Initializing AMReX (25.01-29-g69f1ac884c6a)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.01-29-g69f1ac884c6a) initialized Starting run at 06:21:30 UTC on 2025-01-29. Successfully read inputs file ... Castro git describe: 25.01-9-g9fdc8cb81 AMReX git describe: 25.01-29-g69f1ac884 Microphysics git describe: 25.01-38-g5b2c0b29 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016164099 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.341087524 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.327475811 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.328667709 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.334990152 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.421229343 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.363822568 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.311197451 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.302356541 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.302921825 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.360748019 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009901046 seconds Ending run at 06:21:33 UTC on 2025-01-29. Run time = 3.581505592 Run time without initialization = 3.410325648 Average number of zones advanced per microsecond: 0.769 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.5798 ... 3.5809 ... 3.5816 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1490 2.2291 2.3327 65.13% Gravity::make_radial_gravity() 21 0.3209 0.3339 0.3614 10.09% check_for_negative_density() 10 0.1106 0.2146 0.3005 8.39% FabArray::ParallelCopy_finish() 41 0.05425 0.07112 0.1078 3.01% Castro::initData() 1 0.03731 0.07167 0.1015 2.83% Castro::estTimeStep() 21 0.02668 0.06531 0.09961 2.78% amrex::Copy() 193 0.06568 0.08855 0.09795 2.73% FabArray::setVal() 143 0.06193 0.06784 0.07484 2.09% Castro::reset_internal_energy(Fab) 1008 0.04586 0.04768 0.05122 1.43% Castro::normalize_species() 62 0.04585 0.0478 0.04947 1.38% FabArray::ParallelCopy_nowait() 41 0.03257 0.04417 0.04774 1.33% StateData::FillBoundary(geom) 41 0.03266 0.0362 0.04256 1.19% FillPatchIterator::Initialize 41 0.02767 0.03722 0.03988 1.11% Gravity::interpolate_monopole_grav() 21 0.02715 0.02774 0.02833 0.79% Castro::construct_new_gravity_source() 10 0.02289 0.02516 0.02822 0.79% Castro::computeTemp() 63 0.01849 0.01909 0.02017 0.56% Castro::initialize_do_advance() 10 0.01461 0.01853 0.01976 0.55% Castro::initialize_advance() 10 0.009908 0.01219 0.01793 0.50% FabArray::setDomainBndry() 41 0.007215 0.01322 0.0159 0.44% VisMF::Write(FabArray) 2 0.009339 0.01058 0.01543 0.43% Amr::writePlotFile() 2 0.008246 0.01267 0.01419 0.40% FabArray::Saxpy() 20 0.01033 0.01252 0.01376 0.38% MultiFab::contains_nan() 20 0.01115 0.01207 0.01357 0.38% Castro::construct_old_gravity_source() 10 0.006256 0.009351 0.01038 0.29% Castro::initMFs() 1 0.006398 0.007237 0.008868 0.25% Amr::coarseTimeStep() 10 0.001403 0.005028 0.006574 0.18% Castro::construct_new_source() 50 0.005012 0.006191 0.006555 0.18% main() 1 0.003585 0.004643 0.005333 0.15% Gravity::get_new_grav_vector() 11 0.002578 0.003872 0.004485 0.13% Gravity::get_old_grav_vector() 10 0.001372 0.002403 0.002989 0.08% Castro::finalize_do_advance() 