Initializing AMReX (25.02-7-g823ec7fc00a9)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.02-7-g823ec7fc00a9) initialized Starting run at 06:39:36 UTC on 2025-02-10. Successfully read inputs file ... Castro git describe: 25.02 AMReX git describe: 25.02-7-g823ec7fc0 Microphysics git describe: 25.02-7-g8c5e0609 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016488132 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.34856328 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.314524502 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.336759474 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.318696846 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.356744476 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.296426806 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.290159967 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.289640912 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.290451832 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.289558476 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007577379 seconds Ending run at 06:39:39 UTC on 2025-02-10. Run time = 3.358089446 Run time without initialization = 3.144436983 Average number of zones advanced per microsecond: 0.834 Average number of zones advanced per microsecond per rank: 0.104 TinyProfiler total time across processes [min...avg...max]: 3.3575 ... 3.3579 ... 3.3582 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0868 2.1415 2.1967 65.41% Gravity::make_radial_gravity() 21 0.3055 0.3163 0.3317 9.88% check_for_negative_density() 10 0.04403 0.09916 0.1557 4.64% Castro::initData() 1 0.04484 0.08408 0.1308 3.89% Castro::estTimeStep() 21 0.02816 0.07744 0.1189 3.54% FabArray::ParallelCopy_finish() 41 0.0563 0.07048 0.0998 2.97% amrex::Copy() 193 0.06994 0.08064 0.09347 2.78% FabArray::setVal() 143 0.05615 0.06726 0.079 2.35% Castro::reset_internal_energy(Fab) 1008 0.04618 0.04798 0.054 1.61% Castro::normalize_species() 62 0.04559 0.04701 0.04857 1.45% FabArray::ParallelCopy_nowait() 41 0.03599 0.04034 0.04223 1.26% StateData::FillBoundary(geom) 41 0.02996 0.03244 0.03544 1.06% FillPatchIterator::Initialize 41 0.02857 0.03282 0.03509 1.04% Gravity::interpolate_monopole_grav() 21 0.02698 0.02793 0.02901 0.86% Castro::construct_new_gravity_source() 10 0.0226 0.02385 0.02587 0.77% Castro::initialize_do_advance() 10 0.01184 0.01649 0.02003 0.60% Castro::computeTemp() 63 0.0178 0.01865 0.01907 0.57% VisMF::Write(FabArray) 2 0.009701 0.01051 0.01323 0.39% Castro::initialize_advance() 10 0.005428 0.01042 0.01306 0.39% FabArray::setDomainBndry() 41 0.008036 0.0105 0.01304 0.39% FabArray::Saxpy() 20 0.01029 0.01217 0.01297 0.39% Amr::writePlotFile() 2 0.008259 0.01156 0.01251 0.37% MultiFab::contains_nan() 20 0.01045 0.01123 0.01205 0.36% Amr::coarseTimeStep() 10 0.002038 0.009917 0.01146 0.34% Castro::initMFs() 1 0.007345 0.008172 0.01076 0.32% Castro::construct_old_gravity_source() 10 0.006394 0.008687 0.00932 0.28% Gravity::get_old_grav_vector() 10 0.001657 0.002635 0.007156 0.21% Castro::construct_new_source() 50 0.005743 0.006182 0.006461 0.19% main() 1 0.003645 0.004028 0.004287 0.13% Gravity::get_new_grav_vector() 11 0.002926 0.003629 0.004028 0.12% Castro::finalize_do_advance() 10 