Initializing AMReX (25.01-25-g0f46a1615c17)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.01-25-g0f46a1615c17) initialized Starting run at 06:19:53 UTC on 2025-01-24. Successfully read inputs file ... Castro git describe: 25.01-8-g534d7b288 AMReX git describe: 25.01-25-g0f46a1615 Microphysics git describe: 25.01-30-ge3b281a9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01629853 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.352554895 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.3400348 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.325655821 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.305666867 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.352033787 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.300766956 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.294554254 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.295172305 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.306889495 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.296459036 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.040747854 seconds Ending run at 06:19:56 UTC on 2025-01-24. Run time = 3.411299778 Run time without initialization = 3.21651224 Average number of zones advanced per microsecond: 0.815 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.4104 ... 3.4109 ... 3.4113 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1136 2.1757 2.2575 66.18% Gravity::make_radial_gravity() 21 0.3009 0.3083 0.3191 9.36% check_for_negative_density() 10 0.03856 0.1202 0.1892 5.54% Castro::initData() 1 0.03709 0.07762 0.1221 3.58% Castro::estTimeStep() 21 0.03642 0.07908 0.1183 3.47% amrex::Copy() 193 0.06573 0.07568 0.08008 2.35% FabArray::setVal() 143 0.06314 0.07046 0.07865 2.31% FabArray::ParallelCopy_finish() 41 0.0421 0.05958 0.07508 2.20% Castro::reset_internal_energy(Fab) 1008 0.04549 0.04681 0.05036 1.48% Castro::normalize_species() 62 0.04556 0.04675 0.04805 1.41% Amr::writePlotFile() 2 0.04092 0.04363 0.04422 1.30% FabArray::ParallelCopy_nowait() 41 0.03422 0.03886 0.04063 1.19% StateData::FillBoundary(geom) 41 0.02893 0.03324 0.03853 1.13% FillPatchIterator::Initialize 41 0.02878 0.03331 0.03825 1.12% Gravity::interpolate_monopole_grav() 21 0.02754 0.02789 0.02832 0.83% Castro::construct_new_gravity_source() 10 0.0216 0.023 0.0278 0.81% Castro::computeTemp() 63 0.01807 0.01849 0.01928 0.57% Castro::initialize_do_advance() 10 0.01425 0.01562 0.01707 0.50% VisMF::Write(FabArray) 2 0.01032 0.01088 0.01356 0.40% Castro::construct_old_gravity_source() 10 0.007862 0.009775 0.01347 0.39% FabArray::Saxpy() 20 0.01117 0.01195 0.01296 0.38% Castro::initialize_advance() 10 0.01064 0.01125 0.01209 0.35% MultiFab::contains_nan() 20 0.01047 0.01118 0.01179 0.35% Castro::initMFs() 1 0.007806 0.009339 0.01129 0.33% FabArray::setDomainBndry() 41 0.007755 0.009617 0.01086 0.32% Castro::construct_new_source() 50 0.005376 0.00574 0.006013 0.18% main() 1 0.00446 0.004958 0.005383 0.16% Gravity::get_new_grav_vector() 11 0.003106 0.003508 0.003833 0.11% Amr::coarseTimeStep() 10 0.0008756 0.002626 0.003455 0.10% Gravity::get_old_grav_vector() 10 0.001651 0.002002 0.002457 