Initializing AMReX (25.02-6-g75528044eb48)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.02-6-g75528044eb48) initialized Starting run at 06:19:54 UTC on 2025-02-07. Successfully read inputs file ... Castro git describe: 25.02 AMReX git describe: 25.02-6-g75528044e Microphysics git describe: 25.02 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016707741 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.370274151 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.356290796 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.364711747 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.36257067 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.350197025 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.358220144 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.374117888 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.356079746 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.335980931 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.379736889 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.011254107 seconds Ending run at 06:19:58 UTC on 2025-02-07. Run time = 3.809272967 Run time without initialization = 3.627819502 Average number of zones advanced per microsecond: 0.723 Average number of zones advanced per microsecond per rank: 0.090 TinyProfiler total time across processes [min...avg...max]: 3.8066 ... 3.8085 ... 3.8093 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2994 2.3668 2.4166 63.44% Gravity::make_radial_gravity() 21 0.3418 0.3525 0.3615 9.49% check_for_negative_density() 10 0.1143 0.1669 0.239 6.27% amrex::Copy() 193 0.1059 0.1104 0.1155 3.03% Castro::estTimeStep() 21 0.03399 0.07169 0.1133 2.97% Castro::initData() 1 0.03832 0.07584 0.1046 2.75% FabArray::setVal() 143 0.08762 0.09276 0.09827 2.58% FabArray::ParallelCopy_nowait() 41 0.05622 0.05811 0.06013 1.58% FabArray::ParallelCopy_finish() 41 0.05029 0.05433 0.05916 1.55% Castro::reset_internal_energy(Fab) 1008 0.04998 0.05201 0.05582 1.47% Castro::normalize_species() 62 0.04705 0.04888 0.05126 1.35% FillPatchIterator::Initialize 41 0.04771 0.04875 0.0501 1.32% StateData::FillBoundary(geom) 41 0.03742 0.04127 0.04412 1.16% Castro::construct_new_gravity_source() 10 0.02942 0.03078 0.03462 0.91% Gravity::interpolate_monopole_grav() 21 0.02765 0.02821 0.02898 0.76% Castro::initialize_do_advance() 10 0.0251 0.02634 0.02769 0.73% Castro::computeTemp() 63 0.01965 0.02045 0.02159 0.57% FabArray::setDomainBndry() 41 0.01678 0.01896 0.02116 0.56% FabArray::Saxpy() 20 0.01677 0.01835 0.01951 0.51% MultiFab::contains_nan() 20 0.01244 0.01378 0.01485 0.39% Amr::writePlotFile() 2 0.01002 0.01336 0.01441 0.38% VisMF::Write(FabArray) 2 0.009903 0.01105 0.01428 0.37% Castro::construct_old_gravity_source() 10 0.0126 0.01348 0.01374 0.36% Castro::initialize_advance() 10 0.01244 0.01279 0.01311 0.34% StateData::define() 4 0.005645 0.006651 0.01056 0.28% Castro::initMFs() 1 0.007877 0.008745 0.01017 0.27% Castro::construct_new_source() 50 0.007352 0.007605 0.007962 0.21% main() 1 0.005108 0.007026 0.007848 0.21% Gravity::get_new_grav_vector() 11 0.004565 0.005094 0.005637 0.15% Amr::coarseTimeStep() 10 0.002489 0.003383 0.004179 0.11% Gravity::get_old_grav_vector() 10 