Initializing AMReX (25.01-29-g69f1ac884c6a)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.01-29-g69f1ac884c6a) initialized Starting run at 06:19:25 UTC on 2025-02-03. Successfully read inputs file ... Castro git describe: 25.01-10-ge9045ee40 AMReX git describe: 25.01-29-g69f1ac884 Microphysics git describe: 25.01-40-g76cbfa3a reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.020950537 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.444754974 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.406900147 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.397060528 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.41598958 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.395301975 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.372730338 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.379792196 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.367304611 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.382699819 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.378752913 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012969106 seconds Ending run at 06:19:29 UTC on 2025-02-03. Run time = 4.147579443 Run time without initialization = 3.962238909 Average number of zones advanced per microsecond: 0.662 Average number of zones advanced per microsecond per rank: 0.083 TinyProfiler total time across processes [min...avg...max]: 4.1460 ... 4.1473 ... 4.1476 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2605 2.5688 2.7093 65.32% check_for_negative_density() 10 0.06144 0.2066 0.5261 12.69% Gravity::make_radial_gravity() 21 0.3347 0.3513 0.3843 9.27% amrex::Copy() 193 0.09842 0.1292 0.1444 3.48% FabArray::setVal() 143 0.09409 0.1079 0.114 2.75% FabArray::ParallelCopy_finish() 41 0.06024 0.07267 0.1071 2.58% Castro::estTimeStep() 21 0.02654 0.06104 0.1033 2.49% Castro::initData() 1 0.04018 0.0732 0.1013 2.44% FabArray::ParallelCopy_nowait() 41 0.05533 0.06652 0.071 1.71% FillPatchIterator::Initialize 41 0.05047 0.0593 0.06508 1.57% Castro::reset_internal_energy(Fab) 1008 0.05357 0.05483 0.0571 1.38% Castro::normalize_species() 62 0.04721 0.05111 0.05462 1.32% StateData::FillBoundary(geom) 41 0.0368 0.04434 0.05049 1.22% Castro::construct_new_gravity_source() 10 0.03033 0.03346 0.03499 0.84% Castro::initialize_do_advance() 10 0.02524 0.028 0.03119 0.75% Gravity::interpolate_monopole_grav() 21 0.02727 0.02851 0.03023 0.73% FabArray::setDomainBndry() 41 0.0166 0.02343 0.02844 0.69% FabArray::Saxpy() 20 0.01668 0.02088 0.02274 0.55% Castro::computeTemp() 63 0.02129 0.02179 0.02273 0.55% VisMF::Write(FabArray) 2 0.01246 0.01393 0.01875 0.45% Castro::initialize_advance() 10 0.01528 0.01727 0.0184 0.44% Castro::construct_old_gravity_source() 10 0.01328 0.01678 0.018 0.43% MultiFab::contains_nan() 20 0.01462 0.01539 0.01641 0.40% Amr::writePlotFile() 2 0.01016 0.01477 0.01629 0.39% Castro::initMFs() 1 0.008566 0.009544 0.01192 0.29% Castro::construct_new_source() 50 0.006946 0.008904 0.009696 0.23% main() 1 0.005721 0.007045 0.007378 0.18% Gravity::get_new_grav_vector() 11 0.003931 0.005485 0.006459 0.16% Amr::coarseTimeStep() 10 0.00198 0.002931 0.004615 0.11% Gravity::get_old_grav_vector() 10 0.002765 0.003307 