min...avg...max]: 3.9627 ... 3.9632 ... 3.9638 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1467 2.4568 2.6760 67.51% check_for_negative_density() 10 0.008862 0.2333 0.5517 13.92% Gravity::make_radial_gravity() 21 0.2941 0.313 0.3382 8.53% amrex::Copy() 193 0.09284 0.1147 0.1286 3.24% FabArray::setVal() 143 0.09216 0.1024 0.108 2.73% Castro::initData() 1 0.03836 0.07298 0.1047 2.64% Castro::estTimeStep() 21 0.02445 0.06174 0.1026 2.59% FabArray::ParallelCopy_finish() 41 0.05605 0.06831 0.08922 2.25% FabArray::ParallelCopy_nowait() 41 0.05616 0.06152 0.06447 1.63% FillPatchIterator::Initialize 41 0.04851 0.05572 0.06164 1.56% Castro::reset_internal_energy(Fab) 1008 0.04608 0.05035 0.05365 1.35% StateData::FillBoundary(geom) 41 0.03482 0.04004 0.04775 1.20% Castro::normalize_species() 62 0.04648 0.04694 0.04749 1.20% Castro::construct_new_gravity_source() 10 0.02947 0.03213 0.03521 0.89% Gravity::interpolate_monopole_grav() 21 0.02714 0.02819 0.02896 0.73% Castro::initialize_do_advance() 10 0.02343 0.0258 0.02782 0.70% FabArray::setDomainBndry() 41 0.01685 0.02132 0.02545 0.64% Castro::computeTemp() 63 0.01856 0.02002 0.0212 0.53% FabArray::Saxpy() 20 0.01821 0.01953 0.02108 0.53% VisMF::Write(FabArray) 2 0.01214 0.01398 0.01903 0.48% MultiFab::contains_nan() 20 0.01293 0.01501 0.01683 0.42% Castro::initialize_advance() 10 0.01518 0.01597 0.01669 0.42% Amr::writePlotFile() 2 0.009986 0.01435 0.01629 0.41% Castro::construct_old_gravity_source() 10 0.01463 0.01578 0.01628 0.41% Castro::initMFs() 1 0.008674 0.009512 0.01072 0.27% Castro::construct_new_source() 50 0.007065 0.008075 0.008877 0.22% main() 1 0.006833 0.00737 0.007926 0.20% Gravity::get_new_grav_vector() 11 0.004135 0.005316 0.00669 0.17% Gravity::get_old_grav_vector() 10 0.002617 0.002933 0.003217 0.08% Amr::coarseTimeStep() 10 0.0006961 0.001547 0.002404 0.06% AmrLevel::FillPatch() 41 0.001107 0.001319 0.001721 0.04% Castro::finalize_do_advance() 10 0.001157 0.001331 0.001401 0.04% Amr::timeStep() 10 0.0001449 0.00022 0.0005467 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003105 0.0003394 0.0003675 0.01% Castro::do_advance_ctu() 10 0.0001816 0.0002242 0.0002523 0.01% Castro::clean_state() 62 0.000185 0.0002014 0.0002263 0.01% Castro::Castro() 1 9.545e-05 0.0001345 0.0001745 0.00% StateDataPhysBCFunct::() 41 0.0001309 0.0001493 0.0001662 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001502 0.0001603 0.0001656 0.00% FabArray::ParallelCopy() 41 0.0001296 0.0001414 0.0001612 0.00% Castro::do_old_sources() 10 0.0001225 0.0001298 0.0001384 0.00% Castro::construct_old_source() 50 0.0001002 0.0001133 0.0001236 0.00% FillPatchSingleLevel 41 8.689e-05 9.811e-05 0.000109 0.00% Amr::FinalizeInit() 1 4.97e-06 2.039e-05 0.0001086 0.00% Castro::apply_source_to_state() 20 6.472e-05 7.472e-05 9.332e-05 0.00% Castro::do_new_sources() 10 7.66e-05 8.431e-05 9.255e-05 0.00% Castro::subcycle_advance_ctu() 10 6.282e-05 6.948e-05 8.038e-05 0.00% Castro::advance() 10 4.906e-05 5.763e-05 7.338e-05 0.00% Castro::construct_new_gravity() 10 3.262e-05 4.56e-05 6.241e-05 0.00% Amr::defBaseLevel() 1 2.911e-05 4.601e-05 5.492e-05 0.00% Castro::construct_old_gravity() 10 4.335e-05 5.005e-05 5.416e-05 0.00% Castro::expand_state() 10 3.108e-05 4.074e-05 4.989e-05 0.00% Castro::check_for_nan() 20 2.688e-05 3.36e-05 3.785e-05 0.00% Castro::post_timestep() 10 1.862e-05 2.205e-05 2.946e-05 0.00% Castro::post_init() 1 9.69e-06 1.274e-05 1.951e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.648e-06 1.199e-05 1.534e-05 0.00% Castro::computeNewDt() 9 9.356e-06 1.127e-05 1.271e-05 0.00% Amr::init() 1 2.272e-06 4.902e-06 1.138e-05 0.00% Castro::computeInitialDt() 2 4.428e-06 4.984e-06 6.016e-06 0.00% Amr::InitializeInit() 1 2.646e-06 3.563e-06 5.324e-06 0.00% Amr::initialInit() 1 1.776e-06 2.349e-06 2.946e-06 0.00% Other 260 0.01983 0.02338 0.02501 0.63% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.963 3.963 3.964 100.00% Amr::coarseTimeStep() 10 3.755 3.755 3.755 94.74% Amr::timeStep() 10 3.741 3.742 3.743 94.43% Castro::advance() 10 3.726 3.726 3.727 94.02% Castro::subcycle_advance_ctu() 10 3.617 3.621 3.631 91.60% Castro::do_advance_ctu() 10 3.616 3.621 3.631 