Initializing AMReX (25.01-29-g69f1ac884c6a)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.01-29-g69f1ac884c6a) initialized Starting run at 06:19:34 UTC on 2025-01-31. Successfully read inputs file ... Castro git describe: 25.01-10-ge9045ee40 AMReX git describe: 25.01-29-g69f1ac884 Microphysics git describe: 25.01-40-g76cbfa3a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.021423224 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.443636463 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.429819124 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.444372449 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.439362848 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.394829574 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.392637797 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.387240745 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.38080615 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.366956569 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.360942128 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012729829 seconds Ending run at 06:19:38 UTC on 2025-01-31. Run time = 4.270831023 Run time without initialization = 4.062401755 Average number of zones advanced per microsecond: 0.645 Average number of zones advanced per microsecond per rank: 0.081 TinyProfiler total time across processes [min...avg...max]: 4.2684 ... 4.2699 ... 4.2710 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.5110 2.6980 2.7882 65.28% Gravity::make_radial_gravity() 21 0.3175 0.3309 0.3513 8.22% check_for_negative_density() 10 0.04474 0.1381 0.3338 7.82% amrex::Copy() 193 0.1281 0.1488 0.1584 3.71% Castro::initData() 1 0.0379 0.07562 0.1218 2.85% FabArray::setVal() 143 0.104 0.1118 0.115 2.69% Castro::estTimeStep() 21 0.03294 0.07342 0.1102 2.58% FabArray::ParallelCopy_finish() 41 0.07927 0.08603 0.1039 2.43% FabArray::ParallelCopy_nowait() 41 0.06695 0.07357 0.07805 1.83% FillPatchIterator::Initialize 41 0.05703 0.06407 0.06726 1.57% Castro::reset_internal_energy(Fab) 1008 0.05635 0.05785 0.05939 1.39% StateData::FillBoundary(geom) 41 0.04374 0.04792 0.05617 1.32% Castro::normalize_species() 62 0.04788 0.04926 0.05167 1.21% Castro::construct_new_gravity_source() 10 0.03206 0.03512 0.0365 0.85% Gravity::interpolate_monopole_grav() 21 0.02724 0.0283 0.03071 0.72% FabArray::setDomainBndry() 41 0.02417 0.02689 0.03065 0.72% Castro::initialize_do_advance() 10 0.0253 0.02646 0.02807 0.66% FabArray::Saxpy() 20 0.0217 0.0249 0.02612 0.61% Castro::computeTemp() 63 0.02123 0.02189 0.02255 0.53% Castro::initialize_advance() 10 0.01749 0.01868 0.01938 0.45% Castro::construct_old_gravity_source() 10 0.01527 0.01793 0.01896 0.44% VisMF::Write(FabArray) 2 0.01252 0.01435 0.0182 0.43% MultiFab::contains_nan() 20 0.01436 0.01544 0.01726 0.40% Amr::writePlotFile() 2 0.0103 0.01434 0.01612 0.38% Castro::initMFs() 1 0.008753 0.01043 0.01368 0.32% Castro::construct_new_source() 50 0.009171 0.01057 0.0114 0.27% main() 1 0.005916 0.00743 0.008528 0.20% Gravity::get_new_grav_vector() 11 0.005135 0.005895 0.006291 0.15% Gravity::get_old_grav_vector() 10 0.002922 0.003314 0.003797 0.09% Amr::coarseTimeStep() 10 0.001629 0.002048 