Initializing AMReX (25.02-10-g63e03ea81732)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.02-10-g63e03ea81732) initialized Starting run at 06:37:31 UTC on 2025-02-12. Successfully read inputs file ... Castro git describe: 25.02 AMReX git describe: 25.02-10-g63e03ea81 Microphysics git describe: 25.02-10-g05b09dcb reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01539904 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.347231078 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.349027711 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.331364783 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.336107031 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.356024384 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.330638871 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.353267514 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.332224621 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.350057069 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.337766039 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010541993 seconds Ending run at 06:37:35 UTC on 2025-02-12. Run time = 3.632187942 Run time without initialization = 3.441227728 Average number of zones advanced per microsecond: 0.762 Average number of zones advanced per microsecond per rank: 0.095 TinyProfiler total time across processes [min...avg...max]: 3.6303 ... 3.6319 ... 3.6323 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1539 2.2678 2.3442 64.54% Gravity::make_radial_gravity() 21 0.3188 0.3279 0.3501 9.64% check_for_negative_density() 10 0.07839 0.1583 0.2802 7.71% FabArray::ParallelCopy_finish() 41 0.04664 0.06587 0.1348 3.71% Castro::estTimeStep() 21 0.03041 0.08314 0.1203 3.31% Castro::initData() 1 0.03893 0.07473 0.1196 3.29% amrex::Copy() 193 0.07724 0.1043 0.1131 3.11% FabArray::setVal() 143 0.05965 0.07508 0.08019 2.21% FabArray::ParallelCopy_nowait() 41 0.03585 0.05193 0.05902 1.62% Castro::normalize_species() 62 0.04684 0.05091 0.05699 1.57% Castro::reset_internal_energy(Fab) 1008 0.04566 0.04933 0.05288 1.46% FillPatchIterator::Initialize 41 0.02822 0.04159 0.04449 1.22% StateData::FillBoundary(geom) 41 0.0341 0.03713 0.04072 1.12% Gravity::interpolate_monopole_grav() 21 0.02721 0.02826 0.0319 0.88% Castro::construct_new_gravity_source() 10 0.02179 0.02742 0.02932 0.81% Castro::initialize_do_advance() 10 0.01336 0.02126 0.02381 0.66% Castro::computeTemp() 63 0.0187 0.01984 0.02108 0.58% FabArray::setDomainBndry() 41 0.01062 0.01554 0.0182 0.50% FabArray::Saxpy() 20 0.009307 0.01539 0.01739 0.48% MultiFab::contains_nan() 20 0.012 0.013 0.01416 0.39% VisMF::Write(FabArray) 2 0.009379 0.01036 0.01318 0.36% Amr::writePlotFile() 2 0.008888 0.01174 0.01314 0.36% Castro::initialize_advance() 10 0.01051 0.01204 0.01254 0.35% Castro::construct_old_gravity_source() 10 0.00629 0.01148 0.01249 0.34% Castro::initMFs() 1 0.006352 0.007419 0.009683 0.27% Castro::construct_new_source() 50 0.005189 0.007351 0.008001 0.22% Amr::coarseTimeStep() 10 0.002579 0.005222 0.007433 0.20% main() 1 0.004455 0.006077 0.006484 0.18% Gravity::get_new_grav_vector() 11 0.003171 0.004287 0.004996 0.14% Gravity::get_old_grav_vector() 10 0.001621 0.002659 