Initializing AMReX (25.01-29-g69f1ac884c6a)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.01-29-g69f1ac884c6a) initialized Starting run at 06:19:49 UTC on 2025-01-30. Successfully read inputs file ... Castro git describe: 25.01-9-g9fdc8cb81 AMReX git describe: 25.01-29-g69f1ac884 Microphysics git describe: 25.01-38-g5b2c0b29 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014712664 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.345362019 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.342660426 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.339353015 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.343206944 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.368475436 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.343560523 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.319902024 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.319251093 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.341958439 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.328044154 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010050613 seconds Ending run at 06:19:52 UTC on 2025-01-30. Run time = 3.588919448 Run time without initialization = 3.408349743 Average number of zones advanced per microsecond: 0.769 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.5881 ... 3.5887 ... 3.5890 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1258 2.2723 2.3492 65.46% Gravity::make_radial_gravity() 21 0.3204 0.3272 0.3391 9.45% check_for_negative_density() 10 0.04696 0.1264 0.2807 7.82% Castro::estTimeStep() 21 0.02323 0.07054 0.1196 3.33% FabArray::ParallelCopy_finish() 41 0.04519 0.05811 0.1154 3.21% amrex::Copy() 193 0.08972 0.1079 0.1137 3.17% Castro::initData() 1 0.03715 0.0726 0.1121 3.12% FabArray::setVal() 143 0.06198 0.07591 0.08008 2.23% FabArray::ParallelCopy_nowait() 41 0.03926 0.05307 0.06127 1.71% Castro::normalize_species() 62 0.04961 0.05372 0.05936 1.65% Castro::reset_internal_energy(Fab) 1008 0.04616 0.04903 0.05153 1.44% FillPatchIterator::Initialize 41 0.03139 0.04161 0.04582 1.28% StateData::FillBoundary(geom) 41 0.03486 0.03866 0.04164 1.16% Castro::construct_new_gravity_source() 10 0.0215 0.02702 0.02888 0.80% Gravity::interpolate_monopole_grav() 21 0.02727 0.02777 0.02851 0.79% Castro::initialize_do_advance() 10 0.01518 0.02147 0.02305 0.64% Castro::computeTemp() 63 0.01885 0.01988 0.02095 0.58% FabArray::setDomainBndry() 41 0.009602 0.01593 0.01852 0.52% FabArray::Saxpy() 20 0.01053 0.01588 0.01714 0.48% VisMF::Write(FabArray) 2 0.009447 0.0104 0.01489 0.42% MultiFab::contains_nan() 20 0.01285 0.01357 0.0143 0.40% Castro::construct_old_gravity_source() 10 0.007686 0.01179 0.01294 0.36% Castro::initialize_advance() 10 0.01074 0.01173 0.01224 0.34% Amr::writePlotFile() 2 0.007577 0.01105 0.01173 0.33% Castro::initMFs() 1 0.006492 0.007754 0.01045 0.29% Castro::construct_new_source() 50 0.005637 0.007627 0.008216 0.23% main() 1 0.00516 0.005736 0.005986 0.17% Amr::coarseTimeStep() 10 0.002046 0.003139 0.00471 0.13% Gravity::get_new_grav_vector() 11 0.003128 0.003932 0.004352 0.12% Gravity::get_old_grav_vector() 10 0.002201 0.002822 0.003199 0.09% AmrLevel::FillPatch() 