Initializing AMReX (25.01-25-g0f46a1615c17)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.01-25-g0f46a1615c17) initialized Starting run at 06:25:37 UTC on 2025-01-23. Successfully read inputs file ... Castro git describe: 25.01-8-g534d7b288 AMReX git describe: 25.01-25-g0f46a1615 Microphysics git describe: 25.01-30-ge3b281a9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.020325007 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.39965543 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.372287352 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.362024723 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.383156245 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.362938926 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.361576706 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.361473073 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.362388031 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.359304384 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.365834406 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.011911956 seconds Ending run at 06:25:41 UTC on 2025-01-23. Run time = 3.895701176 Run time without initialization = 3.710926362 Average number of zones advanced per microsecond: 0.706 Average number of zones advanced per microsecond per rank: 0.088 TinyProfiler total time across processes [min...avg...max]: 3.8947 ... 3.8954 ... 3.8958 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2540 2.4470 2.6424 67.83% check_for_negative_density() 10 0.00595 0.2043 0.4055 10.41% Gravity::make_radial_gravity() 21 0.2866 0.3002 0.3217 8.26% amrex::Copy() 193 0.09603 0.1142 0.1241 3.19% FabArray::setVal() 143 0.09561 0.1044 0.109 2.80% Castro::initData() 1 0.03981 0.07166 0.1019 2.62% Castro::estTimeStep() 21 0.02459 0.05806 0.08614 2.21% FabArray::ParallelCopy_finish() 41 0.05278 0.0571 0.06861 1.76% FabArray::ParallelCopy_nowait() 41 0.05821 0.06364 0.06851 1.76% FillPatchIterator::Initialize 41 0.04685 0.0549 0.0614 1.58% Castro::normalize_species() 62 0.04535 0.0492 0.05192 1.33% Castro::reset_internal_energy(Fab) 1008 0.04881 0.05022 0.0512 1.31% StateData::FillBoundary(geom) 41 0.03499 0.03864 0.04361 1.12% Castro::construct_new_gravity_source() 10 0.02983 0.03143 0.03288 0.84% Gravity::interpolate_monopole_grav() 21 0.02701 0.02751 0.02833 0.73% Castro::initialize_do_advance() 10 0.02106 0.02437 0.02821 0.72% FabArray::Saxpy() 20 0.01897 0.02052 0.02187 0.56% Castro::computeTemp() 63 0.01916 0.01989 0.02079 0.53% FabArray::setDomainBndry() 41 0.01676 0.0188 0.02005 0.51% VisMF::Write(FabArray) 2 0.0125 0.01387 0.01742 0.45% Castro::construct_old_gravity_source() 10 0.01608 0.01648 0.01714 0.44% MultiFab::contains_nan() 20 0.01224 0.01446 0.01711 0.44% Castro::initialize_advance() 10 0.01577 0.01637 0.017 0.44% Amr::writePlotFile() 2 0.009799 0.01337 0.01467 0.38% Castro::initMFs() 1 0.008525 0.009412 0.01113 0.29% Castro::construct_new_source() 50 0.007582 0.008682 0.009646 0.25% main() 1 0.006439 0.007173 0.007543 0.19% Gravity::get_new_grav_vector() 11 0.004412 0.005609 0.007012 0.18% Gravity::get_old_grav_vector() 10 0.002577 0.003105 0.003523 0.09% Amr::coarseTimeStep() 10 0.001049 0.002298 0.003418 