0.003127 0.09% Castro::finalize_do_advance() 10 0.001131 0.001198 0.001237 0.03% AmrLevel::FillPatch() 41 0.0008765 0.001024 0.001146 0.03% Amr::timeStep() 10 0.0001626 0.000233 0.0004574 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003028 0.0003277 0.0003482 0.01% Castro::do_advance_ctu() 10 0.0001672 0.0001967 0.0002325 0.01% Castro::clean_state() 62 0.0001541 0.0001839 0.0002033 0.01% StateDataPhysBCFunct::() 41 0.0001315 0.0001532 0.0001907 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001144 0.0001381 0.0001604 0.00% Castro::do_old_sources() 10 8.065e-05 0.0001173 0.0001364 0.00% FabArray::ParallelCopy() 41 0.0001073 0.0001197 0.0001323 0.00% Castro::construct_old_source() 50 5.989e-05 8.956e-05 0.0001199 0.00% Amr::FinalizeInit() 1 4.035e-06 1.755e-05 0.0001006 0.00% Castro::do_new_sources() 10 4.779e-05 8.013e-05 9.609e-05 0.00% FillPatchSingleLevel 41 6.436e-05 7.693e-05 8.303e-05 0.00% Castro::subcycle_advance_ctu() 10 4.172e-05 6.249e-05 7.429e-05 0.00% Amr::defBaseLevel() 1 4.934e-05 6.275e-05 7.192e-05 0.00% Castro::Castro() 1 3.926e-05 5.667e-05 7.137e-05 0.00% Castro::advance() 10 4.461e-05 5.93e-05 6.886e-05 0.00% Castro::construct_old_gravity() 10 4.657e-05 5.398e-05 6.787e-05 0.00% Castro::apply_source_to_state() 20 4.896e-05 5.819e-05 6.631e-05 0.00% Castro::expand_state() 10 1.834e-05 3.9e-05 5.393e-05 0.00% Castro::construct_new_gravity() 10 3.537e-05 4.058e-05 5.247e-05 0.00% Castro::check_for_nan() 20 2.593e-05 3.026e-05 3.555e-05 0.00% Castro::post_init() 1 1.547e-05 1.894e-05 2.936e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.202e-06 1.302e-05 2.097e-05 0.00% Castro::post_timestep() 10 1.784e-05 1.926e-05 2.064e-05 0.00% Castro::computeNewDt() 9 1.07e-05 1.187e-05 1.382e-05 0.00% Amr::init() 1 2.06e-06 3.698e-06 8.068e-06 0.00% Amr::InitializeInit() 1 2.454e-06 3.578e-06 6.372e-06 0.00% Castro::computeInitialDt() 2 3.337e-06 4.183e-06 5.336e-06 0.00% Amr::initialInit() 1 1.813e-06 2.089e-06 2.591e-06 0.00% Other 260 0.01633 0.01993 0.02344 0.65% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.63 3.632 3.632 100.00% Amr::coarseTimeStep() 10 3.424 3.424 3.424 94.27% Amr::timeStep() 10 3.405 3.407 3.41 93.88% Castro::advance() 10 3.388 3.389 3.39 93.33% Castro::subcycle_advance_ctu() 10 3.303 3.308 3.326 91.57% Castro::do_advance_ctu() 10 3.303 3.308 3.326 91.56% Castro::construct_ctu_hydro_source() 10 2.445 2.449 2.456 67.62% Gravity::make_radial_gravity() 21 0.343 0.3502 0.3632 10.00% check_for_negative_density() 10 0.07839 0.1583 0.2802 7.71% AmrLevel::FillPatch() 41 0.2412 0.258 0.2781 7.66% FillPatchIterator::Initialize 41 0.1969 0.2127 0.2442 6.72% Gravity::get_new_grav_vector() 11 0.2347 0.2356 0.2375 6.54% Castro::construct_old_gravity() 10 0.2092 0.2156 0.2241 6.17% Gravity::get_old_grav_vector() 10 0.2083 0.2147 0.2231 6.14% Castro::initialize_do_advance() 10 0.1971 0.2048 0.2129 5.86% Castro::construct_new_gravity() 10 0.2091 0.2096 0.2112 5.81% FillPatchIterator::FillFromLevel0() 41 0.1375 0.1555 0.2054 5.65% FillPatchSingleLevel 41 0.1373 0.1554 0.2053 5.65% Amr::init() 1 0.1904 0.1905 0.1906 5.25% Amr::initialInit() 1 0.1748 0.1751 0.1754 4.83% FabArray::ParallelCopy() 41 0.1018 0.118 0.1709 