Initializing AMReX (25.02-11-g159a069f66d3)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.02-11-g159a069f66d3) initialized Starting run at 06:20:46 UTC on 2025-02-13. Successfully read inputs file ... Castro git describe: 25.02 AMReX git describe: 25.02-11-g159a069f6 Microphysics git describe: 25.02-10-g05b09dcb reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.019860212 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.420980518 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.4134552 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.401731728 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.421000821 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.387948352 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.373690773 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.395464158 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.367863483 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.337550653 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.329903878 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009873556 seconds Ending run at 06:20:50 UTC on 2025-02-13. Run time = 4.038837779 Run time without initialization = 3.866282963 Average number of zones advanced per microsecond: 0.678 Average number of zones advanced per microsecond per rank: 0.085 TinyProfiler total time across processes [min...avg...max]: 4.0373 ... 4.0383 ... 4.0389 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.5173 2.6456 2.7260 67.49% Gravity::make_radial_gravity() 21 0.338 0.3465 0.3611 8.94% check_for_negative_density() 10 0.08438 0.1659 0.2983 7.38% FabArray::ParallelCopy_finish() 41 0.05774 0.06687 0.1057 2.62% Castro::initData() 1 0.03766 0.07519 0.1021 2.53% amrex::Copy() 193 0.08749 0.09852 0.1013 2.51% Castro::estTimeStep() 21 0.02904 0.05866 0.09671 2.39% FabArray::setVal() 143 0.062 0.07658 0.08622 2.13% Castro::reset_internal_energy(Fab) 1008 0.05002 0.05232 0.05773 1.43% Castro::normalize_species() 62 0.04683 0.05038 0.05733 1.42% FabArray::ParallelCopy_nowait() 41 0.04947 0.05459 0.0571 1.41% FillPatchIterator::Initialize 41 0.04015 0.05105 0.05477 1.36% StateData::FillBoundary(geom) 41 0.04034 0.04403 0.04831 1.20% Gravity::interpolate_monopole_grav() 21 0.02726 0.02822 0.0289 0.72% Castro::construct_new_gravity_source() 10 0.02553 0.02617 0.02667 0.66% FabArray::setDomainBndry() 41 0.01742 0.02094 0.02425 0.60% Castro::computeTemp() 63 0.01938 0.02034 0.0218 0.54% Castro::initialize_do_advance() 10 0.01738 0.01985 0.02101 0.52% FabArray::Saxpy() 20 0.01467 0.01703 0.01856 0.46% VisMF::Write(FabArray) 2 0.01237 0.01327 0.01703 0.42% Amr::writePlotFile() 2 0.009311 0.01319 0.0147 0.36% MultiFab::contains_nan() 20 0.01144 0.01304 0.01427 0.35% Castro::initialize_advance() 10 0.00936 0.01123 0.01195 0.30% Castro::construct_old_gravity_source() 10 0.008818 0.01109 0.01172 0.29% Castro::construct_new_source() 50 0.006995 0.008709 0.009412 0.23% Castro::initMFs() 1 0.006411 0.00703 0.007542 0.19% main() 1 0.004649 0.005621 0.006259 0.15% Amr::coarseTimeStep() 10 0.002211 0.003908 0.005812 0.14% Gravity::get_new_grav_vector() 11 0.003969 0.004558 0.005375 