Initializing AMReX (25.02-5-g78bdf0faabc4)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.02-5-g78bdf0faabc4) initialized Starting run at 06:20:04 UTC on 2025-02-06. Successfully read inputs file ... Castro git describe: 25.02 AMReX git describe: 25.02-5-g78bdf0faa Microphysics git describe: 25.02 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.022137566 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.426357134 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.378145871 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.352473101 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.38480147 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.320804232 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.334849395 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.333942066 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.353405786 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.372479614 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.352140383 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010876393 seconds Ending run at 06:20:08 UTC on 2025-02-06. Run time = 3.852678626 Run time without initialization = 3.666215994 Average number of zones advanced per microsecond: 0.715 Average number of zones advanced per microsecond per rank: 0.089 TinyProfiler total time across processes [min...avg...max]: 3.8482 ... 3.8498 ... 3.8528 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1902 2.3961 2.5104 65.16% check_for_negative_density() 10 0.08245 0.1999 0.4105 10.65% Gravity::make_radial_gravity() 21 0.3294 0.3358 0.3488 9.05% FabArray::setVal() 143 0.09306 0.1045 0.1101 2.86% amrex::Copy() 193 0.08684 0.09888 0.1039 2.70% Castro::initData() 1 0.03733 0.07332 0.1013 2.63% Castro::estTimeStep() 21 0.02751 0.05848 0.1001 2.60% FabArray::ParallelCopy_finish() 41 0.04517 0.05013 0.06328 1.64% Castro::reset_internal_energy(Fab) 1008 0.04932 0.05153 0.05338 1.39% FabArray::ParallelCopy_nowait() 41 0.04515 0.04978 0.0528 1.37% Amr::writePlotFile() 2 0.04653 0.05034 0.05177 1.34% Castro::normalize_species() 62 0.04613 0.0484 0.05052 1.31% FillPatchIterator::Initialize 41 0.03448 0.03706 0.03914 1.02% StateData::FillBoundary(geom) 41 0.03259 0.03526 0.03814 0.99% Castro::construct_new_gravity_source() 10 0.02975 0.03258 0.03428 0.89% Gravity::interpolate_monopole_grav() 21 0.02716 0.0278 0.0286 0.74% Castro::initialize_do_advance() 10 0.02191 0.02373 0.02678 0.70% FabArray::Saxpy() 20 0.01963 0.02049 0.02134 0.55% Castro::computeTemp() 63 0.01892 0.02002 0.02076 0.54% Castro::initialize_advance() 10 0.01612 0.01707 0.01752 0.45% VisMF::Write(FabArray) 2 0.01179 0.01317 0.01714 0.44% Castro::construct_old_gravity_source() 10 0.01378 0.0156 0.01647 0.43% MultiFab::contains_nan() 20 0.0119 0.01366 0.01496 0.39% FabArray::setDomainBndry() 41 0.01054 0.01278 0.01472 0.38% Castro::initMFs() 1 0.008751 0.01002 0.01217 0.32% main() 1 0.005446 0.007061 0.01004 0.26% Castro::construct_new_source() 50 0.006829 0.008376 0.009249 0.24% Gravity::get_new_grav_vector() 11 0.003608 0.004231 0.004918 0.13% Amr::coarseTimeStep() 10 0.001935 0.002834 0.004167 0.11% Gravity::get_old_grav_vector() 10 0.001776 0.002206 0.002471 