Initializing AMReX (25.01-26-g4b34f9c89476)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.01-26-g4b34f9c89476) initialized Starting run at 06:19:30 UTC on 2025-01-28. Successfully read inputs file ... Castro git describe: 25.01-9-g9fdc8cb81 AMReX git describe: 25.01-26-g4b34f9c89 Microphysics git describe: 25.01-34-gffe16830 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014961511 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.357451801 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.387196861 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.33721931 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.389400937 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.358279665 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.36175541 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.322871302 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.321303406 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.320833306 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.345841681 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012078957 seconds Ending run at 06:19:33 UTC on 2025-01-28. Run time = 3.688450176 Run time without initialization = 3.519517855 Average number of zones advanced per microsecond: 0.745 Average number of zones advanced per microsecond per rank: 0.093 TinyProfiler total time across processes [min...avg...max]: 3.6877 ... 3.6882 ... 3.6885 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0838 2.2277 2.3516 63.75% check_for_negative_density() 10 0.1245 0.2489 0.3941 10.69% Gravity::make_radial_gravity() 21 0.3494 0.3587 0.3698 10.03% Castro::estTimeStep() 21 0.05088 0.09052 0.1325 3.59% Castro::initData() 1 0.03766 0.07217 0.1043 2.83% amrex::Copy() 193 0.07774 0.08804 0.09826 2.66% FabArray::ParallelCopy_finish() 41 0.05735 0.07097 0.0868 2.35% FabArray::setVal() 143 0.0687 0.07484 0.08337 2.26% Castro::normalize_species() 62 0.04667 0.05184 0.05893 1.60% Castro::reset_internal_energy(Fab) 1008 0.04483 0.05008 0.05372 1.46% FabArray::ParallelCopy_nowait() 41 0.03918 0.04643 0.04986 1.35% FillPatchIterator::Initialize 41 0.03103 0.0384 0.04036 1.09% StateData::FillBoundary(geom) 41 0.03414 0.03655 0.04021 1.09% Gravity::interpolate_monopole_grav() 21 0.02712 0.02908 0.03292 0.89% Castro::construct_new_gravity_source() 10 0.02462 0.02708 0.02966 0.80% Castro::initialize_do_advance() 10 0.01971 0.02152 0.02319 0.63% Castro::computeTemp() 63 0.01824 0.02002 0.02142 0.58% VisMF::Write(FabArray) 2 0.009407 0.01051 0.01603 0.43% FabArray::setDomainBndry() 41 0.01083 0.01305 0.01559 0.42% Amr::writePlotFile() 2 0.007799 0.0134 0.01531 0.42% MultiFab::contains_nan() 20 0.011 0.01244 0.01518 0.41% FabArray::Saxpy() 20 0.01102 0.01289 0.01386 0.38% Castro::initialize_advance() 10 0.01019 0.01119 0.01364 0.37% Castro::construct_old_gravity_source() 10 0.007631 0.009413 0.01037 0.28% Amr::coarseTimeStep() 10 0.003297 0.005411 0.007595 0.21% Castro::initMFs() 1 0.006478 0.006659 0.007416 0.20% Castro::construct_new_source() 50 0.005771 0.006196 0.006975 0.19% Gravity::get_new_grav_vector() 11 0.003495 0.004077 0.005275 0.14% main() 1 0.00395 0.004439 0.004808 0.13% Gravity::get_old_grav_vector() 10 0.002068 0.002384 