0.002667 0.06% AmrLevel::FillPatch() 41 0.001357 0.001615 0.001956 0.05% Castro::finalize_do_advance() 10 0.001187 0.001245 0.001292 0.03% Amr::timeStep() 10 0.0001572 0.0002094 0.0004179 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003684 0.0003896 0.0003975 0.01% Castro::do_advance_ctu() 10 0.0002065 0.0002609 0.0003089 0.01% Castro::clean_state() 62 0.0002072 0.000239 0.0002608 0.01% StateDataPhysBCFunct::() 41 0.0001902 0.0002074 0.0002414 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001613 0.0001842 0.0002096 0.00% FabArray::ParallelCopy() 41 0.0001299 0.0001585 0.000191 0.00% Castro::do_old_sources() 10 0.0001087 0.0001478 0.0001768 0.00% Castro::construct_old_source() 50 8.926e-05 0.0001223 0.0001551 0.00% FillPatchSingleLevel 41 9.688e-05 0.0001139 0.0001334 0.00% Castro::Castro() 1 6.114e-05 9.585e-05 0.0001281 0.00% Castro::do_new_sources() 10 7.903e-05 0.0001044 0.0001277 0.00% Castro::apply_source_to_state() 20 7.131e-05 9.127e-05 0.0001095 0.00% Castro::subcycle_advance_ctu() 10 7.572e-05 8.586e-05 0.0001019 0.00% Amr::FinalizeInit() 1 4.44e-06 1.716e-05 9.859e-05 0.00% Castro::advance() 10 6.211e-05 7.138e-05 8.049e-05 0.00% Castro::construct_old_gravity() 10 4.928e-05 5.949e-05 7.313e-05 0.00% Amr::defBaseLevel() 1 5.576e-05 6.21e-05 7.061e-05 0.00% Castro::construct_new_gravity() 10 3.704e-05 4.825e-05 6.155e-05 0.00% Castro::expand_state() 10 3.561e-05 4.766e-05 5.655e-05 0.00% Castro::check_for_nan() 20 3.406e-05 3.642e-05 3.919e-05 0.00% Castro::post_init() 1 1.59e-05 1.892e-05 2.727e-05 0.00% Castro::post_timestep() 10 1.792e-05 2.102e-05 2.537e-05 0.00% Castro::computeNewDt() 9 1.079e-05 1.33e-05 1.534e-05 0.00% Amr::init() 1 2.682e-06 4.436e-06 8.039e-06 0.00% Castro::computeInitialDt() 2 4.225e-06 4.963e-06 5.774e-06 0.00% Amr::InitializeInit() 1 2.46e-06 3.318e-06 4.646e-06 0.00% Amr::initialInit() 1 1.825e-06 2.139e-06 2.714e-06 0.00% Other 261 0.02164 0.02469 0.0265 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.268 4.27 4.271 100.00% Amr::coarseTimeStep() 10 4.041 4.041 4.041 94.62% Amr::timeStep() 10 4.028 4.028 4.029 94.33% Castro::advance() 10 4.01 4.011 4.011 93.92% Castro::subcycle_advance_ctu() 10 3.889 3.892 3.899 91.28% Castro::do_advance_ctu() 10 3.889 3.892 3.899 91.28% Castro::construct_ctu_hydro_source() 10 2.855 2.861 2.869 67.18% AmrLevel::FillPatch() 41 0.3513 0.3637 0.3838 8.99% Gravity::make_radial_gravity() 21 0.3535 0.3654 0.3813 8.93% check_for_negative_density() 10 0.04474 0.1381 0.3338 7.82% FillPatchIterator::Initialize 41 0.2896 0.2993 0.3116 7.30% Castro::initialize_do_advance() 10 0.2767 0.2857 0.2968 6.95% Gravity::get_new_grav_vector() 11 0.259 0.2597 0.2616 6.13% Castro::construct_old_gravity() 10 0.2181 0.2284 0.2411 5.65% Gravity::get_old_grav_vector() 10 0.217 0.2274 0.24 5.62% Castro::construct_new_gravity() 10 0.2275 0.2285 0.2303 5.39% Castro::expand_state() 10 0.2003 0.2104 0.2232 5.23% FillPatchIterator::FillFromLevel0() 41 0.1992 0.2083 0.2188 5.12% FillPatchSingleLevel 41 0.1991 0.2081 0.2186 5.12% Amr::init() 1 0.2079 0.2081 0.2081 4.87% Amr::initialInit() 1 0.1863 0.1864 0.1866 4.37% FabArray::ParallelCopy() 41 0.1537 0.1599 0.1716 4.02% Castro::do_old_sources() 10 