0.06% Castro::finalize_do_advance() 10 0.0006403 0.001241 0.001761 0.05% AmrLevel::FillPatch() 41 0.001106 0.001196 0.00142 0.04% Amr::timeStep() 10 0.0001384 0.0002325 0.000596 0.02% Castro::reset_internal_energy(MultiFab) 63 0.000325 0.0003361 0.0003461 0.01% Castro::do_advance_ctu() 10 0.000195 0.000226 0.0002601 0.01% Castro::clean_state() 62 0.0001813 0.0002006 0.0002183 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001223 0.0001477 0.0001887 0.00% StateDataPhysBCFunct::() 41 0.0001286 0.0001447 0.0001579 0.00% Castro::do_old_sources() 10 0.0001119 0.0001334 0.0001518 0.00% Castro::Castro() 1 6.344e-05 9.858e-05 0.000145 0.00% Castro::construct_old_source() 50 9.913e-05 0.0001126 0.0001385 0.00% FabArray::ParallelCopy() 41 9.572e-05 0.0001136 0.000133 0.00% Castro::subcycle_advance_ctu() 10 6.232e-05 7.484e-05 0.0001025 0.00% Amr::FinalizeInit() 1 5.195e-06 1.885e-05 0.0001014 0.00% Castro::do_new_sources() 10 6.91e-05 7.931e-05 9.197e-05 0.00% FillPatchSingleLevel 41 7.143e-05 7.951e-05 8.934e-05 0.00% Castro::apply_source_to_state() 20 6.721e-05 7.66e-05 8.526e-05 0.00% Amr::defBaseLevel() 1 5.59e-05 7.172e-05 7.92e-05 0.00% Castro::advance() 10 5.247e-05 6.327e-05 7.451e-05 0.00% Castro::construct_old_gravity() 10 4.025e-05 4.751e-05 6.303e-05 0.00% Castro::construct_new_gravity() 10 3.368e-05 4.157e-05 5.279e-05 0.00% Castro::post_timestep() 10 1.673e-05 2.177e-05 3.96e-05 0.00% Castro::check_for_nan() 20 2.494e-05 3.159e-05 3.814e-05 0.00% Castro::expand_state() 10 2.457e-05 3.024e-05 3.566e-05 0.00% Amr::InitializeInit() 1 2.624e-06 6.228e-06 2.745e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.289e-06 1.249e-05 2.678e-05 0.00% Castro::post_init() 1 1.549e-05 1.831e-05 2.641e-05 0.00% Castro::computeNewDt() 9 9.866e-06 1.104e-05 1.214e-05 0.00% Amr::init() 1 2.239e-06 3.528e-06 7.704e-06 0.00% Castro::computeInitialDt() 2 4.335e-06 4.907e-06 5.339e-06 0.00% Amr::initialInit() 1 1.752e-06 2.276e-06 3.071e-06 0.00% Other 260 0.02105 0.02372 0.02582 0.67% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.848 3.85 3.853 100.00% Amr::coarseTimeStep() 10 3.61 3.61 3.61 93.70% Amr::timeStep() 10 3.594 3.595 3.596 93.34% Castro::advance() 10 3.577 3.579 3.58 92.91% Castro::subcycle_advance_ctu() 10 3.463 3.468 3.476 90.21% Castro::do_advance_ctu() 10 3.463 3.467 3.476 90.21% Castro::construct_ctu_hydro_source() 10 2.617 2.62 2.624 68.11% check_for_negative_density() 10 0.08245 0.1999 0.4105 10.65% Gravity::make_radial_gravity() 21 0.3495 0.3559 0.3665 9.51% Gravity::get_new_grav_vector() 11 0.236 0.237 0.2381 6.18% AmrLevel::FillPatch() 41 0.2209 0.2257 0.2293 5.95% Castro::construct_old_gravity() 10 0.2076 0.2117 0.2202 5.71% Gravity::get_old_grav_vector() 10 0.2067 0.2109 0.2195 5.70% Castro::construct_new_gravity() 10 0.2049 0.2064 0.2076 5.39% FillPatchIterator::Initialize 41 0.18 0.1856 0.1924 4.99% Castro::initialize_do_advance() 10 0.1866 0.1883 0.1906 4.95% Amr::init() 1 0.186 0.1861 0.1861 4.83% Amr::initialInit() 1 0.1636 0.1641 0.1644 4.27% FillPatchIterator::FillFromLevel0() 41 0.1313 0.1358 0.1416 3.68% FillPatchSingleLevel 41 0.1311 0.1356 0.1415 3.67% Castro::clean_state() 62 0.1229 0.1267 0.1309 3.40% Amr::InitializeInit() 1 0.06495 