91.60% Castro::construct_ctu_hydro_source() 10 2.706 2.713 2.72 68.62% check_for_negative_density() 10 0.008862 0.2333 0.5517 13.92% Gravity::make_radial_gravity() 21 0.3172 0.3356 0.3598 9.08% AmrLevel::FillPatch() 41 0.2773 0.2967 0.3156 7.96% FillPatchIterator::Initialize 41 0.237 0.2476 0.2591 6.54% Castro::initialize_do_advance() 10 0.2246 0.2383 0.2507 6.32% Gravity::get_new_grav_vector() 11 0.2326 0.2342 0.2356 5.94% Castro::construct_old_gravity() 10 0.1937 0.2068 0.226 5.70% Gravity::get_old_grav_vector() 10 0.1928 0.2059 0.2252 5.68% Castro::construct_new_gravity() 10 0.2043 0.2054 0.2065 5.21% Amr::init() 1 0.1875 0.1877 0.1877 4.74% Castro::expand_state() 10 0.1524 0.1675 0.1824 4.60% FillPatchIterator::FillFromLevel0() 41 0.1585 0.1706 0.1809 4.56% FillPatchSingleLevel 41 0.1584 0.1704 0.1808 4.56% Amr::initialInit() 1 0.1668 0.167 0.1674 4.22% FabArray::ParallelCopy() 41 0.1184 0.1301 0.1457 3.68% Castro::do_old_sources() 10 0.1375 0.1396 0.1429 3.60% Amr::InitializeInit() 1 0.06575 0.1016 0.1342 3.38% Amr::defBaseLevel() 1 0.06575 0.1016 0.1341 3.38% amrex::Copy() 193 0.09284 0.1147 0.1286 3.24% Castro::clean_state() 62 0.1192 0.1243 0.1284 3.24% Castro::initData() 1 0.04365 0.07766 0.1099 2.77% FabArray::setVal() 143 0.09216 0.1024 0.108 2.73% Castro::initialize_advance() 10 0.0903 0.1001 0.1047 2.64% Castro::estTimeStep() 21 0.02445 0.06174 0.1026 2.59% Amr::FinalizeInit() 1 0.03268 0.06531 0.1012 2.55% FabArray::ParallelCopy_finish() 41 0.05605 0.06831 0.08922 2.25% Castro::do_new_sources() 10 0.07299 0.07913 0.08488 2.14% Castro::computeTemp() 63 0.06497 0.07071 0.07503 1.89% Castro::computeInitialDt() 2 0.002334 0.03482 0.07073 1.78% FabArray::ParallelCopy_nowait() 41 0.05632 0.06167 0.06461 1.63% Castro::reset_internal_energy(MultiFab) 63 0.04641 0.05069 0.05402 1.36% Castro::reset_internal_energy(Fab) 1008 0.04608 0.05035 0.05365 1.35% StateDataPhysBCFunct::() 41 0.03497 0.04019 0.0479 1.21% StateData::FillBoundary(geom) 41 0.03482 0.04004 0.04775 1.20% Castro::normalize_species() 62 0.04648 0.04694 0.04749 1.20% Castro::construct_new_source() 50 0.03667 0.04021 0.0439 1.11% Castro::construct_new_gravity_source() 10 0.02947 0.03213 0.03521 0.89% Amr::writePlotFile() 2 0.03286 0.03341 0.03356 0.85% Castro::post_init() 1 0.0298 0.03 0.03041 0.77% Gravity::interpolate_monopole_grav() 21 0.02714 0.02819 0.02896 0.73% Castro::finalize_do_advance() 10 0.01135 0.01811 0.02623 0.66% FabArray::setDomainBndry() 41 0.01685 0.02132 0.02545 0.64% Castro::apply_source_to_state() 20 0.01828 0.01961 0.02115 0.53% FabArray::Saxpy() 20 0.01821 0.01953 0.02108 0.53% VisMF::Write(FabArray) 2 0.01214 0.01398 0.01903 0.48% Castro::Castro() 1 0.01472 0.01628 0.01766 0.45% Castro::check_for_nan() 20 0.01296 0.01504 0.01686 0.43% MultiFab::contains_nan() 20 0.01293 0.01501 0.01683 0.42% Castro::construct_old_source() 50 0.01474 0.01589 0.01638 0.41% Castro::construct_old_gravity_source() 10 0.01463 0.01578 0.01628 0.41% Castro::post_timestep() 10 0.01542 0.01589 0.01616 0.41% Castro::initMFs() 1 0.008674 0.009512 0.01072 0.27% Castro::computeNewDt() 9 0.01013 0.01015 0.01016 0.26% AmrLevel::AmrLevel(dm) 1 0.007162 0.007497 0.007888 0.20% Other 260 0.02565 0.02992 0.03235 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 29 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 11 MiB 13 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8655 KiB 8663 KiB 8666 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6787 KiB 6791 KiB 6792 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7139 KiB 7140 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4559 KiB 4564 KiB 4572 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 263 KiB 285 KiB 306 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 20 KiB 21 KiB 25 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2816 KiB 2819 KiB 2820 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 203 KiB 215 KiB 231 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 46 KiB 50 KiB 54 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 75 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 62 KiB 66 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.01-16-g92d35c2c8163) finalized