4.71% Castro::expand_state() 10 0.1345 0.1428 0.1603 4.41% Amr::InitializeInit() 1 0.05929 0.09617 0.1452 4.00% Amr::defBaseLevel() 1 0.05928 0.09616 0.1452 4.00% FabArray::ParallelCopy_finish() 41 0.04664 0.06587 0.1348 3.71% Castro::clean_state() 62 0.1214 0.1262 0.1341 3.69% Castro::initData() 1 0.04235 0.07846 0.1233 3.39% Castro::estTimeStep() 21 0.03041 0.08314 0.1203 3.31% Castro::do_old_sources() 10 0.1131 0.1168 0.1202 3.31% Amr::FinalizeInit() 1 0.02976 0.07892 0.1156 3.18% amrex::Copy() 193 0.07724 0.1043 0.1131 3.11% Castro::computeInitialDt() 2 0.002336 0.05138 0.0881 2.43% Castro::initialize_advance() 10 0.05966 0.07736 0.08211 2.26% FabArray::setVal() 143 0.05965 0.07508 0.08019 2.21% Castro::do_new_sources() 10 0.05959 0.07182 0.07488 2.06% Castro::computeTemp() 63 0.06468 0.06949 0.07431 2.05% FabArray::ParallelCopy_nowait() 41 0.03595 0.05204 0.05912 1.63% Castro::normalize_species() 62 0.04684 0.05091 0.05699 1.57% Castro::reset_internal_energy(MultiFab) 63 0.04598 0.04965 0.05323 1.47% Castro::reset_internal_energy(Fab) 1008 0.04566 0.04933 0.05288 1.46% StateDataPhysBCFunct::() 41 0.03429 0.03728 0.04086 1.12% StateData::FillBoundary(geom) 41 0.0341 0.03713 0.04072 1.12% Castro::construct_new_source() 50 0.02698 0.03477 0.03729 1.03% Castro::finalize_do_advance() 10 0.01779 0.02252 0.03568 0.98% Gravity::interpolate_monopole_grav() 21 0.02721 0.02826 0.0319 0.88% Castro::construct_new_gravity_source() 10 0.02179 0.02742 0.02932 0.81% Castro::post_init() 1 0.0268 0.02695 0.02714 0.75% Amr::writePlotFile() 2 0.02581 0.02608 0.02629 0.72% Castro::post_timestep() 10 0.01663 0.01765 0.01992 0.55% FabArray::setDomainBndry() 41 0.01062 0.01554 0.0182 0.50% Castro::apply_source_to_state() 20 0.009356 0.01545 0.01746 0.48% FabArray::Saxpy() 20 0.009307 0.01539 0.01739 0.48% Castro::check_for_nan() 20 0.01203 0.01303 0.01419 0.39% MultiFab::contains_nan() 20 0.012 0.013 0.01416 0.39% Castro::Castro() 1 0.009627 0.01095 0.01372 0.38% VisMF::Write(FabArray) 2 0.009379 0.01036 0.01318 0.36% Castro::construct_old_source() 50 0.00635 0.01157 0.01257 0.35% Castro::construct_old_gravity_source() 10 0.00629 0.01148 0.01249 0.34% Castro::computeNewDt() 9 0.01044 0.01045 0.01046 0.29% Castro::initMFs() 1 0.006352 0.007419 0.009683 0.27% AmrLevel::AmrLevel(dm) 1 0.005376 0.006506 0.008143 0.22% Other 260 0.02077 0.02584 0.0302 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 47 B 88 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8667 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6753 KiB 6758 KiB 6759 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4544 KiB 4550 KiB 4575 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 250 KiB 266 KiB 293 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 18 KiB 22 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2796 KiB 2799 KiB 2799 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 240 KiB 245 KiB 255 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 43 KiB 49 KiB 73 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 83 KiB 83 KiB 84 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 73 KiB 75 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.02-10-g63e03ea81732) finalized