Initializing AMReX (25.02-5-g78bdf0faabc4)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.02-5-g78bdf0faabc4) initialized Starting run at 06:20:24 UTC on 2025-02-05. Successfully read inputs file ... Castro git describe: 25.02 AMReX git describe: 25.02-5-g78bdf0faa Microphysics git describe: 25.02 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016077759 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.348267634 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.342692233 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.339087402 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.345122473 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.358542978 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.339505234 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.340181035 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.34073765 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.34158765 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.344749761 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.027586956 seconds Ending run at 06:20:28 UTC on 2025-02-05. Run time = 3.666861349 Run time without initialization = 3.475153017 Average number of zones advanced per microsecond: 0.754 Average number of zones advanced per microsecond per rank: 0.094 TinyProfiler total time across processes [min...avg...max]: 3.6657 ... 3.6666 ... 3.6669 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3228 2.3850 2.4239 66.10% Gravity::make_radial_gravity() 21 0.2995 0.3056 0.3104 8.47% amrex::Copy() 193 0.1191 0.1211 0.1239 3.38% Castro::initData() 1 0.03749 0.07339 0.1221 3.33% check_for_negative_density() 10 0.01672 0.05578 0.1186 3.23% Castro::estTimeStep() 21 0.02233 0.07347 0.1104 3.01% FabArray::setVal() 143 0.07667 0.08055 0.08836 2.41% FabArray::ParallelCopy_nowait() 41 0.05789 0.06075 0.06788 1.85% FabArray::ParallelCopy_finish() 41 0.04274 0.04913 0.06105 1.66% Castro::reset_internal_energy(Fab) 1008 0.04851 0.05066 0.05367 1.46% FillPatchIterator::Initialize 41 0.04577 0.048 0.05178 1.41% Castro::normalize_species() 62 0.0466 0.04723 0.04812 1.31% StateData::FillBoundary(geom) 41 0.03759 0.04035 0.04604 1.26% Amr::writePlotFile() 2 0.02651 0.02961 0.03055 0.83% Gravity::interpolate_monopole_grav() 21 0.02764 0.0279 0.0284 0.77% Castro::construct_new_gravity_source() 10 0.02737 0.02796 0.02836 0.77% Castro::initialize_do_advance() 10 0.02209 0.02279 0.02341 0.64% Castro::computeTemp() 63 0.0198 0.02008 0.02075 0.57% FabArray::setDomainBndry() 41 0.0167 0.01867 0.02028 0.55% FabArray::Saxpy() 20 0.0183 0.01923 0.0198 0.54% MultiFab::contains_nan() 20 0.01271 0.01329 0.01469 0.40% VisMF::Write(FabArray) 2 0.009782 0.01051 0.01351 0.37% Castro::construct_old_gravity_source() 10 0.01296 0.01321 0.01341 0.37% Castro::initialize_advance() 10 0.01125 0.01134 0.01156 0.32% Castro::construct_new_source() 50 0.008097 0.008428 0.008822 0.24% Castro::initMFs() 1 0.006665 0.007288 0.008429 0.23% Amr::coarseTimeStep() 10 0.002235 0.006233 0.007131 0.19% main() 1 0.005314 0.006214 0.006534 0.18% Gravity::get_new_grav_vector() 11 0.004723 0.004981 0.005278 