Initializing AMReX (25.02-14-gfab041115032)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.02-14-gfab041115032) initialized Starting run at 06:41:02 UTC on 2025-02-14. Successfully read inputs file ... Castro git describe: 25.02 AMReX git describe: 25.02-14-gfab041115 Microphysics git describe: 25.02-17-g3e1d2d75 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015551452 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.350073496 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.338089803 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.319195719 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.309464917 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.376432201 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.336168081 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.300031885 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299954856 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.301597541 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.300157219 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008928389 seconds Ending run at 06:41:06 UTC on 2025-02-14. Run time = 3.425950329 Run time without initialization = 3.245728953 Average number of zones advanced per microsecond: 0.808 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4250 ... 3.4255 ... 3.4260 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1227 2.1764 2.2434 65.48% Gravity::make_radial_gravity() 21 0.3125 0.33 0.347 10.13% check_for_negative_density() 10 0.09168 0.1661 0.2157 6.30% Castro::initData() 1 0.037 0.07022 0.1011 2.95% Castro::estTimeStep() 21 0.03249 0.06492 0.09879 2.88% FabArray::ParallelCopy_finish() 41 0.0398 0.06053 0.09513 2.78% amrex::Copy() 193 0.06227 0.07882 0.09166 2.68% FabArray::setVal() 143 0.05248 0.06654 0.07491 2.19% Castro::reset_internal_energy(Fab) 1008 0.04437 0.04695 0.04906 1.43% Castro::normalize_species() 62 0.04557 0.04702 0.04808 1.40% FabArray::ParallelCopy_nowait() 41 0.03425 0.04131 0.04433 1.29% StateData::FillBoundary(geom) 41 0.02973 0.03302 0.03829 1.12% FillPatchIterator::Initialize 41 0.02756 0.03275 0.03623 1.06% Gravity::interpolate_monopole_grav() 21 0.02663 0.02765 0.03077 0.90% Castro::construct_new_gravity_source() 10 0.02299 0.02514 0.02641 0.77% Castro::computeTemp() 63 0.01794 0.01863 0.01991 0.58% Castro::initialize_do_advance() 10 0.01129 0.01569 0.01757 0.51% Castro::initialize_advance() 10 0.005263 0.01079 0.01567 0.46% FabArray::Saxpy() 20 0.009248 0.01236 0.01474 0.43% FabArray::setDomainBndry() 41 0.007541 0.0112 0.01471 0.43% VisMF::Write(FabArray) 2 0.009231 0.01004 0.01346 0.39% Amr::writePlotFile() 2 0.008673 0.01149 0.01251 0.37% MultiFab::contains_nan() 20 0.01067 0.01138 0.01203 0.35% Castro::construct_old_gravity_source() 10 0.006188 0.009263 0.01024 0.30% Castro::initMFs() 1 0.006542 0.006644 0.007104 0.21% Castro::construct_new_source() 50 0.005265 0.006149 0.006454 0.19% main() 1 0.004065 0.004538 0.005113 0.15% Gravity::get_new_grav_vector() 11 0.002776 0.003549 0.004219 0.12% Amr::coarseTimeStep() 10 0.001624 0.002188 0.002998 0.09% Gravity::get_old_grav_vector() 10 0.001547 0.002035 0.002511 0.07% Castro::finalize_do_advance() 10 0.0006216 0.001068 0.001226 0.04% AmrLevel::FillPatch() 41 0.0009161 0.001116 0.001197 0.03% Amr::timeStep() 10 0.0001598 0.0002063 0.000478 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002748 0.0003009 0.0003248 0.01% Castro::do_advance_ctu() 10 0.0001404 0.0001811 0.0002028 0.01% Castro::clean_state() 62 0.0001421 0.0001572 0.0001773 0.01% StateDataPhysBCFunct::() 41 0.0001049 0.0001213 0.0001334 0.00% Castro::do_old_sources() 10 8.049e-05 9.674e-05 0.000117 0.00% Castro::construct_old_source() 50 5.246e-05 7.143e-05 0.0001166 0.00% FillPatchIterator::FillFromLevel0() 41 9.543e-05 0.0001026 0.0001119 0.00% FabArray::ParallelCopy() 41 8.476e-05 9.78e-05 0.0001112 0.00% Castro::Castro() 1 7.04e-05 8.793e-05 0.0001074 0.00% Amr::FinalizeInit() 1 3.91e-06 1.394e-05 7.884e-05 0.00% Castro::do_new_sources() 10 5.011e-05 6.523e-05 7.733e-05 0.00% Amr::defBaseLevel() 1 4.763e-05 6.598e-05 7.7e-05 0.00% FillPatchSingleLevel 41 6.193e-05 6.646e-05 7.145e-05 0.00% Castro::advance() 10 3.773e-05 5.048e-05 6.712e-05 0.00% Castro::subcycle_advance_ctu() 10 4.442e-05 5.429e-05 6.622e-05 0.00% Castro::apply_source_to_state() 20 3.804e-05 4.915e-05 6.275e-05 0.00% Castro::construct_old_gravity() 10 3.318e-05 3.988e-05 4.551e-05 0.00% Castro::construct_new_gravity() 10 3.225e-05 3.775e-05 4.401e-05 0.00% Castro::check_for_nan() 20 2.391e-05 2.644e-05 3.092e-05 0.00% Castro::expand_state() 10 2.082e-05 2.47e-05 2.858e-05 0.00% Castro::post_timestep() 10 1.584e-05 1.806e-05 