Initializing AMReX (25.01-26-g4b34f9c89476)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.01-26-g4b34f9c89476) initialized Starting run at 06:39:58 UTC on 2025-01-27. Successfully read inputs file ... Castro git describe: 25.01-8-g534d7b288 AMReX git describe: 25.01-26-g4b34f9c89 Microphysics git describe: 25.01-30-ge3b281a9 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014967207 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.345861373 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.34968022 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.35252036 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.417177384 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.37638251 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.290852139 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.293185403 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.330723792 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.315391166 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.321652762 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008808893 seconds Ending run at 06:40:01 UTC on 2025-01-27. Run time = 3.577992028 Run time without initialization = 3.408041247 Average number of zones advanced per microsecond: 0.769 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.5763 ... 3.5775 ... 3.5781 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1787 2.2218 2.2781 63.67% Gravity::make_radial_gravity() 21 0.3413 0.3467 0.3542 9.90% check_for_negative_density() 10 0.1197 0.1761 0.2202 6.15% Castro::estTimeStep() 21 0.04351 0.08353 0.1237 3.46% Castro::initData() 1 0.037 0.07125 0.1063 2.97% amrex::Copy() 193 0.08249 0.08772 0.09267 2.59% FabArray::setVal() 143 0.06125 0.07407 0.08979 2.51% FabArray::ParallelCopy_finish() 41 0.05997 0.07514 0.08701 2.43% Castro::normalize_species() 62 0.04597 0.04857 0.05514 1.54% Castro::reset_internal_energy(Fab) 1008 0.04431 0.0472 0.0488 1.36% FabArray::ParallelCopy_nowait() 41 0.04145 0.04409 0.04646 1.30% FillPatchIterator::Initialize 41 0.03655 0.03789 0.04075 1.14% StateData::FillBoundary(geom) 41 0.03335 0.03505 0.0382 1.07% Gravity::interpolate_monopole_grav() 21 0.02734 0.02869 0.03037 0.85% Castro::construct_new_gravity_source() 10 0.02432 0.02716 0.03025 0.85% Castro::initialize_do_advance() 10 0.01806 0.02037 0.02314 0.65% Castro::computeTemp() 63 0.01779 0.01876 0.01975 0.55% Castro::initialize_advance() 10 0.009266 0.01189 0.01876 0.52% FabArray::Saxpy() 20 0.01265 0.01354 0.01545 0.43% FabArray::setDomainBndry() 41 0.01156 0.01331 0.01511 0.42% VisMF::Write(FabArray) 2 0.009536 0.01016 0.01313 0.37% MultiFab::contains_nan() 20 0.01114 0.01177 0.01273 0.36% Amr::writePlotFile() 2 0.007844 0.01086 0.01154 0.32% Castro::construct_old_gravity_source() 10 0.00861 0.009292 0.009715 0.27% Castro::initMFs() 1 0.006468 0.00688 0.009501 0.27% Castro::construct_new_source() 50 0.005844 0.006038 0.006607 0.18% Amr::coarseTimeStep() 10 0.001525 0.005443 0.006599 0.18% main() 1 0.003508 0.004722 0.005355 0.15% Gravity::get_new_grav_vector() 11 0.003341 0.003813 0.004046 0.11% Gravity::get_old_grav_vector() 