10 0.0005647 0.00102 0.0011 0.03% AmrLevel::FillPatch() 41 0.0007964 0.0009639 0.001046 0.03% Amr::timeStep() 10 0.0001547 0.0002179 0.0005101 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002829 0.0003076 0.000326 0.01% Castro::clean_state() 62 0.0001384 0.0001685 0.000225 0.01% Castro::do_advance_ctu() 10 0.0001679 0.000185 0.0002092 0.01% StateDataPhysBCFunct::() 41 0.0001263 0.0001474 0.0001684 0.00% FillPatchIterator::FillFromLevel0() 41 9.759e-05 0.0001253 0.0001399 0.00% Castro::do_old_sources() 10 7.405e-05 0.0001041 0.0001272 0.00% FabArray::ParallelCopy() 41 8.692e-05 0.0001007 0.0001091 0.00% Castro::do_new_sources() 10 5.369e-05 7.542e-05 0.0001082 0.00% Amr::FinalizeInit() 1 3.921e-06 1.543e-05 8.815e-05 0.00% Castro::construct_old_source() 50 5.103e-05 7.285e-05 8.363e-05 0.00% Castro::Castro() 1 3.976e-05 5.8e-05 8.212e-05 0.00% FillPatchSingleLevel 41 6.287e-05 7.132e-05 7.717e-05 0.00% Amr::defBaseLevel() 1 4.721e-05 5.578e-05 6.496e-05 0.00% Castro::advance() 10 4.202e-05 5.326e-05 6.259e-05 0.00% Castro::construct_old_gravity() 10 4.104e-05 4.624e-05 5.982e-05 0.00% Castro::subcycle_advance_ctu() 10 4.496e-05 5.293e-05 5.807e-05 0.00% Castro::apply_source_to_state() 20 3.924e-05 4.756e-05 5.511e-05 0.00% Castro::construct_new_gravity() 10 3.42e-05 4.066e-05 5.102e-05 0.00% Castro::expand_state() 10 1.857e-05 2.968e-05 3.693e-05 0.00% Castro::check_for_nan() 20 2.283e-05 2.726e-05 3.286e-05 0.00% Castro::post_init() 1 1.399e-05 1.601e-05 1.887e-05 0.00% Castro::post_timestep() 10 1.564e-05 1.773e-05 1.869e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.678e-06 1.154e-05 1.576e-05 0.00% Castro::computeNewDt() 9 1.046e-05 1.147e-05 1.263e-05 0.00% Amr::InitializeInit() 1 2.396e-06 3.311e-06 6.69e-06 0.00% Castro::computeInitialDt() 2 3.547e-06 4.307e-06 5.545e-06 0.00% Amr::init() 1 1.827e-06 2.329e-06 2.776e-06 0.00% Amr::initialInit() 1 1.735e-06 1.958e-06 2.211e-06 0.00% Other 260 0.01643 0.01915 0.02237 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.58 3.581 3.582 100.00% Amr::coarseTimeStep() 10 3.395 3.395 3.395 94.80% Amr::timeStep() 10 3.376 3.378 3.382 94.41% Castro::advance() 10 3.36 3.361 3.361 93.85% Castro::subcycle_advance_ctu() 10 3.276 3.286 3.293 91.94% Castro::do_advance_ctu() 10 3.276 3.286 3.293 91.94% Castro::construct_ctu_hydro_source() 10 2.457 2.466 2.472 69.01% Gravity::make_radial_gravity() 21 0.3411 0.3527 0.3724 10.40% check_for_negative_density() 10 0.1106 0.2146 0.3005 8.39% AmrLevel::FillPatch() 41 0.2291 0.2383 0.2519 7.03% Gravity::get_new_grav_vector() 11 0.2331 0.2361 0.2378 6.64% Castro::construct_old_gravity() 10 0.196 0.2066 0.2229 6.22% Gravity::get_old_grav_vector() 10 0.1952 0.2059 0.2223 6.21% FillPatchIterator::Initialize 41 0.1896 0.2025 0.2112 5.90% Castro::construct_new_gravity() 10 0.2077 0.2099 0.2111 5.89% Castro::initialize_do_advance() 10 0.1802 0.1896 0.2013 5.62% FillPatchIterator::FillFromLevel0() 41 0.1373 0.152 0.1735 4.85% FillPatchSingleLevel 41 0.1372 0.1519 0.1734 4.84% Amr::init() 1 0.1706 0.1708 0.1708 4.77% Amr::initialInit() 1 0.1538 0.1541 0.1543 4.31% Castro::expand_state() 10 0.127 0.1325 0.1429 3.99% FabArray::ParallelCopy() 