0.002542 0.003079 0.003605 0.09% AmrLevel::FillPatch() 41 0.0009921 0.001272 0.00213 0.06% Castro::finalize_do_advance() 10 0.0009766 0.001078 0.001136 0.03% Amr::timeStep() 10 0.0001692 0.0002331 0.0005193 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003272 0.0003499 0.0003872 0.01% Castro::do_advance_ctu() 10 0.0001859 0.0002212 0.0002712 0.01% Castro::clean_state() 62 0.0001723 0.0001938 0.0002131 0.01% Amr::defBaseLevel() 1 4.886e-05 7.341e-05 0.0001698 0.00% StateDataPhysBCFunct::() 41 0.0001453 0.0001554 0.0001679 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001383 0.000148 0.0001637 0.00% Castro::do_old_sources() 10 0.0001081 0.00013 0.0001481 0.00% FabArray::ParallelCopy() 41 0.0001206 0.0001298 0.0001419 0.00% Castro::construct_old_source() 50 7.87e-05 9.89e-05 0.0001222 0.00% FillPatchSingleLevel 41 7.417e-05 8.997e-05 0.0001 0.00% Castro::do_new_sources() 10 7.343e-05 8.773e-05 9.618e-05 0.00% Castro::advance() 10 5.223e-05 6.695e-05 9.214e-05 0.00% Castro::subcycle_advance_ctu() 10 5.504e-05 6.884e-05 8.889e-05 0.00% Amr::FinalizeInit() 1 4.209e-06 1.693e-05 8.153e-05 0.00% Castro::apply_source_to_state() 20 5.971e-05 6.605e-05 7.434e-05 0.00% Castro::Castro() 1 4.822e-05 5.689e-05 6.452e-05 0.00% Castro::construct_old_gravity() 10 4.748e-05 5.185e-05 5.849e-05 0.00% Castro::construct_new_gravity() 10 3.593e-05 4.183e-05 5.32e-05 0.00% Castro::expand_state() 10 3.177e-05 3.768e-05 4.625e-05 0.00% Castro::check_for_nan() 20 2.91e-05 3.378e-05 4.439e-05 0.00% Castro::post_timestep() 10 1.792e-05 2.176e-05 3.075e-05 0.00% Castro::post_init() 1 1.528e-05 1.813e-05 2.339e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.74e-06 1.281e-05 2.256e-05 0.00% Amr::InitializeInit() 1 2.537e-06 3.803e-06 6.741e-06 0.00% Castro::computeInitialDt() 2 3.819e-06 4.419e-06 4.964e-06 0.00% Amr::init() 1 2.22e-06 2.535e-06 2.981e-06 0.00% Amr::initialInit() 1 1.735e-06 2.154e-06 2.644e-06 0.00% Other 265 0.01202 0.01436 0.01683 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.807 3.809 3.809 100.00% Amr::coarseTimeStep() 10 3.609 3.609 3.609 94.74% Amr::timeStep() 10 3.593 3.594 3.595 94.38% Castro::advance() 10 3.577 3.577 3.578 93.93% Castro::subcycle_advance_ctu() 10 3.477 3.48 3.482 91.40% Castro::do_advance_ctu() 10 3.477 3.48 3.482 91.40% Castro::construct_ctu_hydro_source() 10 2.554 2.558 2.562 67.25% Gravity::make_radial_gravity() 21 0.3666 0.3768 0.3874 10.17% AmrLevel::FillPatch() 41 0.2597 0.2699 0.275 7.22% Gravity::get_new_grav_vector() 11 0.2428 0.2451 0.2465 6.47% Castro::construct_old_gravity() 10 0.2271 0.2342 0.2408 6.32% Gravity::get_old_grav_vector() 10 0.2263 0.2333 0.2401 6.30% check_for_negative_density() 10 0.1143 0.1669 0.239 6.27% Castro::initialize_do_advance() 10 0.212 0.2188 0.2263 5.94% FillPatchIterator::Initialize 41 0.2163 0.2221 0.2255 5.92% Castro::construct_new_gravity() 10 0.2164 0.2186 0.2198 5.77% Amr::init() 1 0.1808 0.181 0.1811 4.75% Amr::initialInit() 1 0.1634 0.1639 0.1641 4.31% FillPatchIterator::FillFromLevel0() 41 0.1507 0.1543 0.1582 4.15% FillPatchSingleLevel 41 0.1505 0.1542 0.158 4.15% Castro::expand_state() 10 0.1427 0.1487 0.1548 4.06% Castro::clean_state() 62 0.124 0.1281 0.1352 3.55% Amr::InitializeInit() 