0.13% Gravity::get_old_grav_vector() 10 0.002208 0.00282 0.003487 0.09% Castro::finalize_do_advance() 10 0.001199 0.001347 0.001857 0.05% AmrLevel::FillPatch() 41 0.001136 0.001296 0.001787 0.04% Amr::timeStep() 10 0.000154 0.0002358 0.0005317 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002968 0.0003244 0.0003597 0.01% Castro::do_advance_ctu() 10 0.0001449 0.0001945 0.0002399 0.01% Castro::clean_state() 62 0.0001525 0.0001784 0.0002043 0.01% StateDataPhysBCFunct::() 41 0.0001114 0.000131 0.0001598 0.00% FillPatchIterator::FillFromLevel0() 41 0.000106 0.0001244 0.0001536 0.00% Castro::do_old_sources() 10 7.916e-05 0.0001043 0.0001208 0.00% FabArray::ParallelCopy() 41 7.941e-05 0.0001018 0.0001166 0.00% Amr::FinalizeInit() 1 3.904e-06 1.729e-05 0.0001048 0.00% Castro::Castro() 1 5.312e-05 6.903e-05 9.763e-05 0.00% Castro::construct_old_source() 50 6.957e-05 7.703e-05 9.363e-05 0.00% FillPatchSingleLevel 41 6.903e-05 7.683e-05 8.464e-05 0.00% Castro::do_new_sources() 10 6.416e-05 7.692e-05 8.089e-05 0.00% Castro::advance() 10 5.66e-05 6.27e-05 7.308e-05 0.00% Castro::subcycle_advance_ctu() 10 5.857e-05 6.293e-05 6.708e-05 0.00% Castro::apply_source_to_state() 20 4.278e-05 4.794e-05 5.632e-05 0.00% Amr::defBaseLevel() 1 4.439e-05 4.858e-05 5.496e-05 0.00% Castro::construct_old_gravity() 10 3.283e-05 4.368e-05 5.282e-05 0.00% Castro::construct_new_gravity() 10 3.1e-05 3.911e-05 4.807e-05 0.00% Castro::expand_state() 10 2.394e-05 2.957e-05 3.487e-05 0.00% Castro::check_for_nan() 20 2.613e-05 2.941e-05 3.275e-05 0.00% Castro::post_timestep() 10 1.723e-05 2.147e-05 2.538e-05 0.00% Castro::post_init() 1 1.442e-05 1.668e-05 2.286e-05 0.00% Castro::computeNewDt() 9 1.144e-05 1.299e-05 1.464e-05 0.00% Amr::InitializeInit() 1 2.558e-06 3.242e-06 5.541e-06 0.00% Castro::computeInitialDt() 2 3.322e-06 3.812e-06 4.333e-06 0.00% Amr::init() 1 2.003e-06 2.248e-06 2.561e-06 0.00% Amr::initialInit() 1 1.511e-06 1.987e-06 2.395e-06 0.00% Other 261 0.01737 0.02025 0.02233 0.55% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.037 4.038 4.039 100.00% Amr::coarseTimeStep() 10 3.85 3.85 3.85 95.33% Amr::timeStep() 10 3.834 3.835 3.837 95.00% Castro::advance() 10 3.817 3.818 3.818 94.54% Castro::subcycle_advance_ctu() 10 3.731 3.738 3.751 92.88% Castro::do_advance_ctu() 10 3.731 3.738 3.751 92.88% Castro::construct_ctu_hydro_source() 10 2.831 2.835 2.838 70.27% Gravity::make_radial_gravity() 21 0.3621 0.3705 0.3807 9.43% check_for_negative_density() 10 0.08438 0.1659 0.2983 7.38% AmrLevel::FillPatch() 41 0.2636 0.2791 0.2927 7.25% FillPatchIterator::Initialize 41 0.2242 0.238 0.2565 6.35% Gravity::get_new_grav_vector() 11 0.2375 0.2398 0.2414 5.98% Castro::construct_old_gravity() 10 0.2198 0.227 0.2331 5.77% Gravity::get_old_grav_vector() 10 0.2192 0.2264 0.2325 5.76% Castro::initialize_do_advance() 10 0.2082 0.2199 0.2263 5.60% Castro::construct_new_gravity() 10 0.2118 0.2138 0.2149 5.32% FillPatchIterator::FillFromLevel0() 41 0.1537 0.166 0.1989 4.93% FillPatchSingleLevel 41 0.1535 0.1659 0.1988 4.92% Amr::init() 1 0.172 0.1722 0.1722 4.26% Castro::expand_state() 10 0.1483 0.1591 0.1699 4.21% FabArray::ParallelCopy() 41 0.1114 