10 0.00192 0.002322 0.00263 0.07% AmrLevel::FillPatch() 41 0.001131 0.001212 0.001287 0.04% Castro::finalize_do_advance() 10 0.001203 0.001248 0.001271 0.04% Amr::timeStep() 10 0.0001413 0.000199 0.0003985 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002976 0.0003144 0.0003673 0.01% StateDataPhysBCFunct::() 41 0.0001255 0.0001633 0.0002135 0.01% Castro::do_advance_ctu() 10 0.000164 0.0001835 0.0002129 0.01% Castro::clean_state() 62 0.0001563 0.000167 0.0001866 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001228 0.0001332 0.0001607 0.00% Castro::do_old_sources() 10 8.377e-05 9.945e-05 0.0001168 0.00% FabArray::ParallelCopy() 41 9.464e-05 0.0001044 0.0001158 0.00% Amr::defBaseLevel() 1 6.982e-05 8.378e-05 9.935e-05 0.00% Castro::construct_old_source() 50 6.542e-05 7.836e-05 9.639e-05 0.00% Castro::Castro() 1 4.113e-05 7.166e-05 8.91e-05 0.00% Amr::FinalizeInit() 1 4.191e-06 1.538e-05 8.722e-05 0.00% FillPatchSingleLevel 41 6.692e-05 7.19e-05 7.651e-05 0.00% Castro::do_new_sources() 10 5.69e-05 6.51e-05 7.191e-05 0.00% Castro::subcycle_advance_ctu() 10 4.737e-05 5.382e-05 6.513e-05 0.00% Castro::construct_old_gravity() 10 3.811e-05 4.488e-05 6.328e-05 0.00% Castro::advance() 10 4.837e-05 5.502e-05 6.093e-05 0.00% Castro::apply_source_to_state() 20 4.276e-05 4.808e-05 5.488e-05 0.00% Castro::construct_new_gravity() 10 3.26e-05 3.933e-05 4.847e-05 0.00% Castro::expand_state() 10 2.2e-05 2.709e-05 3.48e-05 0.00% Castro::check_for_nan() 20 2.508e-05 2.787e-05 3.15e-05 0.00% Castro::post_timestep() 10 1.853e-05 2.109e-05 2.445e-05 0.00% Castro::post_init() 1 1.443e-05 1.812e-05 2.379e-05 0.00% Amr::init() 1 2.032e-06 6.805e-06 1.864e-05 0.00% Castro::computeNewDt() 9 9.686e-06 1.123e-05 1.306e-05 0.00% Amr::InitializeInit() 1 2.321e-06 3.794e-06 7.331e-06 0.00% Castro::computeInitialDt() 2 3.681e-06 3.839e-06 4.093e-06 0.00% Amr::initialInit() 1 1.616e-06 2.111e-06 2.845e-06 0.00% Other 261 0.01601 0.01874 0.02114 0.59% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.576 3.578 3.578 100.00% Amr::coarseTimeStep() 10 3.394 3.394 3.394 94.86% Amr::timeStep() 10 3.375 3.376 3.38 94.46% Castro::advance() 10 3.358 3.359 3.36 93.92% Castro::subcycle_advance_ctu() 10 3.26 3.28 3.29 91.96% Castro::do_advance_ctu() 10 3.26 3.279 3.29 91.96% Castro::construct_ctu_hydro_source() 10 2.418 2.42 2.423 67.71% Gravity::make_radial_gravity() 21 0.3603 0.3661 0.3736 10.44% Gravity::get_new_grav_vector() 11 0.2453 0.2497 0.2591 7.24% AmrLevel::FillPatch() 41 0.2239 0.2431 0.2517 7.03% Castro::construct_new_gravity() 10 0.2217 0.2262 0.2356 6.59% check_for_negative_density() 10 0.1197 0.1761 0.2202 6.15% Castro::construct_old_gravity() 10 0.2078 0.2121 0.2184 6.10% Gravity::get_old_grav_vector() 10 0.2063 0.211 0.2177 6.08% FillPatchIterator::Initialize 41 0.1857 0.2061 0.2152 6.01% Castro::initialize_do_advance() 10 0.1851 0.2004 0.208 5.81% Amr::init() 1 0.1691 0.1696 0.1697 4.74% FillPatchIterator::FillFromLevel0() 41 0.1362 0.1548 0.1648 4.61% FillPatchSingleLevel 41 0.136 0.1547 0.1647 4.60% Amr::initialInit() 1 0.154 0.1544 0.1545 4.32% Castro::expand_state() 10 0.1234 