41 0.001055 0.001191 0.001339 0.04% Castro::finalize_do_advance() 10 0.001164 0.001223 0.00125 0.03% Amr::timeStep() 10 0.0001454 0.000225 0.0005776 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0002981 0.0003212 0.0003466 0.01% Castro::do_advance_ctu() 10 0.0001853 0.0002128 0.0002527 0.01% Castro::clean_state() 62 0.0001649 0.0001894 0.0002076 0.01% FillPatchIterator::FillFromLevel0() 41 0.000132 0.0001527 0.00019 0.01% StateDataPhysBCFunct::() 41 0.0001458 0.0001563 0.0001693 0.00% FabArray::ParallelCopy() 41 0.0001074 0.0001269 0.000149 0.00% Castro::do_old_sources() 10 8.663e-05 0.0001204 0.0001458 0.00% Castro::do_new_sources() 10 6.552e-05 9.218e-05 0.0001288 0.00% Castro::construct_old_source() 50 7.236e-05 8.942e-05 0.0001013 0.00% Amr::FinalizeInit() 1 4.254e-06 1.741e-05 9.607e-05 0.00% Castro::Castro() 1 4.643e-05 6.995e-05 9.282e-05 0.00% FillPatchSingleLevel 41 7.756e-05 8.41e-05 9.049e-05 0.00% Castro::subcycle_advance_ctu() 10 5.677e-05 6.521e-05 7.451e-05 0.00% Castro::construct_old_gravity() 10 4.779e-05 5.644e-05 7.232e-05 0.00% Castro::apply_source_to_state() 20 5.323e-05 6.036e-05 7.097e-05 0.00% Amr::defBaseLevel() 1 4.773e-05 5.85e-05 6.883e-05 0.00% Castro::advance() 10 4.888e-05 6.073e-05 6.824e-05 0.00% Castro::construct_new_gravity() 10 3.618e-05 4.246e-05 5.336e-05 0.00% Castro::expand_state() 10 2.887e-05 4.008e-05 4.966e-05 0.00% Castro::check_for_nan() 20 2.836e-05 3.218e-05 3.937e-05 0.00% Castro::post_timestep() 10 1.662e-05 2.088e-05 2.686e-05 0.00% Castro::post_init() 1 1.434e-05 1.659e-05 2.398e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.661e-06 1.204e-05 1.995e-05 0.00% Amr::init() 1 2.24e-06 4.829e-06 1.956e-05 0.00% Castro::computeNewDt() 9 1.097e-05 1.183e-05 1.258e-05 0.00% Amr::InitializeInit() 1 2.611e-06 3.462e-06 6.112e-06 0.00% Castro::computeInitialDt() 2 3.361e-06 3.905e-06 4.569e-06 0.00% Amr::initialInit() 1 1.63e-06 2.341e-06 3.207e-06 0.00% Other 260 0.01646 0.01934 0.02327 0.65% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.588 3.589 3.589 100.00% Amr::coarseTimeStep() 10 3.392 3.392 3.392 94.52% Amr::timeStep() 10 3.377 3.379 3.38 94.17% Castro::advance() 10 3.359 3.36 3.361 93.64% Castro::subcycle_advance_ctu() 10 3.273 3.279 3.295 91.80% Castro::do_advance_ctu() 10 3.273 3.279 3.295 91.80% Castro::construct_ctu_hydro_source() 10 2.419 2.422 2.429 67.67% Gravity::make_radial_gravity() 21 0.3429 0.351 0.3587 9.99% check_for_negative_density() 10 0.04696 0.1264 0.2807 7.82% AmrLevel::FillPatch() 41 0.241 0.2552 0.278 7.75% FillPatchIterator::Initialize 41 0.1943 0.208 0.2369 6.60% Gravity::get_new_grav_vector() 11 0.2263 0.2289 0.2303 6.42% Castro::construct_old_gravity() 10 0.2147 0.2196 0.2281 6.35% Gravity::get_old_grav_vector() 10 0.2136 0.2187 0.2274 6.33% Castro::initialize_do_advance() 10 0.1951 0.2032 0.2177 6.07% Castro::construct_new_gravity() 10 0.2034 0.2059 0.2072 5.77% FillPatchIterator::FillFromLevel0() 41 0.138 0.1505 0.1959 5.46% FillPatchSingleLevel 41 0.1378 0.1503 0.1957 5.45% Amr::init() 1 0.1801 0.1802 0.1802 5.02% Amr::initialInit() 1 0.165 0.1652 0.1653 4.61% Castro::expand_state() 10 0.1335 0.1408 0.162 4.51% FabArray::ParallelCopy() 