0.003615 0.09% AmrLevel::FillPatch() 41 0.001075 0.001176 0.001412 0.03% Castro::finalize_do_advance() 10 0.00123 0.001253 0.001284 0.03% Amr::timeStep() 10 0.0001514 0.0002438 0.0005903 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003398 0.0003631 0.0003764 0.01% Castro::do_advance_ctu() 10 0.0002066 0.0002452 0.000308 0.01% Castro::clean_state() 62 0.0001918 0.0002256 0.0002586 0.01% StateDataPhysBCFunct::() 41 0.0001654 0.0001806 0.0002259 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001579 0.0001821 0.0002019 0.00% Castro::do_old_sources() 10 0.0001122 0.0001407 0.0001772 0.00% FabArray::ParallelCopy() 41 0.0001287 0.0001473 0.0001646 0.00% Castro::Castro() 1 6.359e-05 0.0001148 0.0001458 0.00% Castro::construct_old_source() 50 9.504e-05 0.0001101 0.000138 0.00% FillPatchSingleLevel 41 9.23e-05 0.0001001 0.0001182 0.00% Castro::apply_source_to_state() 20 6.54e-05 8.185e-05 0.0001144 0.00% Amr::FinalizeInit() 1 4.582e-06 1.883e-05 0.0001071 0.00% Castro::do_new_sources() 10 7.223e-05 8.689e-05 0.0001021 0.00% Castro::subcycle_advance_ctu() 10 6.599e-05 7.833e-05 9.199e-05 0.00% Amr::defBaseLevel() 1 4.451e-05 6.814e-05 8.86e-05 0.00% Castro::advance() 10 6.08e-05 7.353e-05 8.706e-05 0.00% Castro::construct_old_gravity() 10 4.158e-05 5.14e-05 6.074e-05 0.00% Castro::expand_state() 10 3.882e-05 4.844e-05 5.869e-05 0.00% Castro::construct_new_gravity() 10 3.604e-05 4.261e-05 5.386e-05 0.00% Castro::check_for_nan() 20 3.073e-05 3.478e-05 3.937e-05 0.00% Castro::post_timestep() 10 1.739e-05 2.117e-05 2.718e-05 0.00% Castro::post_init() 1 1.534e-05 1.769e-05 2.043e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.392e-06 1.184e-05 1.535e-05 0.00% Castro::computeNewDt() 9 1.067e-05 1.134e-05 1.232e-05 0.00% Amr::init() 1 2.245e-06 3.662e-06 8.365e-06 0.00% Amr::InitializeInit() 1 2.951e-06 4.729e-06 8.258e-06 0.00% Castro::computeInitialDt() 2 4.098e-06 5.142e-06 6.114e-06 0.00% Amr::initialInit() 1 2.281e-06 2.58e-06 2.922e-06 0.00% Other 260 0.02102 0.02389 0.02648 0.64% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.146 4.147 4.148 100.00% Amr::coarseTimeStep() 10 3.942 3.942 3.942 95.04% Amr::timeStep() 10 3.926 3.928 3.929 94.73% Castro::advance() 10 3.909 3.911 3.911 94.30% Castro::subcycle_advance_ctu() 10 3.789 3.797 3.808 91.82% Castro::do_advance_ctu() 10 3.789 3.797 3.808 91.82% Castro::construct_ctu_hydro_source() 10 2.793 2.8 2.812 67.79% check_for_negative_density() 10 0.06144 0.2066 0.5261 12.69% Gravity::make_radial_gravity() 21 0.3627 0.3784 0.4046 9.76% AmrLevel::FillPatch() 41 0.3054 0.3234 0.3388 8.17% FillPatchIterator::Initialize 41 0.2529 0.267 0.274 6.61% Gravity::get_new_grav_vector() 11 0.2641 0.2671 0.2703 6.52% Castro::initialize_do_advance() 10 0.2459 0.2578 0.2669 6.44% Castro::construct_old_gravity() 10 0.2135 0.2242 0.2447 5.90% Gravity::get_old_grav_vector() 10 0.2125 0.2232 0.2437 5.88% Castro::construct_new_gravity() 10 0.2333 0.237 0.2399 5.78% FillPatchIterator::FillFromLevel0() 41 0.175 0.1843 0.1999 4.82% FillPatchSingleLevel 41 0.1748 0.1841 0.1997 4.82% Castro::expand_state() 10 0.1675 0.1821 0.1948 4.70% Amr::init() 1 0.1848 0.1849 0.185 4.46% Amr::initialInit() 1 0.1637 0.164 0.1642 