0.1574 0.1605 0.164 3.84% amrex::Copy() 193 0.1281 0.1488 0.1584 3.71% Amr::InitializeInit() 1 0.06622 0.1044 0.1512 3.54% Amr::defBaseLevel() 1 0.06622 0.1044 0.1512 3.54% Castro::clean_state() 62 0.1328 0.1366 0.1392 3.26% Castro::initData() 1 0.04269 0.08022 0.1261 2.95% Amr::FinalizeInit() 1 0.03523 0.08202 0.1201 2.81% Castro::initialize_advance() 10 0.1069 0.1133 0.1165 2.73% FabArray::setVal() 143 0.104 0.1118 0.115 2.69% Castro::estTimeStep() 21 0.03294 0.07342 0.1102 2.58% FabArray::ParallelCopy_finish() 41 0.07927 0.08603 0.1039 2.43% Castro::do_new_sources() 10 0.08253 0.08884 0.09167 2.15% Castro::computeInitialDt() 2 0.002271 0.04906 0.08711 2.04% Castro::computeTemp() 63 0.07812 0.08013 0.08233 1.93% FabArray::ParallelCopy_nowait() 41 0.06706 0.0737 0.07816 1.83% Castro::reset_internal_energy(MultiFab) 63 0.05675 0.05824 0.05978 1.40% Castro::reset_internal_energy(Fab) 1008 0.05635 0.05785 0.05939 1.39% StateDataPhysBCFunct::() 41 0.04395 0.04812 0.05637 1.32% StateData::FillBoundary(geom) 41 0.04374 0.04792 0.05617 1.32% Castro::normalize_species() 62 0.04788 0.04926 0.05167 1.21% Castro::construct_new_source() 50 0.04123 0.04569 0.04786 1.12% Castro::construct_new_gravity_source() 10 0.03206 0.03512 0.0365 0.85% Amr::writePlotFile() 2 0.03428 0.03447 0.03468 0.81% Castro::post_init() 1 0.03225 0.03239 0.0326 0.76% Gravity::interpolate_monopole_grav() 21 0.02724 0.0283 0.03071 0.72% FabArray::setDomainBndry() 41 0.02417 0.02689 0.03065 0.72% Castro::apply_source_to_state() 20 0.02177 0.02499 0.02623 0.61% FabArray::Saxpy() 20 0.0217 0.0249 0.02612 0.61% Castro::finalize_do_advance() 10 0.01274 0.01597 0.02348 0.55% Castro::construct_old_source() 50 0.01536 0.01805 0.01909 0.45% Castro::construct_old_gravity_source() 10 0.01527 0.01793 0.01896 0.44% Castro::Castro() 1 0.01407 0.01614 0.01872 0.44% VisMF::Write(FabArray) 2 0.01252 0.01435 0.0182 0.43% Castro::post_timestep() 10 0.01679 0.01713 0.01765 0.41% Castro::check_for_nan() 20 0.0144 0.01548 0.0173 0.40% MultiFab::contains_nan() 20 0.01436 0.01544 0.01726 0.40% Castro::initMFs() 1 0.008753 0.01043 0.01368 0.32% Castro::computeNewDt() 9 0.009652 0.009658 0.009668 0.23% Other 261 0.03544 0.03977 0.04252 1.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 33 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8649 KiB 8662 KiB 8667 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6770 KiB 6780 KiB 6782 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7126 KiB 7137 KiB 7140 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4544 KiB 4552 KiB 4561 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 315 KiB 326 KiB 345 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 19 KiB 21 KiB 25 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2811 KiB 2816 KiB 2817 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 211 KiB 218 KiB 227 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 54 KiB 58 KiB 64 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2024 KiB 2028 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 78 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 65 KiB 68 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.01-29-g69f1ac884c6a) finalized