41 0.1002 0.1114 0.1549 4.32% Amr::InitializeInit() 1 0.05725 0.09446 0.1383 3.85% Amr::defBaseLevel() 1 0.05725 0.09445 0.1383 3.85% Castro::clean_state() 62 0.1221 0.1287 0.135 3.76% Castro::do_old_sources() 10 0.1153 0.1195 0.1232 3.43% Castro::estTimeStep() 21 0.02323 0.07054 0.1196 3.33% Castro::initData() 1 0.04129 0.07646 0.1159 3.23% FabArray::ParallelCopy_finish() 41 0.04519 0.05811 0.1154 3.21% amrex::Copy() 193 0.08972 0.1079 0.1137 3.17% Amr::FinalizeInit() 1 0.0269 0.07072 0.108 3.01% Castro::computeInitialDt() 2 0.002195 0.0461 0.08338 2.32% Castro::initialize_advance() 10 0.06172 0.07778 0.08331 2.32% FabArray::setVal() 143 0.06198 0.07591 0.08008 2.23% Castro::do_new_sources() 10 0.06051 0.07299 0.07596 2.12% Castro::computeTemp() 63 0.06533 0.06923 0.07214 2.01% FabArray::ParallelCopy_nowait() 41 0.03939 0.05318 0.06136 1.71% Castro::normalize_species() 62 0.04961 0.05372 0.05936 1.65% Castro::reset_internal_energy(MultiFab) 63 0.04647 0.04935 0.05183 1.44% Castro::reset_internal_energy(Fab) 1008 0.04616 0.04903 0.05153 1.44% StateDataPhysBCFunct::() 41 0.035 0.03882 0.04179 1.16% StateData::FillBoundary(geom) 41 0.03486 0.03866 0.04164 1.16% Castro::construct_new_source() 50 0.02714 0.03465 0.0362 1.01% Castro::finalize_do_advance() 10 0.01293 0.01631 0.02997 0.84% Castro::construct_new_gravity_source() 10 0.0215 0.02702 0.02888 0.80% Gravity::interpolate_monopole_grav() 21 0.02727 0.02777 0.02851 0.79% Amr::writePlotFile() 2 0.02505 0.02515 0.02532 0.71% Castro::post_init() 1 0.02376 0.02397 0.02414 0.67% Castro::post_timestep() 10 0.01716 0.01803 0.01896 0.53% FabArray::setDomainBndry() 41 0.009602 0.01593 0.01852 0.52% Castro::apply_source_to_state() 20 0.01058 0.01594 0.01721 0.48% FabArray::Saxpy() 20 0.01053 0.01588 0.01714 0.48% VisMF::Write(FabArray) 2 0.009447 0.0104 0.01489 0.42% Castro::Castro() 1 0.01039 0.01173 0.01485 0.41% Castro::check_for_nan() 20 0.01288 0.0136 0.01434 0.40% MultiFab::contains_nan() 20 0.01285 0.01357 0.0143 0.40% Castro::construct_old_source() 50 0.007759 0.01188 0.01304 0.36% Castro::construct_old_gravity_source() 10 0.007686 0.01179 0.01294 0.36% Castro::initMFs() 1 0.006492 0.007754 0.01045 0.29% Castro::computeNewDt() 9 0.009352 0.00936 0.009369 0.26% AmrLevel::AmrLevel(dm) 1 0.005302 0.006064 0.008033 0.22% Other 260 0.02069 0.0252 0.0298 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 34 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8668 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6767 KiB 6774 KiB 6776 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4556 KiB 4564 KiB 4581 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 252 KiB 267 KiB 298 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 18 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2804 KiB 2808 KiB 2809 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 243 KiB 249 KiB 254 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 40 KiB 46 KiB 67 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 81 KiB 81 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 76 KiB 78 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.01-29-g69f1ac884c6a) finalized