0.09% AmrLevel::FillPatch() 41 0.001258 0.001442 0.001771 0.05% Castro::finalize_do_advance() 10 0.001334 0.001406 0.001462 0.04% Amr::timeStep() 10 0.0001384 0.0002032 0.0004386 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000321 0.0003394 0.0003569 0.01% Castro::do_advance_ctu() 10 0.0001776 0.0002103 0.0002605 0.01% Castro::clean_state() 62 0.0001772 0.0001999 0.0002197 0.01% Castro::Castro() 1 7.156e-05 0.0001322 0.0001882 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001141 0.0001426 0.000166 0.00% Castro::do_old_sources() 10 8.836e-05 0.0001278 0.0001512 0.00% FabArray::ParallelCopy() 41 0.0001254 0.0001406 0.0001509 0.00% StateDataPhysBCFunct::() 41 0.0001173 0.0001288 0.0001481 0.00% Castro::construct_old_source() 50 8.206e-05 0.0001107 0.0001434 0.00% FillPatchSingleLevel 41 8.365e-05 9.541e-05 0.0001039 0.00% Amr::FinalizeInit() 1 4.495e-06 1.75e-05 0.0001018 0.00% Castro::do_new_sources() 10 5.573e-05 7.869e-05 9.013e-05 0.00% Castro::subcycle_advance_ctu() 10 5.307e-05 7.031e-05 8.115e-05 0.00% Castro::apply_source_to_state() 20 6.253e-05 7.163e-05 7.938e-05 0.00% Castro::advance() 10 5.084e-05 5.946e-05 6.746e-05 0.00% Castro::expand_state() 10 3.185e-05 4.592e-05 6.561e-05 0.00% Castro::construct_old_gravity() 10 3.752e-05 4.787e-05 6.024e-05 0.00% Amr::defBaseLevel() 1 2.857e-05 4.386e-05 5.2e-05 0.00% Castro::construct_new_gravity() 10 3.337e-05 4.099e-05 5.163e-05 0.00% Castro::check_for_nan() 20 2.691e-05 3.159e-05 3.607e-05 0.00% Castro::post_timestep() 10 1.474e-05 2.05e-05 2.626e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.532e-06 1.077e-05 1.312e-05 0.00% Castro::post_init() 1 7.347e-06 9.658e-06 1.292e-05 0.00% Castro::computeNewDt() 9 8.567e-06 1.044e-05 1.228e-05 0.00% Amr::InitializeInit() 1 2.87e-06 3.803e-06 6.171e-06 0.00% Castro::computeInitialDt() 2 3.932e-06 4.655e-06 5.73e-06 0.00% Amr::init() 1 2.533e-06 3.183e-06 5.401e-06 0.00% Amr::initialInit() 1 1.278e-06 2.327e-06 3.811e-06 0.00% Other 260 0.02008 0.02321 0.02541 0.65% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.895 3.895 3.896 100.00% Amr::coarseTimeStep() 10 3.692 3.692 3.692 94.76% Amr::timeStep() 10 3.677 3.678 3.679 94.44% Castro::advance() 10 3.66 3.661 3.662 93.99% Castro::subcycle_advance_ctu() 10 3.551 3.553 3.556 91.28% Castro::do_advance_ctu() 10 3.551 3.553 3.556 91.28% Castro::construct_ctu_hydro_source() 10 2.669 2.675 2.682 68.84% check_for_negative_density() 10 0.00595 0.2043 0.4055 10.41% Gravity::make_radial_gravity() 21 0.3128 0.3244 0.3424 8.79% AmrLevel::FillPatch() 41 0.2587 0.2801 0.299 7.67% FillPatchIterator::Initialize 41 0.2191 0.2337 0.2464 6.32% Castro::initialize_do_advance() 10 0.2075 0.2208 0.2328 5.98% Gravity::get_new_grav_vector() 11 0.2271 0.2285 0.2304 5.91% Castro::construct_old_gravity() 10 0.1911 0.2001 0.2119 5.44% Gravity::get_old_grav_vector() 10 0.1899 0.1991 0.2111 5.42% Castro::construct_new_gravity() 10 0.1988 0.2003 0.2022 5.19% Amr::init() 1 0.1842 0.1844 0.1844 4.73% Castro::expand_state() 10 0.138 0.1534 0.1681 4.31% FillPatchIterator::FillFromLevel0() 41 0.1499 0.16 0.166 4.26% FillPatchSingleLevel 41 0.1498 0.1599 0.1659 4.26% Amr::initialInit() 1 0.1637 0.1638 0.1639 4.21% Castro::do_old_sources() 10 0.1377 0.1405 0.1434 