0.07% AmrLevel::FillPatch() 41 0.0007164 0.00103 0.001251 0.04% Castro::finalize_do_advance() 10 0.0004941 0.000937 0.001072 0.03% Amr::timeStep() 10 0.0001173 0.000214 0.0005634 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0002812 0.0002942 0.0003255 0.01% Castro::clean_state() 62 0.0001299 0.0001497 0.0001749 0.01% Castro::do_advance_ctu() 10 0.000143 0.0001558 0.000173 0.01% Castro::do_old_sources() 10 7.388e-05 9.261e-05 0.0001339 0.00% StateDataPhysBCFunct::() 41 8.753e-05 0.0001023 0.0001271 0.00% Castro::construct_old_source() 50 5.519e-05 6.937e-05 0.0001179 0.00% FillPatchIterator::FillFromLevel0() 41 8.474e-05 0.0001008 0.00011 0.00% FabArray::ParallelCopy() 41 8.694e-05 9.366e-05 0.0001064 0.00% Amr::FinalizeInit() 1 3.622e-06 1.502e-05 8.926e-05 0.00% FillPatchSingleLevel 41 6.119e-05 6.911e-05 7.678e-05 0.00% Castro::Castro() 1 5.077e-05 6.071e-05 6.844e-05 0.00% Castro::subcycle_advance_ctu() 10 4.021e-05 4.774e-05 6.189e-05 0.00% Castro::do_new_sources() 10 4.728e-05 5.712e-05 6.181e-05 0.00% Castro::advance() 10 3.485e-05 4.64e-05 5.837e-05 0.00% Castro::apply_source_to_state() 20 3.793e-05 4.424e-05 5.417e-05 0.00% Amr::defBaseLevel() 1 3.223e-05 3.654e-05 4.964e-05 0.00% Castro::construct_old_gravity() 10 3.229e-05 3.765e-05 4.31e-05 0.00% Castro::construct_new_gravity() 10 2.933e-05 3.343e-05 3.757e-05 0.00% Castro::expand_state() 10 2.257e-05 2.678e-05 3.274e-05 0.00% Castro::check_for_nan() 20 2.312e-05 2.555e-05 2.766e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.206e-06 1.051e-05 1.881e-05 0.00% Castro::post_timestep() 10 1.439e-05 1.568e-05 1.739e-05 0.00% Castro::computeNewDt() 9 9.809e-06 1.06e-05 1.14e-05 0.00% Castro::post_init() 1 7.923e-06 8.595e-06 1.026e-05 0.00% Amr::InitializeInit() 1 2.755e-06 3.889e-06 8.294e-06 0.00% Amr::initialInit() 1 1.377e-06 2.533e-06 7.787e-06 0.00% Castro::computeInitialDt() 2 3.224e-06 3.941e-06 4.688e-06 0.00% Amr::init() 1 2.089e-06 2.448e-06 2.89e-06 0.00% Other 260 0.01711 0.02003 0.02228 0.65% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.41 3.411 3.411 100.00% Amr::coarseTimeStep() 10 3.17 3.17 3.17 92.94% Amr::timeStep() 10 3.156 3.157 3.159 92.61% Castro::advance() 10 3.14 3.141 3.141 92.09% Castro::subcycle_advance_ctu() 10 3.06 3.062 3.067 89.91% Castro::do_advance_ctu() 10 3.06 3.062 3.067 89.91% Castro::construct_ctu_hydro_source() 10 2.312 2.317 2.324 68.14% Gravity::make_radial_gravity() 21 0.3167 0.3235 0.333 9.76% Gravity::get_new_grav_vector() 11 0.2152 0.2161 0.2167 6.35% AmrLevel::FillPatch() 41 0.1962 0.2067 0.2163 6.34% Castro::construct_old_gravity() 10 0.1843 0.1895 0.1974 5.79% Gravity::get_old_grav_vector() 10 0.1837 0.1888 0.1968 5.77% Amr::init() 1 0.1939 0.1943 0.1944 5.70% Castro::construct_new_gravity() 10 0.1898 0.1905 0.1912 5.60% check_for_negative_density() 10 0.03856 0.1202 0.1892 5.54% FillPatchIterator::Initialize 41 0.1628 0.1751 0.1845 5.41% Amr::initialInit() 1 0.1775 0.1779 0.1781 5.22% Castro::initialize_do_advance() 10 0.154 0.1618 0.166 4.87% Amr::InitializeInit() 1 0.0598 0.1025 0.1482 4.34% Amr::defBaseLevel() 1 0.05979 0.1025 0.1482 4.34% FillPatchIterator::FillFromLevel0() 41 0.1143 0.1321 