Initializing AMReX (25.01-21-gbd2d730d925b)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.01-21-gbd2d730d925b) initialized Starting run at 06:38:40 UTC on 2025-01-22. Successfully read inputs file ... Castro git describe: 25.01-7-gf7c531104 AMReX git describe: 25.01-21-gbd2d730d9 Microphysics git describe: 25.01-30-ge3b281a9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014634849 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.354659996 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.334125034 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.304634131 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.304278174 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.355435182 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.331393693 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.298679406 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.302970024 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298645904 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.301267768 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008023016 seconds Ending run at 06:38:43 UTC on 2025-01-22. Run time = 3.364281874 Run time without initialization = 3.199681124 Average number of zones advanced per microsecond: 0.819 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3629 ... 3.3636 ... 3.3644 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1416 2.1891 2.2465 66.77% Gravity::make_radial_gravity() 21 0.3063 0.3111 0.3221 9.58% check_for_negative_density() 10 0.0768 0.1344 0.184 5.47% Castro::estTimeStep() 21 0.02458 0.06212 0.1024 3.04% Castro::initData() 1 0.0371 0.07179 0.1015 3.02% amrex::Copy() 193 0.06229 0.07685 0.08548 2.54% FabArray::ParallelCopy_finish() 41 0.03485 0.04861 0.0833 2.48% FabArray::setVal() 143 0.05543 0.06568 0.07108 2.11% Castro::reset_internal_energy(Fab) 1008 0.0412 0.04496 0.04858 1.44% Castro::normalize_species() 62 0.04449 0.04607 0.04786 1.42% FabArray::ParallelCopy_nowait() 41 0.03556 0.04026 0.0422 1.25% FillPatchIterator::Initialize 41 0.02736 0.03211 0.03422 1.02% StateData::FillBoundary(geom) 41 0.03015 0.03189 0.03393 1.01% Gravity::interpolate_monopole_grav() 21 0.02725 0.02808 0.0291 0.86% Castro::construct_new_gravity_source() 10 0.02319 0.02463 0.02708 0.80% Castro::computeTemp() 63 0.01675 0.01802 0.01938 0.58% Castro::initialize_do_advance() 10 0.01181 0.01638 0.01805 0.54% Castro::initialize_advance() 10 0.005411 0.01074 0.01385 0.41% FabArray::Saxpy() 20 0.01046 0.01224 0.01357 0.40% MultiFab::contains_nan() 20 0.01065 0.01164 0.01289 0.38% Amr::writePlotFile() 2 0.007811 0.01054 0.01264 0.38% FabArray::setDomainBndry() 41 0.007564 0.01042 0.01263 0.38% VisMF::Write(FabArray) 2 0.008745 0.009807 0.01236 0.37% Castro::construct_old_gravity_source() 10 0.006943 0.009317 0.009788 0.29% Castro::initMFs() 1 0.006466 0.007031 0.00839 0.25% Castro::construct_new_source() 50 0.00561 0.005914 0.006207 0.18% main() 1 0.003736 0.004427 0.005174 0.15% Gravity::get_new_grav_vector() 11 0.002836 0.003279 0.003707 0.11% Amr::coarseTimeStep() 10 0.001016 0.002327 0.003275 0.10% Gravity::get_old_grav_vector() 10 0.001682 0.002008 0.002312 0.07% Castro::finalize_do_advance() 10 0.0005594 0.001142 0.001669 0.05% AmrLevel::FillPatch() 41 0.0007611 0.00108 0.001156 0.03% Amr::timeStep() 10 0.0001259 0.0001663 0.00033 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002712 0.0002904 0.0003108 0.01% Castro::do_advance_ctu() 10 0.0001388 0.0001637 0.000185 0.01% Castro::clean_state() 62 0.0001356 0.0001513 0.0001643 0.00% FillPatchIterator::FillFromLevel0() 41 9.368e-05 0.0001057 0.0001183 0.00% StateDataPhysBCFunct::() 41 8.657e-05 0.0001013 0.0001111 0.00% Castro::do_old_sources() 10 7.924e-05 9.397e-05 0.0001079 0.00% Castro::Castro() 1 5.68e-05 8.038e-05 0.0001006 0.00% FabArray::ParallelCopy() 41 9.129e-05 9.544e-05 9.952e-05 0.00% Castro::construct_old_source() 50 5.547e-05 7.174e-05 8.176e-05 0.00% Amr::FinalizeInit() 1 4.051e-06 1.585e-05 7.841e-05 0.00% FillPatchSingleLevel 41 6.307e-05 6.731e-05 7.135e-05 0.00% Castro::do_new_sources() 10 4.906e-05 5.95e-05 6.823e-05 0.00% Amr::defBaseLevel() 1 2.787e-05 4.969e-05 6.054e-05 0.00% Castro::subcycle_advance_ctu() 10 3.95e-05 4.944e-05 5.99e-05 0.00% Castro::apply_source_to_state() 20 4.031e-05 4.742e-05 5.216e-05 0.00% Castro::advance() 10 3.791e-05 4.384e-05 4.962e-05 0.00% Castro::construct_old_gravity() 10 3.649e-05 4.102e-05 4.833e-05 0.00% Castro::construct_new_gravity() 10 2.964e-05 3.523e-05 4.52e-05 0.00% Castro::check_for_nan() 20 2.287e-05 2.509e-05 3.013e-05 0.00% Castro::expand_state() 10 2.242e-05 2.529e-05 2.865e-05 0.00% Castro::post_timestep() 10 1.367e-05 