3.68% Amr::InitializeInit() 1 0.06822 0.1003 0.1313 3.37% Amr::defBaseLevel() 1 0.06822 0.1003 0.1313 3.37% Castro::clean_state() 62 0.1218 0.126 0.1284 3.29% FabArray::ParallelCopy() 41 0.1133 0.121 0.1271 3.26% amrex::Copy() 193 0.09603 0.1142 0.1241 3.19% FabArray::setVal() 143 0.09561 0.1044 0.109 2.80% Castro::initData() 1 0.0445 0.07654 0.1073 2.75% Castro::initialize_advance() 10 0.09981 0.1032 0.1049 2.69% Amr::FinalizeInit() 1 0.03253 0.06346 0.09546 2.45% Castro::estTimeStep() 21 0.02459 0.05806 0.08614 2.21% Castro::do_new_sources() 10 0.07637 0.0802 0.08317 2.13% Castro::computeTemp() 63 0.06906 0.07045 0.07211 1.85% FabArray::ParallelCopy_nowait() 41 0.05833 0.06376 0.06866 1.76% FabArray::ParallelCopy_finish() 41 0.05278 0.0571 0.06861 1.76% Castro::computeInitialDt() 2 0.002534 0.03346 0.06538 1.68% Castro::normalize_species() 62 0.04535 0.0492 0.05192 1.33% Castro::reset_internal_energy(MultiFab) 63 0.04915 0.05056 0.05153 1.32% Castro::reset_internal_energy(Fab) 1008 0.04881 0.05022 0.0512 1.31% StateDataPhysBCFunct::() 41 0.03511 0.03877 0.04375 1.12% StateData::FillBoundary(geom) 41 0.03499 0.03864 0.04361 1.12% Castro::construct_new_source() 50 0.0378 0.04011 0.04246 1.09% Castro::construct_new_gravity_source() 10 0.02983 0.03143 0.03288 0.84% Amr::writePlotFile() 2 0.03251 0.03261 0.03268 0.84% Castro::post_init() 1 0.02928 0.02941 0.0296 0.76% Gravity::interpolate_monopole_grav() 21 0.02701 0.02751 0.02833 0.73% Castro::apply_source_to_state() 20 0.01904 0.02059 0.02194 0.56% FabArray::Saxpy() 20 0.01897 0.02052 0.02187 0.56% Castro::finalize_do_advance() 10 0.01198 0.01582 0.02119 0.54% FabArray::setDomainBndry() 41 0.01676 0.0188 0.02005 0.51% Castro::Castro() 1 0.01489 0.01626 0.01764 0.45% VisMF::Write(FabArray) 2 0.0125 0.01387 0.01742 0.45% Castro::construct_old_source() 50 0.01616 0.0166 0.01726 0.44% Castro::post_timestep() 10 0.01602 0.01664 0.01718 0.44% Castro::check_for_nan() 20 0.01227 0.01449 0.01715 0.44% Castro::construct_old_gravity_source() 10 0.01608 0.01648 0.01714 0.44% MultiFab::contains_nan() 20 0.01224 0.01446 0.01711 0.44% Castro::initMFs() 1 0.008525 0.009412 0.01113 0.29% Castro::computeNewDt() 9 0.01019 0.01021 0.01022 0.26% AmrLevel::AmrLevel(dm) 1 0.006918 0.007267 0.007819 0.20% Other 260 0.02597 0.03012 0.03312 0.85% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 29 B 33 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8656 KiB 8664 KiB 8667 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6786 KiB 6791 KiB 6792 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7139 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4554 KiB 4556 KiB 4559 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 247 KiB 270 KiB 291 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 21 KiB 22 KiB 25 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2816 KiB 2819 KiB 2819 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 204 KiB 212 KiB 224 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 43 KiB 47 KiB 49 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 74 KiB 75 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 62 KiB 65 KiB 69 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.01-25-g0f46a1615c17) finalized