Initializing AMReX (25.02-4-g779df092b103)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.02-4-g779df092b103) initialized Starting run at 06:21:49 UTC on 2025-02-04. Successfully read inputs file ... Castro git describe: 25.02 AMReX git describe: 25.02-4-g779df092b Microphysics git describe: 25.02 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015323857 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.376315593 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.386690517 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.324264862 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.323033226 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.367357121 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.360387445 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.333019482 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.312591782 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.310628187 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.328079624 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009330042 seconds Ending run at 06:21:53 UTC on 2025-02-04. Run time = 3.603325587 Run time without initialization = 3.438058741 Average number of zones advanced per microsecond: 0.762 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.6014 ... 3.6030 ... 3.6034 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1480 2.2368 2.2750 63.13% Gravity::make_radial_gravity() 21 0.3139 0.3283 0.3532 9.80% check_for_negative_density() 10 0.1623 0.199 0.2925 8.12% amrex::Copy() 193 0.06966 0.09477 0.1038 2.88% Castro::initData() 1 0.03721 0.07038 0.1015 2.82% FabArray::ParallelCopy_finish() 41 0.06896 0.08019 0.09877 2.74% FabArray::setVal() 143 0.07904 0.08322 0.09127 2.53% Castro::estTimeStep() 21 0.02315 0.05865 0.08982 2.49% FabArray::ParallelCopy_nowait() 41 0.03631 0.04808 0.05563 1.54% Castro::normalize_species() 62 0.04601 0.04828 0.05432 1.51% Castro::reset_internal_energy(Fab) 1008 0.04705 0.04858 0.05128 1.42% FillPatchIterator::Initialize 41 0.02783 0.03874 0.0454 1.26% StateData::FillBoundary(geom) 41 0.03445 0.0359 0.03906 1.08% Castro::construct_new_gravity_source() 10 0.02417 0.02718 0.02977 0.83% Gravity::interpolate_monopole_grav() 21 0.02737 0.02768 0.02822 0.78% FabArray::setDomainBndry() 41 0.008709 0.01504 0.02357 0.65% Castro::initialize_do_advance() 10 0.0135 0.01909 0.02183 0.61% Castro::computeTemp() 63 0.01872 0.01913 0.02007 0.56% FabArray::Saxpy() 20 0.01133 0.01415 0.01592 0.44% Castro::initialize_advance() 10 0.01176 0.01355 0.0141 0.39% MultiFab::contains_nan() 20 0.01143 0.01225 0.014 0.39% VisMF::Write(FabArray) 2 0.009378 0.01023 0.01283 0.36% Amr::writePlotFile() 2 0.00865 0.01152 0.01279 0.36% Castro::construct_old_gravity_source() 10 0.008154 0.01076 0.01186 0.33% Castro::initMFs() 1 0.00655 0.006898 0.008539 0.24% Castro::construct_new_source() 50 0.005705 0.006842 0.007217 0.20% main() 1 0.003963 0.005523 0.005921 0.16% Gravity::get_new_grav_vector() 11 0.00275 0.004036 0.004587 0.13% Amr::coarseTimeStep() 10 0.001657 0.002427 0.003632 0.10% Gravity::get_old_grav_vector() 10 0.001371 0.002289 0.002745 0.08% Castro::finalize_do_advance() 10 0.001284 0.00138 0.001892 0.05% AmrLevel::FillPatch() 41 0.001025 0.0012 0.001459 0.04% Amr::timeStep() 10 0.0001335 0.0002118 0.0004463 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002814 0.000311 0.0003522 0.01% Castro::do_advance_ctu() 10 0.0001694 0.0001907 0.0002197 0.01% Castro::clean_state() 62 0.0001503 0.0001741 0.0001965 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001285 0.0001458 0.0001842 0.01% StateDataPhysBCFunct::() 41 0.0001413 0.0001547 0.0001682 0.00% FabArray::ParallelCopy() 41 0.0001006 0.000112 0.0001361 0.00% Castro::do_old_sources() 10 7.667e-05 0.0001099 0.0001268 0.00% Castro::Castro() 1 6.963e-05 8.931e-05 0.0001159 0.00% Castro::construct_old_source() 50 5.145e-05 7.885e-05 0.0001101 0.00% Castro::apply_source_to_state() 20 4.28e-05 5.751e-05 8.845e-05 0.00% Castro::do_new_sources() 10 5.423e-05 7.657e-05 8.502e-05 0.00% Castro::advance() 10 5.492e-05 6.473e-05 8.486e-05 0.00% FillPatchSingleLevel 41 6.897e-05 7.464e-05 8.364e-05 0.00% Amr::FinalizeInit() 1 4.419e-06 1.528e-05 8.081e-05 0.00% Amr::defBaseLevel() 1 4.695e-05 6.505e-05 7.978e-05 0.00% Castro::subcycle_advance_ctu() 10 4.279e-05 5.692e-05 7.284e-05 0.00% Castro::construct_old_gravity() 10 4.157e-05 5.497e-05 6.621e-05 0.00% Castro::construct_new_gravity() 10 3.532e-05 3.791e-05 4.461e-05 0.00% Castro::expand_state() 10 1.633e-05 2.885e-05 4.075e-05 0.00% Castro::check_for_nan() 20 2.458e-05 2.797e-05 3.249e-05 0.00% Castro::post_init() 1 1.481e-05 1.779e-05 2.377e-05 0.00% Castro::post_timestep() 