0.002799 0.08% Castro::finalize_do_advance() 10 0.001188 0.001209 0.00123 0.03% AmrLevel::FillPatch() 41 0.0008784 0.001031 0.00116 0.03% Amr::timeStep() 10 0.0001603 0.0002339 0.000469 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000296 0.0003247 0.0003588 0.01% Castro::do_advance_ctu() 10 0.0001736 0.0002049 0.0002434 0.01% Castro::clean_state() 62 0.0001635 0.0001849 0.0002166 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001199 0.0001399 0.0001621 0.00% StateDataPhysBCFunct::() 41 0.0001299 0.0001421 0.0001499 0.00% Castro::do_old_sources() 10 9.356e-05 0.0001118 0.0001481 0.00% Castro::Castro() 1 6.257e-05 9.226e-05 0.0001253 0.00% FabArray::ParallelCopy() 41 9.904e-05 0.0001129 0.0001229 0.00% Castro::do_new_sources() 10 6.669e-05 7.561e-05 0.0001015 0.00% FillPatchSingleLevel 41 6.955e-05 8.106e-05 9.875e-05 0.00% Castro::construct_old_source() 50 6.552e-05 8.013e-05 9.295e-05 0.00% Amr::FinalizeInit() 1 4.226e-06 1.537e-05 8.835e-05 0.00% Castro::apply_source_to_state() 20 4.169e-05 5.767e-05 8.761e-05 0.00% Castro::subcycle_advance_ctu() 10 5.209e-05 6.047e-05 7.61e-05 0.00% Castro::advance() 10 5.161e-05 5.696e-05 7.252e-05 0.00% Amr::defBaseLevel() 1 4.297e-05 5.147e-05 6.011e-05 0.00% Castro::construct_new_gravity() 10 3.591e-05 4.466e-05 5.654e-05 0.00% Castro::construct_old_gravity() 10 4.032e-05 4.521e-05 4.971e-05 0.00% Castro::expand_state() 10 2.525e-05 3.05e-05 3.787e-05 0.00% Castro::check_for_nan() 20 2.654e-05 2.925e-05 3.21e-05 0.00% Castro::post_timestep() 10 1.607e-05 2.064e-05 2.773e-05 0.00% Castro::post_init() 1 1.277e-05 1.64e-05 2.181e-05 0.00% Castro::computeNewDt() 9 9.41e-06 1.247e-05 1.796e-05 0.00% Amr::InitializeInit() 1 2.51e-06 3.153e-06 5.198e-06 0.00% Castro::computeInitialDt() 2 3.476e-06 3.722e-06 4.05e-06 0.00% Amr::init() 1 1.913e-06 2.577e-06 3.716e-06 0.00% Amr::initialInit() 1 1.736e-06 2.113e-06 2.606e-06 0.00% Other 261 0.01675 0.01873 0.01999 0.54% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.688 3.688 3.689 100.00% Amr::coarseTimeStep() 10 3.503 3.503 3.503 94.96% Amr::timeStep() 10 3.483 3.485 3.487 94.55% Castro::advance() 10 3.467 3.467 3.468 94.02% Castro::subcycle_advance_ctu() 10 3.375 3.388 3.394 92.02% Castro::do_advance_ctu() 10 3.375 3.388 3.394 92.02% Castro::construct_ctu_hydro_source() 10 2.497 2.501 2.507 67.97% check_for_negative_density() 10 0.1245 0.2489 0.3941 10.69% Gravity::make_radial_gravity() 21 0.3687 0.3771 0.3846 10.43% Gravity::get_new_grav_vector() 11 0.2538 0.2576 0.2608 7.07% AmrLevel::FillPatch() 41 0.2245 0.2426 0.2541 6.89% Castro::construct_new_gravity() 10 0.2309 0.2342 0.2366 6.41% Castro::construct_old_gravity() 10 0.2104 0.2172 0.2264 6.14% Gravity::get_old_grav_vector() 10 0.2096 0.2163 0.2258 6.12% FillPatchIterator::Initialize 41 0.1891 0.206 0.215 5.83% Castro::initialize_do_advance() 10 0.1906 0.1998 0.2082 5.65% Amr::init() 1 0.1685 0.1686 0.1686 4.57% FillPatchIterator::FillFromLevel0() 41 0.1393 0.1545 0.1622 4.40% FillPatchSingleLevel 41 0.1392 0.1544 0.1621 4.39% Amr::initialInit() 1 0.1532 0.1533 0.1534 4.16% Castro::expand_state() 10 0.1252 0.1381 0.1458 3.95% Castro::clean_state() 62 0.119 0.1282 0.1409 3.82% Castro::estTimeStep() 21 0.05088 