1.605e-05 1.858e-05 0.00% Castro::post_init() 1 7.864e-06 9.711e-06 1.22e-05 0.00% Castro::computeNewDt() 9 8.988e-06 1.016e-05 1.141e-05 0.00% Amr::InitializeInit() 1 2.842e-06 4.039e-06 6.993e-06 0.00% Castro::computeInitialDt() 2 3.258e-06 3.827e-06 5.307e-06 0.00% Amr::init() 1 2.024e-06 2.407e-06 3.37e-06 0.00% Amr::initialInit() 1 1.461e-06 1.796e-06 2.214e-06 0.00% Other 261 0.01578 0.01788 0.01974 0.59% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.363 3.364 3.364 100.00% Amr::coarseTimeStep() 10 3.187 3.187 3.187 94.72% Amr::timeStep() 10 3.173 3.174 3.176 94.39% Castro::advance() 10 3.158 3.159 3.159 93.90% Castro::subcycle_advance_ctu() 10 3.082 3.087 3.101 92.16% Castro::do_advance_ctu() 10 3.082 3.087 3.101 92.16% Castro::construct_ctu_hydro_source() 10 2.341 2.345 2.349 69.83% Gravity::make_radial_gravity() 21 0.322 0.3266 0.3346 9.95% Gravity::get_new_grav_vector() 11 0.2156 0.2179 0.2196 6.53% AmrLevel::FillPatch() 41 0.1835 0.1958 0.2111 6.27% Castro::construct_old_gravity() 10 0.1858 0.1903 0.1975 5.87% Gravity::get_old_grav_vector() 10 0.1851 0.1897 0.1968 5.85% Castro::construct_new_gravity() 10 0.1938 0.1956 0.1968 5.85% FillPatchIterator::Initialize 41 0.1513 0.1637 0.1866 5.55% check_for_negative_density() 10 0.0768 0.1344 0.184 5.47% Castro::initialize_do_advance() 10 0.159 0.1633 0.1698 5.05% Amr::init() 1 0.1641 0.1642 0.1642 4.88% FillPatchIterator::FillFromLevel0() 41 0.1083 0.1212 0.1517 4.51% FillPatchSingleLevel 41 0.1082 0.1211 0.1516 4.51% Amr::initialInit() 1 0.149 0.1494 0.1495 4.44% Amr::InitializeInit() 1 0.05737 0.09242 0.1232 3.66% Amr::defBaseLevel() 1 0.05736 0.09242 0.1232 3.66% Castro::clean_state() 62 0.1087 0.1146 0.1217 3.62% Castro::expand_state() 10 0.1043 0.1102 0.1216 3.61% FabArray::ParallelCopy() 41 0.07624 0.08906 0.1191 3.54% Castro::initData() 1 0.04077 0.07561 0.1049 3.12% Castro::estTimeStep() 21 0.02458 0.06212 0.1024 3.04% Castro::do_old_sources() 10 0.09009 0.09264 0.09634 2.86% Amr::FinalizeInit() 1 0.02632 0.05695 0.09209 2.74% amrex::Copy() 193 0.06229 0.07685 0.08548 2.54% FabArray::ParallelCopy_finish() 41 0.03485 0.04861 0.0833 2.48% Castro::initialize_advance() 10 0.05411 0.06814 0.07346 2.18% FabArray::setVal() 143 0.05543 0.06568 0.07108 2.11% Castro::do_new_sources() 10 0.05908 0.06338 0.06964 2.07% Castro::computeTemp() 63 0.05833 0.06327 0.06826 2.03% Castro::computeInitialDt() 2 0.002134 0.03288 0.06796 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04148 0.04526 0.04888 1.45% Castro::reset_internal_energy(Fab) 1008 0.0412 0.04496 0.04858 1.44% Castro::normalize_species() 62 0.04449 0.04607 0.04786 1.42% FabArray::ParallelCopy_nowait() 41 0.03567 0.04036 0.04229 1.26% StateDataPhysBCFunct::() 41 0.03026 0.03199 0.03403 1.01% StateData::FillBoundary(geom) 41 0.03015 0.03189 0.03393 1.01% Castro::construct_new_source() 50 0.02901 0.03054 0.033 0.98% Gravity::interpolate_monopole_grav() 21 0.02725 0.02808 0.0291 0.86% Castro::construct_new_gravity_source() 10 0.02319 0.02463 0.02708 0.80% Castro::finalize_do_advance() 10 0.01517 0.02144 0.02668 0.79% Castro::post_init() 1 0.02314 0.02357 0.02367 0.70% Amr::writePlotFile() 2 0.02282 0.02293 0.02332 0.69% Castro::post_timestep() 10 0.01477 0.01556 0.0163 0.48% Castro::apply_source_to_state() 20 0.0105 0.01229 0.01361 0.40% FabArray::Saxpy() 20 0.01046 0.01224 0.01357 0.40% Castro::check_for_nan() 20 0.01067 0.01166 0.01291 0.38% MultiFab::contains_nan() 20 0.01065 0.01164 0.01289 0.38% FabArray::setDomainBndry() 41 0.007564 0.01042 0.01263 0.38% VisMF::Write(FabArray) 2 0.008745 0.009807 0.01236 0.37% Castro::Castro() 1 0.01005 0.0109 0.01175 0.35% Castro::construct_old_source() 50 0.006999 0.009389 0.009867 0.29% Castro::construct_old_gravity_source() 10 0.006943 0.009317 0.009788 0.29% Castro::computeNewDt() 9 0.008956 0.008961 0.008967 0.27% Castro::initMFs() 1 0.006466 0.007031 0.00839 0.25% Other 261 0.02571 0.02855 0.03135 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 32 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8669 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6779 KiB 6785 KiB 6790 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4577 KiB 4584 KiB 4606 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 206 KiB 219 KiB 240 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2813 KiB 2816 KiB 2816 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 244 KiB 247 KiB 253 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 40 KiB 56 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 82 KiB 83 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 72 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.01-21-gbd2d730d925b) finalized