10 1.503e-05 1.824e-05 2.24e-05 0.00% Castro::computeNewDt() 9 9.482e-06 1.085e-05 1.255e-05 0.00% Amr::init() 1 2.207e-06 3.271e-06 9.439e-06 0.00% Amr::InitializeInit() 1 2.6e-06 3.42e-06 5.594e-06 0.00% Castro::computeInitialDt() 2 3.403e-06 4.051e-06 4.658e-06 0.00% Amr::initialInit() 1 1.637e-06 2.172e-06 2.429e-06 0.00% Other 261 0.01633 0.01872 0.02036 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.601 3.603 3.603 100.00% Amr::coarseTimeStep() 10 3.423 3.423 3.423 94.99% Amr::timeStep() 10 3.409 3.41 3.411 94.66% Castro::advance() 10 3.393 3.393 3.394 94.18% Castro::subcycle_advance_ctu() 10 3.293 3.303 3.311 91.88% Castro::do_advance_ctu() 10 3.293 3.303 3.311 91.88% Castro::construct_ctu_hydro_source() 10 2.451 2.458 2.463 68.35% Gravity::make_radial_gravity() 21 0.335 0.3483 0.3654 10.14% check_for_negative_density() 10 0.1623 0.199 0.2925 8.12% AmrLevel::FillPatch() 41 0.2348 0.259 0.2715 7.53% Gravity::get_new_grav_vector() 11 0.2255 0.2272 0.2293 6.36% FillPatchIterator::Initialize 41 0.2082 0.2185 0.2281 6.33% Castro::construct_old_gravity() 10 0.2032 0.2131 0.227 6.30% Castro::initialize_do_advance() 10 0.1865 0.2123 0.2264 6.28% Gravity::get_old_grav_vector() 10 0.2022 0.2122 0.2259 6.27% Castro::construct_new_gravity() 10 0.2022 0.2038 0.2058 5.71% FillPatchIterator::FillFromLevel0() 41 0.1557 0.1648 0.1717 4.76% FillPatchSingleLevel 41 0.1555 0.1646 0.1715 4.76% Castro::expand_state() 10 0.1313 0.1537 0.1677 4.65% Amr::init() 1 0.1648 0.1649 0.1649 4.58% Amr::initialInit() 1 0.1491 0.1493 0.1494 4.15% FabArray::ParallelCopy() 41 0.1206 0.1285 0.1353 3.75% Castro::clean_state() 62 0.1181 0.1219 0.1276 3.54% Amr::InitializeInit() 1 0.05833 0.09144 0.1224 3.40% Amr::defBaseLevel() 1 0.05833 0.09144 0.1224 3.40% Castro::do_old_sources() 10 0.1093 0.1125 0.1169 3.24% Castro::initData() 1 0.04099 0.07433 0.1058 2.94% amrex::Copy() 193 0.06966 0.09477 0.1038 2.88% FabArray::ParallelCopy_finish() 41 0.06896 0.08019 0.09877 2.74% Castro::initialize_advance() 10 0.07859 0.08604 0.09722 2.70% FabArray::setVal() 143 0.07904 0.08322 0.09127 2.53% Amr::FinalizeInit() 1 0.02695 0.05785 0.09098 2.52% Castro::estTimeStep() 21 0.02315 0.05865 0.08982 2.49% Castro::do_new_sources() 10 0.06144 0.06897 0.0732 2.03% Castro::computeTemp() 63 0.06637 0.06802 0.07134 1.98% Castro::computeInitialDt() 2 0.002168 0.03311 0.06622 1.84% FabArray::ParallelCopy_nowait() 41 0.03643 0.04818 0.05573 1.55% Castro::normalize_species() 62 0.04601 0.04828 0.05432 1.51% Castro::reset_internal_energy(MultiFab) 63 0.04735 0.0489 0.05163 1.43% Castro::reset_internal_energy(Fab) 1008 0.04705 0.04858 0.05128 1.42% StateDataPhysBCFunct::() 41 0.0346 0.03606 0.0392 1.09% StateData::FillBoundary(geom) 41 0.03445 0.0359 0.03906 1.08% Castro::construct_new_source() 50 0.02988 0.03402 0.03698 1.03% Castro::construct_new_gravity_source() 10 0.02417 0.02718 0.02977 0.83% Gravity::interpolate_monopole_grav() 21 0.02737 0.02768 0.02822 0.78% Castro::finalize_do_advance() 10 0.01245 0.01764 0.02687 0.75% Amr::writePlotFile() 2 0.0249 0.02501 0.02518 0.70% Castro::post_init() 1 0.02398 0.02418 0.02436 0.68% FabArray::setDomainBndry() 41 0.008709 0.01504 0.02357 0.65% Castro::post_timestep() 10 0.01609 0.01649 0.01693 0.47% Castro::apply_source_to_state() 20 0.01138 0.01421 0.01597 0.44% FabArray::Saxpy() 20 0.01133 0.01415 0.01592 0.44% Castro::check_for_nan() 20 0.01145 0.01228 0.01403 0.39% MultiFab::contains_nan() 20 0.01143 0.01225 0.014 0.39% VisMF::Write(FabArray) 2 0.009378 0.01023 0.01283 0.36% Castro::Castro() 1 0.01028 0.01116 0.01255 0.35% Castro::construct_old_source() 50 0.008205 0.01084 0.01197 0.33% Castro::construct_old_gravity_source() 10 0.008154 0.01076 0.01186 0.33% Castro::computeNewDt() 9 0.009282 0.009301 0.009326 0.26% Castro::initMFs() 1 0.00655 0.006898 0.008539 0.24% Other 261 0.02596 0.03013 0.03259 0.90% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 34 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 13 MiB 13 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8671 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6801 KiB 6807 KiB 6809 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4565 KiB 4580 KiB 4591 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 246 KiB 278 KiB 296 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2821 KiB 2824 KiB 2825 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 236 KiB 246 KiB 258 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 53 KiB 58 KiB 62 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 81 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 72 KiB 75 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.02-4-g779df092b103) finalized