0.1021 0.1295 3.36% Amr::defBaseLevel() 1 0.06495 0.1021 0.1295 3.36% Castro::expand_state() 10 0.1208 0.1226 0.1248 3.24% Castro::do_old_sources() 10 0.1183 0.1212 0.1242 3.22% Castro::initialize_advance() 10 0.09739 0.1062 0.1108 2.88% FabArray::setVal() 143 0.09306 0.1045 0.1101 2.86% FabArray::ParallelCopy() 41 0.09432 0.1001 0.1087 2.82% Castro::initData() 1 0.04237 0.07809 0.1065 2.77% amrex::Copy() 193 0.08684 0.09888 0.1039 2.70% Castro::estTimeStep() 21 0.02751 0.05848 0.1001 2.60% Amr::FinalizeInit() 1 0.03459 0.06206 0.09942 2.58% Castro::do_new_sources() 10 0.07339 0.08114 0.08501 2.21% Castro::computeTemp() 63 0.06858 0.07189 0.07425 1.93% Amr::writePlotFile() 2 0.06812 0.06842 0.06879 1.79% Castro::computeInitialDt() 2 0.003423 0.03086 0.068 1.76% FabArray::ParallelCopy_finish() 41 0.04517 0.05013 0.06328 1.64% Castro::reset_internal_energy(MultiFab) 63 0.04965 0.05187 0.0537 1.39% Castro::reset_internal_energy(Fab) 1008 0.04932 0.05153 0.05338 1.39% FabArray::ParallelCopy_nowait() 41 0.04527 0.04989 0.0529 1.37% Castro::normalize_species() 62 0.04613 0.0484 0.05052 1.31% Castro::construct_new_source() 50 0.03704 0.04095 0.04349 1.13% StateDataPhysBCFunct::() 41 0.03274 0.03541 0.03828 0.99% StateData::FillBoundary(geom) 41 0.03259 0.03526 0.03814 0.99% Castro::construct_new_gravity_source() 10 0.02975 0.03258 0.03428 0.89% Castro::post_init() 1 0.03127 0.03175 0.032 0.83% Castro::finalize_do_advance() 10 0.01519 0.01943 0.02863 0.74% Gravity::interpolate_monopole_grav() 21 0.02716 0.0278 0.0286 0.74% Castro::apply_source_to_state() 20 0.01972 0.02057 0.02142 0.56% FabArray::Saxpy() 20 0.01963 0.02049 0.02134 0.55% Castro::Castro() 1 0.01486 0.01608 0.01797 0.47% Castro::post_timestep() 10 0.01588 0.01646 0.01744 0.45% VisMF::Write(FabArray) 2 0.01179 0.01317 0.01714 0.44% Castro::construct_old_source() 50 0.01392 0.01571 0.01658 0.43% Castro::construct_old_gravity_source() 10 0.01378 0.0156 0.01647 0.43% Castro::check_for_nan() 20 0.01193 0.01369 0.015 0.39% MultiFab::contains_nan() 20 0.0119 0.01366 0.01496 0.39% FabArray::setDomainBndry() 41 0.01054 0.01278 0.01472 0.38% Castro::initMFs() 1 0.008751 0.01002 0.01217 0.32% Castro::computeNewDt() 9 0.009437 0.009454 0.009468 0.25% AmrLevel::AmrLevel(dm) 1 0.007319 0.007624 0.008271 0.21% Other 260 0.02667 0.03048 0.0334 0.87% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 32 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8641 KiB 8655 KiB 8659 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6766 KiB 6776 KiB 6778 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7124 KiB 7133 KiB 7135 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4491 KiB 4496 KiB 4508 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 213 KiB 218 KiB 220 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 20 KiB 21 KiB 26 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2780 KiB 2785 KiB 2787 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 231 KiB 235 KiB 242 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 38 KiB 42 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2023 KiB 2026 KiB 2027 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.02-5-g78bdf0faabc4) finalized