0.1414 0.1519 4.24% FabArray::ParallelCopy() 41 0.1016 0.1194 0.1308 3.66% Castro::clean_state() 62 0.1167 0.1204 0.1301 3.63% Amr::InitializeInit() 1 0.05769 0.09243 0.1273 3.56% Amr::defBaseLevel() 1 0.05769 0.09242 0.1273 3.56% Castro::estTimeStep() 21 0.04351 0.08353 0.1237 3.46% Castro::initData() 1 0.04075 0.0751 0.1099 3.07% Castro::do_old_sources() 10 0.09455 0.0968 0.09941 2.78% Amr::FinalizeInit() 1 0.02711 0.062 0.0968 2.71% Castro::initialize_advance() 10 0.06466 0.07546 0.09533 2.66% amrex::Copy() 193 0.08249 0.08772 0.09267 2.59% FabArray::setVal() 143 0.06125 0.07407 0.08979 2.51% FabArray::ParallelCopy_finish() 41 0.05997 0.07514 0.08701 2.43% Castro::do_new_sources() 10 0.06262 0.07154 0.0853 2.38% Castro::computeInitialDt() 2 0.002162 0.03699 0.07179 2.01% Castro::computeTemp() 63 0.06242 0.06628 0.06891 1.93% Castro::normalize_species() 62 0.04597 0.04857 0.05514 1.54% Castro::finalize_do_advance() 10 0.01986 0.03626 0.04934 1.38% Castro::reset_internal_energy(MultiFab) 63 0.04462 0.04751 0.04916 1.37% Castro::reset_internal_energy(Fab) 1008 0.04431 0.0472 0.0488 1.36% FabArray::ParallelCopy_nowait() 41 0.04153 0.04418 0.04656 1.30% StateDataPhysBCFunct::() 41 0.03347 0.03522 0.03842 1.07% StateData::FillBoundary(geom) 41 0.03335 0.03505 0.0382 1.07% Castro::construct_new_source() 50 0.03019 0.0332 0.03686 1.03% Gravity::interpolate_monopole_grav() 21 0.02734 0.02869 0.03037 0.85% Castro::construct_new_gravity_source() 10 0.02432 0.02716 0.03025 0.85% Castro::post_init() 1 0.02435 0.02445 0.02454 0.69% Amr::writePlotFile() 2 0.024 0.02407 0.02414 0.67% Castro::post_timestep() 10 0.01593 0.0167 0.01927 0.54% Castro::apply_source_to_state() 20 0.0127 0.01358 0.0155 0.43% FabArray::Saxpy() 20 0.01265 0.01354 0.01545 0.43% FabArray::setDomainBndry() 41 0.01156 0.01331 0.01511 0.42% VisMF::Write(FabArray) 2 0.009536 0.01016 0.01313 0.37% Castro::check_for_nan() 20 0.01117 0.0118 0.01276 0.36% MultiFab::contains_nan() 20 0.01114 0.01177 0.01273 0.36% Castro::Castro() 1 0.01081 0.01113 0.01261 0.35% Castro::computeNewDt() 9 0.0115 0.01154 0.01157 0.32% Castro::construct_old_source() 50 0.008676 0.009371 0.009801 0.27% Castro::construct_old_gravity_source() 10 0.00861 0.009292 0.009715 0.27% Castro::initMFs() 1 0.006468 0.00688 0.009501 0.27% Other 261 0.02618 0.03045 0.0352 0.98% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 36 B 70 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8656 KiB 8671 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6789 KiB 6795 KiB 6797 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4552 KiB 4579 KiB 4591 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 231 KiB 258 KiB 272 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2812 KiB 2815 KiB 2817 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 256 KiB 260 KiB 266 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 41 KiB 52 KiB 60 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 87 KiB 89 KiB 93 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 74 KiB 75 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.01-26-g4b34f9c89476) finalized