Initializing AMReX (25.02-9-g198da4879a63)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.02-9-g198da4879a63) initialized Starting run at 06:19:57 UTC on 2025-02-11. Successfully read inputs file ... Castro git describe: 25.02 AMReX git describe: 25.02-9-g198da4879 Microphysics git describe: 25.02-7-g8c5e0609 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.018990573 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.360584826 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.353999973 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.350952447 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.390799822 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.387136769 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.328721339 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.30456222 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.300352868 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.302255667 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.303798496 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012896118 seconds Ending run at 06:20:01 UTC on 2025-02-11. Run time = 3.600564437 Run time without initialization = 3.403039224 Average number of zones advanced per microsecond: 0.770 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.5985 ... 3.5996 ... 3.6006 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1904 2.2198 2.2955 63.75% Gravity::make_radial_gravity() 21 0.3107 0.3254 0.3339 9.27% check_for_negative_density() 10 0.1216 0.2 0.2289 6.36% Castro::estTimeStep() 21 0.03938 0.08873 0.1295 3.60% Castro::initData() 1 0.03728 0.07497 0.1247 3.46% FabArray::ParallelCopy_finish() 41 0.0741 0.08397 0.1022 2.84% amrex::Copy() 193 0.07856 0.08594 0.09274 2.58% FabArray::setVal() 143 0.06685 0.07192 0.08432 2.34% Castro::normalize_species() 62 0.04566 0.04987 0.05418 1.50% Castro::reset_internal_energy(Fab) 1008 0.04631 0.04954 0.05315 1.48% FabArray::ParallelCopy_nowait() 41 0.03963 0.04479 0.04818 1.34% FillPatchIterator::Initialize 41 0.03102 0.03652 0.03914 1.09% StateData::FillBoundary(geom) 41 0.03272 0.03516 0.03825 1.06% Gravity::interpolate_monopole_grav() 21 0.02656 0.02747 0.02851 0.79% Castro::construct_new_gravity_source() 10 0.02409 0.0251 0.02658 0.74% Castro::initialize_do_advance() 10 0.01969 0.02058 0.02196 0.61% Castro::computeTemp() 63 0.0188 0.01968 0.02162 0.60% VisMF::Write(FabArray) 2 0.009096 0.01144 0.02122 0.59% Amr::writePlotFile() 2 0.008215 0.01763 0.02044 0.57% Castro::initialize_advance() 10 0.01047 0.01219 0.01785 0.50% FabArray::setDomainBndry() 41 0.01044 0.01325 0.01557 0.43% MultiFab::contains_nan() 20 0.01107 0.01191 0.01444 0.40% FabArray::Saxpy() 20 0.01119 0.01242 0.01363 0.38% Castro::construct_old_gravity_source() 10 0.007632 0.009277 0.01005 0.28% Castro::initMFs() 1 0.00645 0.007052 0.008867 0.25% Castro::construct_new_source() 50 0.005544 0.006074 0.006616 0.18% main() 1 0.004102 0.005205 0.006253 0.17% Gravity::get_new_grav_vector() 11 0.003772 0.004667 0.005494 0.15% Amr::coarseTimeStep() 10 0.002309 0.003683 0.005054 0.14% Gravity::get_old_grav_vector() 10 0.002014 0.002463 0.003008 0.08% Castro::finalize_do_advance() 10 0.001131 0.001171 0.001195 0.03% AmrLevel::FillPatch() 41 0.0008849 0.0009222 0.0009607 0.03% Amr::timeStep() 10 0.0001411 0.0002092 0.0004845 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002983 0.0003121 0.0003637 0.01% Castro::do_advance_ctu() 10 0.0001511 0.0001852 0.0002039 0.01% Castro::clean_state() 62 0.0001533 0.0001696 0.0001956 0.01% StateDataPhysBCFunct::() 41 0.0001243 0.0001348 0.0001481 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001165 0.0001253 0.000132 0.00% Castro::do_old_sources() 10 8.294e-05 0.0001011 0.0001154 0.00% FabArray::ParallelCopy() 41 8.92e-05 0.0001024 0.000113 0.00% Castro::construct_old_source() 50 5.985e-05 7.627e-05 0.000103 0.00% Amr::FinalizeInit() 1 4.116e-06 1.603e-05 9.376e-05 0.00% Castro::Castro() 1 4.627e-05 6.721e-05 9.125e-05 0.00% FillPatchSingleLevel 41 6.373e-05 7.056e-05 7.625e-05 0.00% Castro::do_new_sources() 10 5.21e-05 6.316e-05 7.344e-05 0.00% Amr::defBaseLevel() 1 4.484e-05 5.923e-05 6.943e-05 0.00% Castro::apply_source_to_state() 20 4.281e-05 4.84e-05 6.908e-05 0.00% Castro::subcycle_advance_ctu() 10 5.027e-05 5.619e-05 6.8e-05 0.00% Castro::advance() 10 4.648e-05 5.409e-05 6.213e-05 0.00% Castro::construct_old_gravity() 10 3.852e-05 4.81e-05 5.55e-05 0.00% Castro::expand_state() 10 2.636e-05 3.079e-05 4.596e-05 0.00% Castro::construct_new_gravity() 10 3.048e-05 3.552e-05 4.212e-05 0.00% Castro::check_for_nan() 20 2.614e-05 2.849e-05 3.262e-05 0.00% Castro::post_timestep() 10 1.593e-05 1.711e-05 1.907e-05 0.00% Castro::post_init() 1 1.435e-05 1.65e-05 