0.14% Gravity::get_old_grav_vector() 10 0.002419 0.003071 0.003941 0.11% AmrLevel::FillPatch() 41 0.001114 0.001312 0.001527 0.04% Castro::finalize_do_advance() 10 0.001208 0.001271 0.001308 0.04% Amr::timeStep() 10 0.0001645 0.0002123 0.0004219 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003184 0.0003461 0.0004167 0.01% Castro::do_advance_ctu() 10 0.0002252 0.0002511 0.000328 0.01% Castro::Castro() 1 5.812e-05 0.0001079 0.0002871 0.01% Castro::clean_state() 62 0.000172 0.0002002 0.0002335 0.01% StateDataPhysBCFunct::() 41 0.000173 0.0001879 0.000211 0.01% Castro::do_old_sources() 10 0.0001202 0.0001396 0.0001792 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001403 0.0001566 0.0001676 0.00% FabArray::ParallelCopy() 41 0.0001255 0.0001419 0.0001626 0.00% Castro::do_new_sources() 10 9.77e-05 0.0001099 0.0001213 0.00% FillPatchSingleLevel 41 8.815e-05 9.817e-05 0.0001168 0.00% Castro::construct_old_source() 50 9.483e-05 0.0001026 0.0001109 0.00% Castro::construct_old_gravity() 10 5.627e-05 7.427e-05 9.197e-05 0.00% Amr::defBaseLevel() 1 4.673e-05 6.609e-05 8.528e-05 0.00% Amr::FinalizeInit() 1 3.972e-06 1.467e-05 8.148e-05 0.00% Castro::apply_source_to_state() 20 6.312e-05 7.179e-05 8.038e-05 0.00% Castro::subcycle_advance_ctu() 10 5.975e-05 6.848e-05 7.881e-05 0.00% Castro::advance() 10 5.73e-05 6.204e-05 6.974e-05 0.00% Castro::construct_new_gravity() 10 4.042e-05 4.419e-05 5.24e-05 0.00% Castro::check_for_nan() 20 2.989e-05 3.528e-05 4.953e-05 0.00% Castro::expand_state() 10 3.204e-05 3.982e-05 4.725e-05 0.00% Castro::post_timestep() 10 1.875e-05 2.296e-05 4.135e-05 0.00% Castro::post_init() 1 1.449e-05 1.667e-05 2.038e-05 0.00% Castro::computeNewDt() 9 1.117e-05 1.414e-05 1.7e-05 0.00% Amr::InitializeInit() 1 2.753e-06 3.9e-06 6.206e-06 0.00% Castro::computeInitialDt() 2 3.588e-06 4.172e-06 4.83e-06 0.00% Amr::init() 1 2.091e-06 2.486e-06 3.379e-06 0.00% Amr::initialInit() 1 1.587e-06 1.958e-06 2.495e-06 0.00% Other 261 0.01678 0.01962 0.02216 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.666 3.667 3.667 100.00% Amr::coarseTimeStep() 10 3.441 3.441 3.441 93.84% Amr::timeStep() 10 3.423 3.424 3.428 93.49% Castro::advance() 10 3.406 3.406 3.406 92.89% Castro::subcycle_advance_ctu() 10 3.314 3.321 3.326 90.70% Castro::do_advance_ctu() 10 3.314 3.321 3.326 90.70% Castro::construct_ctu_hydro_source() 10 2.46 2.463 2.465 67.23% Gravity::make_radial_gravity() 21 0.3254 0.3349 0.3417 9.32% AmrLevel::FillPatch() 41 0.2596 0.271 0.2828 7.71% Gravity::get_new_grav_vector() 11 0.2319 0.2329 0.2341 6.38% FillPatchIterator::Initialize 41 0.2085 0.2176 0.2277 6.21% Castro::initialize_do_advance() 10 0.2065 0.2154 0.2236 6.10% Castro::construct_old_gravity() 10 0.1989 0.2055 0.2101 5.73% Gravity::get_old_grav_vector() 10 0.1977 0.2045 0.2092 5.71% Castro::construct_new_gravity() 10 0.2059 0.2068 0.2078 5.67% Amr::init() 1 0.1912 0.1913 0.1914 5.22% Amr::initialInit() 1 0.175 0.1751 0.1753 4.78% FillPatchIterator::FillFromLevel0() 41 0.1444 0.1509 0.1614 4.40% FillPatchSingleLevel 41 0.1442 0.1508 0.1612 4.40% Castro::expand_state() 10 0.1421 0.1512 0.1581 