41 0.1009 0.1155 0.1406 3.92% Castro::clean_state() 62 0.1168 0.1204 0.1263 3.53% Amr::InitializeInit() 1 0.05996 0.09243 0.124 3.46% Amr::defBaseLevel() 1 0.05996 0.09242 0.124 3.46% Castro::do_old_sources() 10 0.1013 0.1087 0.1173 3.28% FabArray::ParallelCopy_finish() 41 0.05425 0.07112 0.1078 3.01% Castro::initData() 1 0.0407 0.07533 0.1051 2.93% Castro::estTimeStep() 21 0.02668 0.06531 0.09961 2.78% amrex::Copy() 193 0.06568 0.08855 0.09795 2.73% Amr::FinalizeInit() 1 0.03019 0.0617 0.09379 2.62% Castro::initialize_advance() 10 0.06381 0.07114 0.08161 2.28% FabArray::setVal() 143 0.06193 0.06784 0.07484 2.09% Castro::do_new_sources() 10 0.06287 0.06643 0.07332 2.05% Castro::computeTemp() 63 0.06506 0.06707 0.07172 2.00% Castro::computeInitialDt() 2 0.002278 0.03378 0.06611 1.85% Castro::reset_internal_energy(MultiFab) 63 0.04616 0.04798 0.05155 1.44% Castro::reset_internal_energy(Fab) 1008 0.04586 0.04768 0.05122 1.43% Castro::normalize_species() 62 0.04585 0.0478 0.04947 1.38% FabArray::ParallelCopy_nowait() 41 0.03267 0.04427 0.04783 1.34% StateDataPhysBCFunct::() 41 0.0328 0.03635 0.04271 1.19% StateData::FillBoundary(geom) 41 0.03266 0.0362 0.04256 1.19% Castro::construct_new_source() 50 0.0279 0.03135 0.03477 0.97% Gravity::interpolate_monopole_grav() 21 0.02715 0.02774 0.02833 0.79% Castro::construct_new_gravity_source() 10 0.02289 0.02516 0.02822 0.79% Castro::post_init() 1 0.02721 0.02747 0.02764 0.77% Amr::writePlotFile() 2 0.02632 0.02665 0.02688 0.75% Castro::finalize_do_advance() 10 0.01449 0.02158 0.02508 0.70% Castro::post_timestep() 10 0.01608 0.01691 0.01997 0.56% FabArray::setDomainBndry() 41 0.007215 0.01322 0.0159 0.44% VisMF::Write(FabArray) 2 0.009339 0.01058 0.01543 0.43% Castro::apply_source_to_state() 20 0.01037 0.01256 0.01381 0.39% FabArray::Saxpy() 20 0.01033 0.01252 0.01376 0.38% Castro::check_for_nan() 20 0.01117 0.0121 0.01361 0.38% MultiFab::contains_nan() 20 0.01115 0.01207 0.01357 0.38% Castro::Castro() 1 0.009523 0.01074 0.01215 0.34% Castro::computeNewDt() 9 0.01097 0.01099 0.01102 0.31% Castro::construct_old_source() 50 0.006307 0.009424 0.01045 0.29% Castro::construct_old_gravity_source() 10 0.006256 0.009351 0.01038 0.29% Castro::initMFs() 1 0.006398 0.007237 0.008868 0.25% AmrLevel::AmrLevel(dm) 1 0.005363 0.006115 0.007728 0.22% Other 260 0.02078 0.02446 0.02864 0.80% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 36 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8669 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6786 KiB 6793 KiB 6795 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4570 KiB 4584 KiB 4595 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 242 KiB 251 KiB 268 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 17 KiB 22 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2811 KiB 2814 KiB 2815 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 242 KiB 251 KiB 265 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 43 KiB 50 KiB 60 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 83 KiB 84 KiB 85 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 73 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.01-29-g69f1ac884c6a) finalized