0.1394 4.09% FillPatchSingleLevel 41 0.1141 0.132 0.1393 4.08% Castro::initData() 1 0.04081 0.0816 0.1264 3.71% Castro::clean_state() 62 0.1155 0.1176 0.1222 3.58% Castro::estTimeStep() 21 0.03642 0.07908 0.1183 3.47% Amr::FinalizeInit() 1 0.02994 0.07539 0.1181 3.46% Castro::expand_state() 10 0.104 0.1093 0.1135 3.33% Castro::do_old_sources() 10 0.1011 0.1053 0.1104 3.24% FabArray::ParallelCopy() 41 0.08243 0.09862 0.1095 3.21% Castro::computeInitialDt() 2 0.002572 0.0482 0.09096 2.67% amrex::Copy() 193 0.06573 0.07568 0.08008 2.35% FabArray::setVal() 143 0.06314 0.07046 0.07865 2.31% Castro::initialize_advance() 10 0.07003 0.07498 0.07729 2.27% FabArray::ParallelCopy_finish() 41 0.0421 0.05958 0.07508 2.20% Castro::computeTemp() 63 0.06385 0.0656 0.06996 2.05% Castro::do_new_sources() 10 0.05594 0.0606 0.06675 1.96% Amr::writePlotFile() 2 0.05712 0.05731 0.05752 1.69% Castro::reset_internal_energy(MultiFab) 63 0.04578 0.04711 0.05068 1.49% Castro::reset_internal_energy(Fab) 1008 0.04549 0.04681 0.05036 1.48% Castro::normalize_species() 62 0.04556 0.04675 0.04805 1.41% FabArray::ParallelCopy_nowait() 41 0.03432 0.03894 0.04071 1.19% StateDataPhysBCFunct::() 41 0.02902 0.03334 0.03863 1.13% StateData::FillBoundary(geom) 41 0.02893 0.03324 0.03853 1.13% Castro::construct_new_source() 50 0.02704 0.02874 0.03381 0.99% Gravity::interpolate_monopole_grav() 21 0.02754 0.02789 0.02832 0.83% Castro::construct_new_gravity_source() 10 0.0216 0.023 0.0278 0.81% Castro::finalize_do_advance() 10 0.01578 0.02259 0.02751 0.81% Castro::post_init() 1 0.02665 0.0268 0.027 0.79% Castro::post_timestep() 10 0.01566 0.01629 0.01745 0.51% Castro::Castro() 1 0.01137 0.01309 0.01471 0.43% Castro::construct_old_source() 50 0.007921 0.009844 0.01358 0.40% VisMF::Write(FabArray) 2 0.01032 0.01088 0.01356 0.40% Castro::construct_old_gravity_source() 10 0.007862 0.009775 0.01347 0.39% Castro::apply_source_to_state() 20 0.01121 0.012 0.01301 0.38% FabArray::Saxpy() 20 0.01117 0.01195 0.01296 0.38% Castro::check_for_nan() 20 0.01049 0.0112 0.01181 0.35% MultiFab::contains_nan() 20 0.01047 0.01118 0.01179 0.35% Castro::initMFs() 1 0.007806 0.009339 0.01129 0.33% FabArray::setDomainBndry() 41 0.007755 0.009617 0.01086 0.32% Castro::computeNewDt() 9 0.009219 0.009241 0.009256 0.27% AmrLevel::AmrLevel(dm) 1 0.006579 0.007245 0.007914 0.23% Other 260 0.02185 0.02591 0.02906 0.85% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 38 B 70 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8650 KiB 8663 KiB 8668 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6721 KiB 6727 KiB 6730 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4482 KiB 4485 KiB 4487 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 217 KiB 225 KiB 236 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 18 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2758 KiB 2761 KiB 2762 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 236 KiB 241 KiB 248 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 43 KiB 47 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 81 KiB 81 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.01-25-g0f46a1615c17) finalized