2.115e-05 0.00% Castro::post_init() 1 1.43e-05 1.668e-05 1.879e-05 0.00% Castro::computeNewDt() 9 9.638e-06 1.076e-05 1.195e-05 0.00% Amr::init() 1 1.85e-06 2.777e-06 6.26e-06 0.00% Amr::InitializeInit() 1 2.4e-06 3.413e-06 5.986e-06 0.00% Castro::computeInitialDt() 2 3.347e-06 3.787e-06 4.2e-06 0.00% Amr::initialInit() 1 1.442e-06 2.072e-06 2.712e-06 0.00% Other 261 0.01615 0.01797 0.01903 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.425 3.425 3.426 100.00% Amr::coarseTimeStep() 10 3.232 3.232 3.232 94.33% Amr::timeStep() 10 3.218 3.219 3.219 93.97% Castro::advance() 10 3.202 3.202 3.203 93.48% Castro::subcycle_advance_ctu() 10 3.119 3.13 3.146 91.82% Castro::do_advance_ctu() 10 3.119 3.13 3.146 91.82% Castro::construct_ctu_hydro_source() 10 2.357 2.364 2.371 69.19% Gravity::make_radial_gravity() 21 0.33 0.3463 0.3593 10.49% Gravity::get_new_grav_vector() 11 0.2308 0.2333 0.2351 6.86% AmrLevel::FillPatch() 41 0.1942 0.2112 0.2218 6.47% check_for_negative_density() 10 0.09168 0.1661 0.2157 6.30% Castro::construct_old_gravity() 10 0.187 0.1997 0.2104 6.14% Gravity::get_old_grav_vector() 10 0.1864 0.1991 0.2097 6.12% FillPatchIterator::Initialize 41 0.1668 0.1793 0.1986 5.80% Castro::construct_new_gravity() 10 0.193 0.195 0.1966 5.74% Amr::init() 1 0.1797 0.1799 0.1799 5.25% Castro::initialize_do_advance() 10 0.1579 0.169 0.1739 5.08% Amr::initialInit() 1 0.164 0.1646 0.1651 4.82% FillPatchIterator::FillFromLevel0() 41 0.1224 0.1354 0.1628 4.75% FillPatchSingleLevel 41 0.1223 0.1352 0.1627 4.75% FabArray::ParallelCopy() 41 0.08383 0.102 0.1296 3.78% Castro::expand_state() 10 0.1048 0.1158 0.1266 3.70% Amr::InitializeInit() 1 0.05803 0.09139 0.1223 3.57% Amr::defBaseLevel() 1 0.05803 0.09138 0.1223 3.57% Castro::clean_state() 62 0.1155 0.1182 0.1222 3.57% Amr::FinalizeInit() 1 0.0426 0.07319 0.107 3.12% Castro::initData() 1 0.04103 0.07423 0.1051 3.07% Castro::do_old_sources() 10 0.09372 0.09885 0.1026 2.99% Castro::estTimeStep() 21 0.03249 0.06492 0.09879 2.88% FabArray::ParallelCopy_finish() 41 0.0398 0.06053 0.09513 2.78% amrex::Copy() 193 0.06227 0.07882 0.09166 2.68% Castro::initialize_advance() 10 0.05286 0.06865 0.07958 2.32% FabArray::setVal() 143 0.05248 0.06654 0.07491 2.19% Castro::computeTemp() 63 0.06263 0.06588 0.06892 2.01% Castro::do_new_sources() 10 0.05731 0.06448 0.06767 1.98% Castro::computeInitialDt() 2 0.002276 0.03316 0.06654 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04469 0.04725 0.04936 1.44% Castro::reset_internal_energy(Fab) 1008 0.04437 0.04695 0.04906 1.43% Castro::normalize_species() 62 0.04557 0.04702 0.04808 1.40% FabArray::ParallelCopy_nowait() 41 0.03435 0.04141 0.04442 1.30% Castro::post_init() 1 0.03908 0.03959 0.04012 1.17% StateDataPhysBCFunct::() 41 0.02983 0.03315 0.03842 1.12% StateData::FillBoundary(geom) 41 0.02973 0.03302 0.03829 1.12% Castro::construct_new_source() 50 0.02825 0.03129 0.03277 0.96% Gravity::interpolate_monopole_grav() 21 0.02663 0.02765 0.03077 0.90% Castro::finalize_do_advance() 10 0.01916 0.02325 0.03056 0.89% Castro::construct_new_gravity_source() 10 0.02299 0.02514 0.02641 0.77% Amr::writePlotFile() 2 0.02378 0.02431 0.02479 0.72% Castro::post_timestep() 10 0.01584 0.01612 0.01668 0.49% Castro::apply_source_to_state() 20 0.009286 0.01241 0.01481 0.43% FabArray::Saxpy() 20 0.009248 0.01236 0.01474 0.43% FabArray::setDomainBndry() 41 0.007541 0.0112 0.01471 0.43% VisMF::Write(FabArray) 2 0.009231 0.01004 0.01346 0.39% Castro::check_for_nan() 20 0.01069 0.0114 0.01206 0.35% MultiFab::contains_nan() 20 0.01067 0.01138 0.01203 0.35% Castro::Castro() 1 0.01108 0.01132 0.01195 0.35% Castro::construct_old_source() 50 0.00624 0.009335 0.01031 0.30% Castro::construct_old_gravity_source() 10 0.006188 0.009263 0.01024 0.30% Castro::computeNewDt() 9 0.00956 0.009589 0.009613 0.28% Castro::initMFs() 1 0.006542 0.006644 0.007104 0.21% Other 261 0.02639 0.02873 0.03033 0.89% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 32 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8670 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6752 KiB 6759 KiB 6762 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4549 KiB 4565 KiB 4589 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 209 KiB 230 KiB 247 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2800 KiB 2803 KiB 2804 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 245 KiB 257 KiB 267 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 45 KiB 60 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 86 KiB 87 KiB 88 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 74 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.02-14-gfab041115032) finalized