0.09052 0.1325 3.59% FabArray::ParallelCopy() 41 0.102 0.1176 0.1262 3.42% Amr::InitializeInit() 1 0.05843 0.09332 0.1259 3.41% Amr::defBaseLevel() 1 0.05843 0.09332 0.1259 3.41% Castro::initData() 1 0.04173 0.07624 0.1079 2.93% Castro::do_old_sources() 10 0.09798 0.1013 0.1048 2.84% amrex::Copy() 193 0.07774 0.08804 0.09826 2.66% Amr::FinalizeInit() 1 0.02758 0.05993 0.09475 2.57% Castro::initialize_advance() 10 0.06897 0.07509 0.08856 2.40% FabArray::ParallelCopy_finish() 41 0.05735 0.07097 0.0868 2.35% FabArray::setVal() 143 0.0687 0.07484 0.08337 2.26% Castro::do_new_sources() 10 0.06396 0.07205 0.08236 2.23% Castro::computeTemp() 63 0.06337 0.07043 0.0755 2.05% Castro::computeInitialDt() 2 0.002218 0.03474 0.06966 1.89% Castro::normalize_species() 62 0.04667 0.05184 0.05893 1.60% Castro::finalize_do_advance() 10 0.03656 0.04623 0.05521 1.50% Castro::reset_internal_energy(MultiFab) 63 0.04513 0.0504 0.05408 1.47% Castro::reset_internal_energy(Fab) 1008 0.04483 0.05008 0.05372 1.46% FabArray::ParallelCopy_nowait() 41 0.03928 0.04654 0.04996 1.35% StateDataPhysBCFunct::() 41 0.03427 0.03669 0.04035 1.09% StateData::FillBoundary(geom) 41 0.03414 0.03655 0.04021 1.09% Castro::construct_new_source() 50 0.0308 0.03328 0.03652 0.99% Gravity::interpolate_monopole_grav() 21 0.02712 0.02908 0.03292 0.89% Castro::construct_new_gravity_source() 10 0.02462 0.02708 0.02966 0.80% Amr::writePlotFile() 2 0.02729 0.02751 0.02764 0.75% Castro::post_init() 1 0.02434 0.0246 0.02491 0.68% Castro::post_timestep() 10 0.01601 0.01789 0.01969 0.53% VisMF::Write(FabArray) 2 0.009407 0.01051 0.01603 0.43% FabArray::setDomainBndry() 41 0.01083 0.01305 0.01559 0.42% Castro::check_for_nan() 20 0.01103 0.01247 0.01521 0.41% MultiFab::contains_nan() 20 0.011 0.01244 0.01518 0.41% Castro::apply_source_to_state() 20 0.01107 0.01295 0.01391 0.38% FabArray::Saxpy() 20 0.01102 0.01289 0.01386 0.38% Castro::Castro() 1 0.01105 0.01134 0.01208 0.33% Castro::computeNewDt() 9 0.01075 0.01077 0.01079 0.29% Castro::construct_old_source() 50 0.007697 0.009493 0.01046 0.28% Castro::construct_old_gravity_source() 10 0.007631 0.009413 0.01037 0.28% Castro::initMFs() 1 0.006478 0.006659 0.007416 0.20% Other 261 0.0273 0.03006 0.03229 0.88% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 32 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8667 KiB 8675 KiB 8677 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6803 KiB 6809 KiB 6810 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7135 KiB 7142 KiB 7144 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4572 KiB 4589 KiB 4596 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 228 KiB 248 KiB 260 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 17 KiB 23 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2816 KiB 2819 KiB 2820 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 255 KiB 260 KiB 266 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 42 KiB 49 KiB 52 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2031 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 88 KiB 89 KiB 90 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 73 KiB 75 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.01-26-g4b34f9c89476) finalized