3.96% FabArray::ParallelCopy() 41 0.1302 0.1395 0.1627 3.92% Castro::do_old_sources() 10 0.1458 0.1503 0.1536 3.70% amrex::Copy() 193 0.09842 0.1292 0.1444 3.48% Castro::clean_state() 62 0.1309 0.135 0.1382 3.33% Amr::InitializeInit() 1 0.06813 0.1018 0.1295 3.12% Amr::defBaseLevel() 1 0.06812 0.1018 0.1295 3.12% Castro::initialize_advance() 10 0.09721 0.1083 0.1161 2.80% FabArray::setVal() 143 0.09409 0.1079 0.114 2.75% FabArray::ParallelCopy_finish() 41 0.06024 0.07267 0.1071 2.58% Castro::initData() 1 0.04548 0.07824 0.1068 2.58% Castro::estTimeStep() 21 0.02654 0.06104 0.1033 2.49% Amr::FinalizeInit() 1 0.03457 0.0622 0.09558 2.30% Castro::do_new_sources() 10 0.0723 0.08336 0.08847 2.13% Castro::computeTemp() 63 0.07556 0.07698 0.07922 1.91% FabArray::ParallelCopy_nowait() 41 0.05546 0.06664 0.07112 1.71% Castro::computeInitialDt() 2 0.002447 0.03013 0.06366 1.53% Castro::reset_internal_energy(MultiFab) 63 0.05393 0.05519 0.05747 1.39% Castro::reset_internal_energy(Fab) 1008 0.05357 0.05483 0.0571 1.38% Castro::normalize_species() 62 0.04721 0.05111 0.05462 1.32% StateDataPhysBCFunct::() 41 0.03697 0.04452 0.05067 1.22% StateData::FillBoundary(geom) 41 0.0368 0.04434 0.05049 1.22% Castro::construct_new_source() 50 0.03728 0.04237 0.04468 1.08% Castro::finalize_do_advance() 10 0.01565 0.02256 0.03671 0.89% Castro::construct_new_gravity_source() 10 0.03033 0.03346 0.03499 0.84% Amr::writePlotFile() 2 0.03388 0.03408 0.03423 0.83% Castro::post_init() 1 0.03106 0.03142 0.03168 0.76% Gravity::interpolate_monopole_grav() 21 0.02727 0.02851 0.03023 0.73% FabArray::setDomainBndry() 41 0.0166 0.02343 0.02844 0.69% Castro::apply_source_to_state() 20 0.01674 0.02096 0.02283 0.55% FabArray::Saxpy() 20 0.01668 0.02088 0.02274 0.55% VisMF::Write(FabArray) 2 0.01246 0.01393 0.01875 0.45% Castro::construct_old_source() 50 0.01338 0.01689 0.01814 0.44% Castro::post_timestep() 10 0.01646 0.01712 0.01806 0.44% Castro::construct_old_gravity_source() 10 0.01328 0.01678 0.018 0.43% Castro::Castro() 1 0.01499 0.01593 0.01728 0.42% Castro::check_for_nan() 20 0.01465 0.01542 0.01645 0.40% MultiFab::contains_nan() 20 0.01462 0.01539 0.01641 0.40% Castro::initMFs() 1 0.008566 0.009544 0.01192 0.29% Castro::computeNewDt() 9 0.009597 0.009616 0.00963 0.23% AmrLevel::AmrLevel(dm) 1 0.00705 0.007393 0.008323 0.20% Other 260 0.02667 0.03103 0.03445 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 24 B 35 B 54 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8667 KiB 8670 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6806 KiB 6811 KiB 6813 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4565 KiB 4574 KiB 4588 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 276 KiB 296 KiB 313 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 20 KiB 21 KiB 25 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2824 KiB 2828 KiB 2829 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 223 KiB 232 KiB 248 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 47 KiB 51 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 81 KiB 82 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 65 KiB 69 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.01-29-g69f1ac884c6a) finalized