0.0005703 0.001033 0.00118 0.04% AmrLevel::FillPatch() 41 0.0008005 0.0009844 0.001091 0.03% Amr::timeStep() 10 0.0001395 0.0001989 0.0004137 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002826 0.0003125 0.0003555 0.01% Castro::finalize_advance() 10 0.0001014 0.00014 0.0002853 0.01% Castro::do_advance_ctu() 10 0.0001571 0.000183 0.0002098 0.01% Castro::clean_state() 62 0.000151 0.0001632 0.0001845 0.01% StateDataPhysBCFunct::() 41 0.0001165 0.000132 0.0001583 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001156 0.0001262 0.0001378 0.00% FabArray::ParallelCopy() 41 8.373e-05 9.598e-05 0.0001189 0.00% Castro::do_old_sources() 10 8.145e-05 9.268e-05 0.0001129 0.00% Amr::defBaseLevel() 1 4.841e-05 6.564e-05 8.816e-05 0.00% Castro::subcycle_advance_ctu() 10 4.15e-05 5.397e-05 8.528e-05 0.00% Castro::Castro() 1 5.748e-05 7.154e-05 8.462e-05 0.00% Castro::construct_old_source() 50 5.863e-05 6.821e-05 7.781e-05 0.00% Amr::FinalizeInit() 1 4.567e-06 1.399e-05 7.519e-05 0.00% FillPatchSingleLevel 41 6.094e-05 6.582e-05 7.486e-05 0.00% Castro::do_new_sources() 10 5.718e-05 6.349e-05 7.446e-05 0.00% Castro::advance() 10 4.338e-05 5.121e-05 6.694e-05 0.00% Castro::construct_old_gravity() 10 3.619e-05 4.404e-05 5.535e-05 0.00% Castro::apply_source_to_state() 20 4.331e-05 4.836e-05 5.456e-05 0.00% Castro::construct_new_gravity() 10 3.186e-05 3.658e-05 4.105e-05 0.00% Castro::expand_state() 10 2.196e-05 2.533e-05 3.135e-05 0.00% Castro::check_for_nan() 20 2.507e-05 2.65e-05 2.799e-05 0.00% Castro::post_init() 1 1.721e-05 1.887e-05 2.109e-05 0.00% Castro::post_timestep() 10 1.344e-05 1.705e-05 1.905e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.269e-06 1.242e-05 1.763e-05 0.00% Castro::computeNewDt() 9 9.337e-06 1.045e-05 1.199e-05 0.00% Amr::InitializeInit() 1 3.052e-06 3.78e-06 6.158e-06 0.00% Castro::computeInitialDt() 2 3.646e-06 4.47e-06 4.972e-06 0.00% Amr::init() 1 2.063e-06 2.698e-06 3.285e-06 0.00% Amr::initialInit() 1 1.65e-06 2.131e-06 2.443e-06 0.00% Other 250 0.01722 0.01971 0.02312 0.69% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.358 3.358 3.358 100.00% Amr::coarseTimeStep() 10 3.133 3.133 3.133 93.28% Amr::timeStep() 10 3.111 3.112 3.12 92.91% Castro::advance() 10 3.094 3.096 3.101 92.33% Castro::subcycle_advance_ctu() 10 3.014 3.022 3.037 90.44% Castro::do_advance_ctu() 10 3.014 3.022 3.037 90.44% Castro::construct_ctu_hydro_source() 10 2.26 2.262 2.265 67.45% Gravity::make_radial_gravity() 21 0.3221 0.3324 0.3448 10.27% AmrLevel::FillPatch() 41 0.1953 0.2178 0.2343 6.98% Gravity::get_new_grav_vector() 11 0.2172 0.2194 0.2208 6.58% Amr::init() 1 0.2131 0.2132 0.2133 6.35% Castro::construct_old_gravity() 10 0.1903 0.2005 0.2101 6.26% Gravity::get_old_grav_vector() 10 0.1895 0.1998 0.2094 6.24% FillPatchIterator::Initialize 41 0.1674 0.1871 0.2058 6.13% Amr::initialInit() 1 0.1955 0.1961 0.1967 5.86% Castro::initialize_do_advance() 10 0.1622 0.1771 0.1872 5.57% Castro::construct_new_gravity() 10 0.1847 0.1856 0.1862 5.54% FillPatchIterator::FillFromLevel0() 41 0.1277 0.1438 0.168 5.00% FillPatchSingleLevel 41 0.1276 0.1436 0.1679 5.00% Amr::InitializeInit() 1 0.06746 0.1078 0.1579 4.70% Amr::defBaseLevel() 1 0.06746 0.1078 0.1579 4.70% check_for_negative_density() 10 0.04403 