Initializing AMReX (25.02-15-gf8d7483dc43c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.02-15-gf8d7483dc43c) initialized Starting run at 06:27:46 UTC on 2025-02-17. Successfully read inputs file ... Castro git describe: 25.02-4-g82feac296 AMReX git describe: 25.02-15-gf8d7483dc Microphysics git describe: 25.02-19-gd90e290f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.019826519 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.360953345 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.355121407 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.315155453 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.331185922 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.363601727 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.304228605 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296310492 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297572284 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.297739904 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.305045348 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00762944 seconds Ending run at 06:27:49 UTC on 2025-02-17. Run time = 3.45976466 Run time without initialization = 3.263195483 Average number of zones advanced per microsecond: 0.803 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.4590 ... 3.4596 ... 3.4598 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1273 2.2039 2.2496 65.02% Gravity::make_radial_gravity() 21 0.304 0.3091 0.3229 9.33% check_for_negative_density() 10 0.07403 0.1204 0.1972 5.70% Castro::estTimeStep() 21 0.03249 0.07347 0.1275 3.69% Castro::initData() 1 0.03721 0.08442 0.1227 3.55% FabArray::ParallelCopy_finish() 41 0.0388 0.07483 0.09919 2.87% amrex::Copy() 193 0.06674 0.08009 0.08617 2.49% FabArray::setVal() 143 0.06438 0.07097 0.08537 2.47% Castro::normalize_species() 62 0.04572 0.04827 0.06183 1.79% Castro::reset_internal_energy(Fab) 1008 0.04553 0.04785 0.05405 1.56% FabArray::ParallelCopy_nowait() 41 0.03425 0.04011 0.0421 1.22% Amr::writePlotFile() 2 0.03124 0.03673 0.03895 1.13% FillPatchIterator::Initialize 41 0.02794 0.03223 0.03661 1.06% StateData::FillBoundary(geom) 41 0.02905 0.03245 0.03474 1.00% Gravity::interpolate_monopole_grav() 21 0.02657 0.02712 0.02759 0.80% Castro::construct_new_gravity_source() 10 0.02312 0.02385 0.02531 0.73% Castro::initialize_do_advance() 10 0.01342 0.01695 0.02241 0.65% Castro::computeTemp() 63 0.01825 0.01865 0.01953 0.56% VisMF::Write(FabArray) 2 0.009494 0.01135 0.01711 0.49% MultiFab::contains_nan() 20 0.01044 0.01227 0.01463 0.42% Castro::initialize_advance() 10 0.01056 0.01195 0.01428 0.41% FabArray::setDomainBndry() 41 0.00763 0.01068 0.01327 0.38% FabArray::Saxpy() 20 0.01053 0.01204 0.01291 0.37% Castro::initMFs() 1 0.006397 0.007608 0.009998 0.29% Castro::construct_old_gravity_source() 10 0.006449 0.0088 0.009375 0.27% Castro::construct_new_source() 50 0.005234 0.005978 0.006334 0.18% Amr::coarseTimeStep() 10 0.001917 0.004022 0.004818 0.14% main() 1 0.003782 0.004324 0.004613 0.13% Gravity::get_new_grav_vector() 11 0.003336 0.003529 0.003913 0.11% Gravity::get_old_grav_vector() 10 0.001633 0.001981 0.002281 0.07% Castro::finalize_do_advance() 10 0.0005781 0.001111 0.001488 0.04% AmrLevel::FillPatch() 41 0.0008554 0.000942 0.00109 0.03% Amr::timeStep() 10 0.0001375 0.0001899 0.0004037 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002825 0.0003122 0.0003794 0.01% Castro::clean_state() 62 0.0001543 0.0001716 0.0002457 0.01% Castro::do_advance_ctu() 10 0.0001451 0.0001785 0.0002333 0.01% StateDataPhysBCFunct::() 41 0.0001232 0.0001561 0.000183 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001085 0.00012 0.0001324 0.00% FabArray::ParallelCopy() 41 9.112e-05 0.0001045 0.0001218 0.00% Amr::FinalizeInit() 1 3.555e-06 1.754e-05 0.0001013 0.00% Castro::do_old_sources() 10 7.528e-05 9.007e-05 9.704e-05 0.00% Castro::Castro() 1 5.567e-05 6.886e-05 8.316e-05 0.00% FillPatchSingleLevel 41 6.49e-05 7.172e-05 8.018e-05 0.00% Castro::construct_old_source() 50 5.771e-05 6.799e-05 7.744e-05 0.00% Castro::do_new_sources() 10 5.901e-05 6.504e-05 7.326e-05 0.00% Castro::apply_source_to_state() 20 4.953e-05 5.554e-05 6.828e-05 0.00% Amr::defBaseLevel() 1 5.385e-05 5.787e-05 6.379e-05 0.00% Castro::subcycle_advance_ctu() 10 4.259e-05 5.302e-05 6.211e-05 0.00% Castro::advance() 10 4.358e-05 5.015e-05 5.755e-05 0.00% Castro::construct_old_gravity() 10 3.994e-05 4.488e-05 