4.31% Amr::InitializeInit() 1 0.0581 0.09462 0.145 3.95% Amr::defBaseLevel() 1 0.0581 0.09462 0.145 3.95% Castro::clean_state() 62 0.1226 0.1246 0.1274 3.48% Castro::initData() 1 0.04114 0.07728 0.1261 3.44% Castro::do_old_sources() 10 0.1219 0.1231 0.1259 3.43% amrex::Copy() 193 0.1191 0.1211 0.1239 3.38% FabArray::ParallelCopy() 41 0.1044 0.1101 0.1203 3.28% check_for_negative_density() 10 0.01672 0.05578 0.1186 3.23% Amr::FinalizeInit() 1 0.03028 0.08045 0.1169 3.19% Castro::estTimeStep() 21 0.02233 0.07347 0.1104 3.01% Castro::computeInitialDt() 2 0.002502 0.05297 0.08956 2.44% FabArray::setVal() 143 0.07667 0.08055 0.08836 2.41% Castro::initialize_advance() 10 0.07594 0.08045 0.08777 2.39% Castro::do_new_sources() 10 0.07532 0.07577 0.07666 2.09% Castro::computeTemp() 63 0.06864 0.07109 0.07435 2.03% FabArray::ParallelCopy_nowait() 41 0.05799 0.06086 0.06797 1.85% FabArray::ParallelCopy_finish() 41 0.04274 0.04913 0.06105 1.66% Castro::reset_internal_energy(MultiFab) 63 0.04884 0.05101 0.05408 1.47% Castro::reset_internal_energy(Fab) 1008 0.04851 0.05066 0.05367 1.46% Castro::normalize_species() 62 0.0466 0.04723 0.04812 1.31% StateDataPhysBCFunct::() 41 0.0378 0.04054 0.04622 1.26% StateData::FillBoundary(geom) 41 0.03759 0.04035 0.04604 1.26% Amr::writePlotFile() 2 0.04363 0.04394 0.04412 1.20% Castro::construct_new_source() 50 0.03596 0.03639 0.03677 1.00% Gravity::interpolate_monopole_grav() 21 0.02764 0.0279 0.0284 0.77% Castro::construct_new_gravity_source() 10 0.02737 0.02796 0.02836 0.77% Castro::post_init() 1 0.02682 0.02696 0.02715 0.74% Castro::post_timestep() 10 0.01695 0.01786 0.02204 0.60% FabArray::setDomainBndry() 41 0.0167 0.01867 0.02028 0.55% Castro::apply_source_to_state() 20 0.01837 0.01931 0.01988 0.54% FabArray::Saxpy() 20 0.0183 0.01923 0.0198 0.54% Castro::check_for_nan() 20 0.01276 0.01332 0.01473 0.40% MultiFab::contains_nan() 20 0.01271 0.01329 0.01469 0.40% VisMF::Write(FabArray) 2 0.009782 0.01051 0.01351 0.37% Castro::construct_old_source() 50 0.01307 0.01332 0.01351 0.37% Castro::construct_old_gravity_source() 10 0.01296 0.01321 0.01341 0.37% Castro::finalize_do_advance() 10 0.01176 0.0124 0.01314 0.36% Castro::Castro() 1 0.01027 0.01118 0.01214 0.33% Castro::computeNewDt() 9 0.009368 0.009383 0.009393 0.26% Castro::initMFs() 1 0.006665 0.007288 0.008429 0.23% Other 261 0.02805 0.03164 0.03538 0.96% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 31 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8669 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6755 KiB 6760 KiB 6762 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4516 KiB 4525 KiB 4529 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 264 KiB 278 KiB 291 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 18 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2783 KiB 2786 KiB 2786 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 226 KiB 232 KiB 237 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 42 KiB 46 KiB 52 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 81 KiB 81 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.02-5-g78bdf0faabc4) finalized