1.903e-05 0.00% Castro::computeNewDt() 9 9.47e-06 1.128e-05 1.327e-05 0.00% Amr::InitializeInit() 1 2.374e-06 3.474e-06 5.499e-06 0.00% Castro::computeInitialDt() 2 3.614e-06 4.136e-06 4.984e-06 0.00% Amr::init() 1 2.014e-06 2.554e-06 2.986e-06 0.00% Amr::initialInit() 1 1.788e-06 2.111e-06 2.776e-06 0.00% Other 261 0.01687 0.01873 0.02082 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.598 3.6 3.601 100.00% Amr::coarseTimeStep() 10 3.384 3.384 3.384 93.98% Amr::timeStep() 10 3.366 3.367 3.369 93.56% Castro::advance() 10 3.35 3.35 3.351 93.06% Castro::subcycle_advance_ctu() 10 3.254 3.271 3.277 91.00% Castro::do_advance_ctu() 10 3.254 3.271 3.277 91.00% Castro::construct_ctu_hydro_source() 10 2.439 2.443 2.45 68.06% Gravity::make_radial_gravity() 21 0.3289 0.3436 0.352 9.78% AmrLevel::FillPatch() 41 0.2228 0.2499 0.2649 7.36% Gravity::get_new_grav_vector() 11 0.2273 0.2303 0.2336 6.49% check_for_negative_density() 10 0.1216 0.2 0.2289 6.36% FillPatchIterator::Initialize 41 0.1928 0.2142 0.2259 6.27% Castro::initialize_do_advance() 10 0.1865 0.2094 0.2179 6.05% Castro::construct_old_gravity() 10 0.1923 0.2023 0.2092 5.81% Gravity::get_old_grav_vector() 10 0.1916 0.2016 0.2085 5.79% Castro::construct_new_gravity() 10 0.202 0.2045 0.2071 5.75% Amr::init() 1 0.197 0.1971 0.1972 5.48% Amr::initialInit() 1 0.1777 0.178 0.1782 4.95% FillPatchIterator::FillFromLevel0() 41 0.1496 0.1644 0.1764 4.90% FillPatchSingleLevel 41 0.1495 0.1643 0.1763 4.90% Castro::expand_state() 10 0.1257 0.15 0.1597 4.44% Amr::InitializeInit() 1 0.05771 0.09607 0.1478 4.10% Amr::defBaseLevel() 1 0.05771 0.09606 0.1478 4.10% FabArray::ParallelCopy() 41 0.1139 0.129 0.1428 3.97% Castro::clean_state() 62 0.1167 0.1248 0.1349 3.75% Castro::estTimeStep() 21 0.03938 0.08873 0.1295 3.60% Castro::initData() 1 0.04121 0.07913 0.1291 3.59% Amr::FinalizeInit() 1 0.03042 0.0819 0.1202 3.34% Castro::do_old_sources() 10 0.09863 0.1036 0.1069 2.97% FabArray::ParallelCopy_finish() 41 0.0741 0.08397 0.1022 2.84% Castro::computeInitialDt() 2 0.00306 0.05477 0.093 2.58% amrex::Copy() 193 0.07856 0.08594 0.09274 2.58% Castro::initialize_advance() 10 0.06991 0.07569 0.09242 2.57% FabArray::setVal() 143 0.06685 0.07192 0.08432 2.34% Castro::computeTemp() 63 0.06558 0.06954 0.07513 2.09% Castro::do_new_sources() 10 0.06349 0.06735 0.07247 2.01% Castro::normalize_species() 62 0.04566 0.04987 0.05418 1.50% Castro::reset_internal_energy(MultiFab) 63 0.04661 0.04986 0.05352 1.49% Castro::reset_internal_energy(Fab) 1008 0.04631 0.04954 0.05315 1.48% FabArray::ParallelCopy_nowait() 41 0.03972 0.04488 0.04826 1.34% StateDataPhysBCFunct::() 41 0.03285 0.03529 0.03838 1.07% StateData::FillBoundary(geom) 41 0.03272 0.03516 0.03825 1.06% Castro::construct_new_source() 50 0.03017 0.03117 0.03289 0.91% Amr::writePlotFile() 2 0.03192 0.03216 0.03244 0.90% Castro::finalize_do_advance() 10 0.01786 0.02408 0.02875 0.80% Gravity::interpolate_monopole_grav() 21 0.02656 0.02747 0.02851 0.79% Castro::post_init() 1 0.02667 0.02701 0.02729 0.76% Castro::construct_new_gravity_source() 10 0.02409 0.0251 0.02658 0.74% VisMF::Write(FabArray) 2 0.009096 0.01144 0.02122 0.59% Castro::post_timestep() 10 0.01582 0.01698 0.01818 0.51% FabArray::setDomainBndry() 41 0.01044 0.01325 0.01557 0.43% Castro::check_for_nan() 20 0.01109 0.01194 0.01447 0.40% MultiFab::contains_nan() 20 0.01107 0.01191 0.01444 0.40% Castro::apply_source_to_state() 20 0.01124 0.01247 0.01368 0.38% FabArray::Saxpy() 20 0.01119 0.01242 0.01363 0.38% Castro::Castro() 1 0.01038 0.011 0.0119 0.33% Castro::computeNewDt() 9 0.01106 0.01107 0.01108 0.31% Castro::construct_old_source() 50 0.007697 0.009353 0.01013 0.28% Castro::construct_old_gravity_source() 10 0.007632 0.009277 0.01005 0.28% Castro::initMFs() 1 0.00645 0.007052 0.008867 0.25% Other 261 0.02716 0.03009 0.03405 0.95% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 37 B 54 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8669 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6733 KiB 6739 KiB 6742 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7138 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4516 KiB 4538 KiB 4547 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 235 KiB 270 KiB 287 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 18 KiB 28 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2787 KiB 2790 KiB 2791 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 232 KiB 243 KiB 249 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 49 KiB 59 KiB 65 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 81 KiB 82 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 71 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.02-9-g198da4879a63) finalized