1 0.06171 0.09884 0.1337 3.51% Amr::defBaseLevel() 1 0.06171 0.09884 0.1337 3.51% Castro::do_old_sources() 10 0.1251 0.1271 0.1287 3.38% FabArray::ParallelCopy() 41 0.1078 0.1127 0.1172 3.08% amrex::Copy() 193 0.1059 0.1104 0.1155 3.03% Castro::estTimeStep() 21 0.03399 0.07169 0.1133 2.97% Castro::initData() 1 0.04182 0.07968 0.1082 2.84% Amr::FinalizeInit() 1 0.0302 0.06505 0.1022 2.68% FabArray::setVal() 143 0.08762 0.09276 0.09827 2.58% Castro::initialize_advance() 10 0.09038 0.0915 0.09473 2.49% Castro::do_new_sources() 10 0.07555 0.07931 0.082 2.15% Castro::computeTemp() 63 0.07025 0.07281 0.07777 2.04% Castro::computeInitialDt() 2 0.002333 0.0371 0.07424 1.95% FabArray::ParallelCopy_nowait() 41 0.05633 0.05822 0.06023 1.58% FabArray::ParallelCopy_finish() 41 0.05029 0.05433 0.05916 1.55% Castro::reset_internal_energy(MultiFab) 63 0.05032 0.05236 0.05619 1.48% Castro::reset_internal_energy(Fab) 1008 0.04998 0.05201 0.05582 1.47% Castro::normalize_species() 62 0.04705 0.04888 0.05126 1.35% StateDataPhysBCFunct::() 41 0.03758 0.04142 0.04427 1.16% StateData::FillBoundary(geom) 41 0.03742 0.04127 0.04412 1.16% Castro::construct_new_source() 50 0.03681 0.03838 0.04225 1.11% Castro::construct_new_gravity_source() 10 0.02942 0.03078 0.03462 0.91% Castro::finalize_do_advance() 10 0.02169 0.02576 0.03065 0.80% Amr::writePlotFile() 2 0.02822 0.02847 0.02907 0.76% Gravity::interpolate_monopole_grav() 21 0.02765 0.02821 0.02898 0.76% Castro::post_init() 1 0.02697 0.02744 0.02769 0.73% FabArray::setDomainBndry() 41 0.01678 0.01896 0.02116 0.56% Castro::apply_source_to_state() 20 0.01683 0.01842 0.01958 0.51% FabArray::Saxpy() 20 0.01677 0.01835 0.01951 0.51% Castro::post_timestep() 10 0.0163 0.01681 0.01736 0.46% Castro::check_for_nan() 20 0.01248 0.01381 0.01489 0.39% MultiFab::contains_nan() 20 0.01244 0.01378 0.01485 0.39% Castro::Castro() 1 0.01077 0.01217 0.0145 0.38% VisMF::Write(FabArray) 2 0.009903 0.01105 0.01428 0.37% Castro::construct_old_source() 50 0.01268 0.01358 0.01385 0.36% Castro::construct_old_gravity_source() 10 0.0126 0.01348 0.01374 0.36% AmrLevel::AmrLevel(dm) 1 0.005654 0.006664 0.01058 0.28% StateData::define() 4 0.005645 0.006651 0.01056 0.28% Castro::initMFs() 1 0.007877 0.008745 0.01017 0.27% Other 265 0.02818 0.03141 0.0352 0.92% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 37 B 82 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8651 KiB 8664 KiB 8670 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6784 KiB 6792 KiB 6793 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7128 KiB 7138 KiB 7140 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4559 KiB 4565 KiB 4567 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 256 KiB 266 KiB 273 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 18 KiB 22 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2812 KiB 2816 KiB 2817 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 245 KiB 252 KiB 259 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 42 KiB 45 KiB 47 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 81 KiB 82 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 76 KiB 78 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.02-6-g75528044eb48) finalized