0.1217 0.1554 3.85% Amr::initialInit() 1 0.1515 0.1522 0.1525 3.78% Castro::clean_state() 62 0.1236 0.1294 0.1434 3.55% Castro::do_old_sources() 10 0.1201 0.1248 0.1285 3.18% Amr::InitializeInit() 1 0.05775 0.09618 0.1223 3.03% Amr::defBaseLevel() 1 0.05775 0.09618 0.1223 3.03% Castro::initData() 1 0.04168 0.07929 0.1065 2.64% FabArray::ParallelCopy_finish() 41 0.05774 0.06687 0.1057 2.62% amrex::Copy() 193 0.08749 0.09852 0.1013 2.51% Castro::estTimeStep() 21 0.02904 0.05866 0.09671 2.39% Amr::FinalizeInit() 1 0.03019 0.056 0.09459 2.34% FabArray::setVal() 143 0.062 0.07658 0.08622 2.13% Castro::initialize_advance() 10 0.06246 0.07615 0.08312 2.06% Castro::do_new_sources() 10 0.07198 0.07712 0.08118 2.01% Castro::computeTemp() 63 0.07012 0.07299 0.0799 1.98% Castro::computeInitialDt() 2 0.002311 0.02838 0.06683 1.65% Castro::reset_internal_energy(MultiFab) 63 0.05038 0.05265 0.05809 1.44% Castro::reset_internal_energy(Fab) 1008 0.05002 0.05232 0.05773 1.43% Castro::normalize_species() 62 0.04683 0.05038 0.05733 1.42% FabArray::ParallelCopy_nowait() 41 0.04956 0.05468 0.0572 1.42% StateDataPhysBCFunct::() 41 0.04045 0.04416 0.04845 1.20% StateData::FillBoundary(geom) 41 0.04034 0.04403 0.04831 1.20% Castro::construct_new_source() 50 0.03317 0.03488 0.0357 0.88% Amr::writePlotFile() 2 0.02966 0.02994 0.03063 0.76% Gravity::interpolate_monopole_grav() 21 0.02726 0.02822 0.0289 0.72% Castro::post_init() 1 0.02645 0.02702 0.02728 0.68% Castro::finalize_do_advance() 10 0.01771 0.02198 0.02727 0.68% Castro::construct_new_gravity_source() 10 0.02553 0.02617 0.02667 0.66% FabArray::setDomainBndry() 41 0.01742 0.02094 0.02425 0.60% Castro::post_timestep() 10 0.01666 0.01741 0.0189 0.47% Castro::apply_source_to_state() 20 0.01473 0.01708 0.0186 0.46% FabArray::Saxpy() 20 0.01467 0.01703 0.01856 0.46% VisMF::Write(FabArray) 2 0.01237 0.01327 0.01703 0.42% Castro::check_for_nan() 20 0.01148 0.01307 0.0143 0.35% MultiFab::contains_nan() 20 0.01144 0.01304 0.01427 0.35% Castro::construct_old_source() 50 0.00889 0.01117 0.01179 0.29% Castro::construct_old_gravity_source() 10 0.008818 0.01109 0.01172 0.29% Castro::Castro() 1 0.009819 0.0109 0.01168 0.29% Castro::computeNewDt() 9 0.009631 0.009674 0.009693 0.24% Castro::initMFs() 1 0.006411 0.00703 0.007542 0.19% Other 261 0.02709 0.03182 0.03506 0.87% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 29 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8664 KiB 8673 KiB 8676 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6824 KiB 6830 KiB 6831 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4612 KiB 4623 KiB 4641 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 247 KiB 264 KiB 281 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 19 KiB 23 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2833 KiB 2835 KiB 2836 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 228 KiB 233 KiB 239 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 44 KiB 48 KiB 62 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 76 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 72 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.02-11-g159a069f66d3) finalized