0.09916 0.1557 4.64% FabArray::ParallelCopy() 41 0.09699 0.111 0.136 4.05% Castro::expand_state() 10 0.1045 0.1233 0.135 4.02% Castro::initData() 1 0.04925 0.08836 0.1345 4.01% Amr::FinalizeInit() 1 0.03767 0.08832 0.1282 3.82% Castro::clean_state() 62 0.1149 0.1192 0.1243 3.70% Castro::estTimeStep() 21 0.02816 0.07744 0.1189 3.54% Castro::do_old_sources() 10 0.09293 0.09899 0.103 3.07% FabArray::ParallelCopy_finish() 41 0.0563 0.07048 0.0998 2.97% amrex::Copy() 193 0.06994 0.08064 0.09347 2.78% Castro::computeInitialDt() 2 0.00251 0.0527 0.09305 2.77% FabArray::setVal() 143 0.05615 0.06726 0.079 2.35% Castro::initialize_advance() 10 0.05397 0.06949 0.07743 2.31% Castro::computeTemp() 63 0.06431 0.06693 0.07312 2.18% Castro::do_new_sources() 10 0.05785 0.06327 0.06748 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04651 0.04829 0.05435 1.62% Castro::reset_internal_energy(Fab) 1008 0.04618 0.04798 0.054 1.61% Castro::normalize_species() 62 0.04559 0.04701 0.04857 1.45% FabArray::ParallelCopy_nowait() 41 0.03608 0.04043 0.04232 1.26% Castro::post_init() 1 0.03426 0.0349 0.03574 1.06% StateDataPhysBCFunct::() 41 0.03008 0.03257 0.0356 1.06% StateData::FillBoundary(geom) 41 0.02996 0.03244 0.03544 1.06% Castro::construct_new_source() 50 0.02835 0.03004 0.03233 0.96% Gravity::interpolate_monopole_grav() 21 0.02698 0.02793 0.02901 0.86% Castro::construct_new_gravity_source() 10 0.0226 0.02385 0.02587 0.77% Amr::writePlotFile() 2 0.02423 0.02481 0.02539 0.76% Castro::finalize_do_advance() 10 0.01292 0.01655 0.02145 0.64% Castro::post_timestep() 10 0.01582 0.01654 0.01916 0.57% Castro::Castro() 1 0.01159 0.01238 0.01471 0.44% VisMF::Write(FabArray) 2 0.009701 0.01051 0.01323 0.39% FabArray::setDomainBndry() 41 0.008036 0.0105 0.01304 0.39% Castro::apply_source_to_state() 20 0.01034 0.01222 0.01302 0.39% FabArray::Saxpy() 20 0.01029 0.01217 0.01297 0.39% Castro::check_for_nan() 20 0.01047 0.01126 0.01208 0.36% MultiFab::contains_nan() 20 0.01045 0.01123 0.01205 0.36% Castro::initMFs() 1 0.007345 0.008172 0.01076 0.32% Castro::construct_old_source() 50 0.006452 0.008756 0.009391 0.28% Castro::construct_old_gravity_source() 10 0.006394 0.008687 0.00932 0.28% Castro::computeNewDt() 9 0.00921 0.009227 0.009242 0.28% Castro::finalize_advance() 10 0.003085 0.003957 0.008857 0.26% AmrLevel::AmrLevel(dm) 1 0.006197 0.006816 0.008523 0.25% Other 250 0.01912 0.02197 0.02561 0.76% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 42 B 52 B 68 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8666 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6675 KiB 6681 KiB 6685 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4479 KiB 4496 KiB 4519 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 215 KiB 246 KiB 265 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 18 KiB 22 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2764 KiB 2764 KiB 2766 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 244 KiB 252 KiB 261 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 42 KiB 51 KiB 66 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 83 KiB 83 KiB 84 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 72 KiB 76 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.02-7-g823ec7fc00a9) finalized