5.276e-05 0.00% Castro::construct_new_gravity() 10 3.051e-05 3.836e-05 4.922e-05 0.00% Castro::check_for_nan() 20 2.696e-05 3.28e-05 3.951e-05 0.00% Castro::expand_state() 10 1.891e-05 2.47e-05 3.041e-05 0.00% Castro::post_init() 1 1.649e-05 1.958e-05 2.376e-05 0.00% Castro::post_timestep() 10 1.442e-05 1.607e-05 1.891e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.836e-06 1.184e-05 1.472e-05 0.00% Castro::computeNewDt() 9 8.997e-06 1.087e-05 1.209e-05 0.00% Amr::InitializeInit() 1 2.884e-06 3.664e-06 6.38e-06 0.00% Castro::computeInitialDt() 2 3.991e-06 4.572e-06 5.482e-06 0.00% Amr::init() 1 2.144e-06 2.709e-06 3.468e-06 0.00% Amr::initialInit() 1 1.647e-06 2.018e-06 2.451e-06 0.00% Other 260 0.01595 0.01953 0.02234 0.65% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.459 3.46 3.46 100.00% Amr::coarseTimeStep() 10 3.228 3.228 3.228 93.29% Amr::timeStep() 10 3.212 3.213 3.215 92.93% Castro::advance() 10 3.196 3.197 3.197 92.40% Castro::subcycle_advance_ctu() 10 3.099 3.118 3.124 90.30% Castro::do_advance_ctu() 10 3.099 3.118 3.124 90.30% Castro::construct_ctu_hydro_source() 10 2.344 2.346 2.352 67.98% Gravity::make_radial_gravity() 21 0.3191 0.3251 0.3363 9.72% AmrLevel::FillPatch() 41 0.1908 0.224 0.2361 6.82% Gravity::get_new_grav_vector() 11 0.2139 0.2168 0.2187 6.32% Castro::construct_old_gravity() 10 0.1872 0.1932 0.2066 5.97% Gravity::get_old_grav_vector() 10 0.1861 0.1923 0.2059 5.95% FillPatchIterator::Initialize 41 0.1582 0.1908 0.2014 5.82% Castro::initialize_do_advance() 10 0.1678 0.1901 0.1993 5.76% check_for_negative_density() 10 0.07403 0.1204 0.1972 5.70% Amr::init() 1 0.196 0.1962 0.1962 5.67% Castro::construct_new_gravity() 10 0.1879 0.1903 0.1918 5.54% Amr::initialInit() 1 0.176 0.1763 0.1765 5.10% FillPatchIterator::FillFromLevel0() 41 0.1115 0.1479 0.163 4.71% FillPatchSingleLevel 41 0.1113 0.1478 0.1629 4.71% Amr::InitializeInit() 1 0.05557 0.1071 0.1456 4.21% Amr::defBaseLevel() 1 0.05557 0.107 0.1456 4.21% Castro::expand_state() 10 0.1086 0.1352 0.1444 4.17% Castro::clean_state() 62 0.1152 0.1203 0.1343 3.88% FabArray::ParallelCopy() 41 0.07992 0.1151 0.1336 3.86% Castro::estTimeStep() 21 0.03249 0.07347 0.1275 3.69% Castro::initData() 1 0.04066 0.08866 0.1269 3.67% Amr::FinalizeInit() 1 0.03082 0.06929 0.1207 3.49% FabArray::ParallelCopy_finish() 41 0.0388 0.07483 0.09919 2.87% Castro::do_old_sources() 10 0.09117 0.09453 0.09763 2.82% Castro::initialize_advance() 10 0.06942 0.07551 0.0944 2.73% Castro::computeInitialDt() 2 0.002925 0.0415 0.09305 2.69% amrex::Copy() 193 0.06674 0.08009 0.08617 2.49% FabArray::setVal() 143 0.06438 0.07097 0.08537 2.47% Castro::computeTemp() 63 0.06411 0.06681 0.07396 2.14% Castro::do_new_sources() 10 0.06061 0.06327 0.06635 1.92% Castro::normalize_species() 62 0.04572 0.04827 0.06183 1.79% Castro::reset_internal_energy(MultiFab) 63 0.04583 0.04816 0.05443 1.57% Castro::reset_internal_energy(Fab) 1008 0.04553 0.04785 0.05405 1.56% Amr::writePlotFile() 2 0.05091 0.05102 0.05118 1.48% FabArray::ParallelCopy_nowait() 41 0.03434 0.04019 0.04218 1.22% StateDataPhysBCFunct::() 41 0.02918 0.0326 0.03493 1.01% StateData::FillBoundary(geom) 41 0.02905 0.03245 0.03474 1.00% Castro::construct_new_source() 50 0.02887 0.02983 0.03165 0.91% Castro::post_init() 1 0.02685 0.02747 0.02767 0.80% Gravity::interpolate_monopole_grav() 21 0.02657 0.02712 0.02759 0.80% Castro::finalize_do_advance() 10 0.02203 0.02443 0.02701 0.78% Castro::construct_new_gravity_source() 10 0.02312 0.02385 0.02531 0.73% Castro::post_timestep() 10 0.01578 0.01639 0.01876 0.54% VisMF::Write(FabArray) 2 0.009494 0.01135 0.01711 0.49% Castro::check_for_nan() 20 0.01047 0.0123 0.01466 0.42% MultiFab::contains_nan() 20 0.01044 0.01227 0.01463 0.42% Castro::Castro() 1 0.009168 0.01161 0.01352 0.39% FabArray::setDomainBndry() 41 0.00763 0.01068 0.01327 0.38% Castro::apply_source_to_state() 20 0.01059 0.0121 0.01297 0.37% FabArray::Saxpy() 20 0.01053 0.01204 0.01291 0.37% Castro::initMFs() 1 0.006397 0.007608 0.009998 0.29% Castro::construct_old_source() 50 0.00651 0.008868 0.009451 0.27% Castro::construct_old_gravity_source() 10 0.006449 0.0088 0.009375 0.27% Castro::computeNewDt() 9 0.008668 0.008678 0.008692 0.25% AmrLevel::AmrLevel(dm) 1 0.005363 0.006468 0.007828 0.23% Other 260 0.02078 0.02509 0.02963 0.86% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 39 B 56 B 100 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8654 KiB 8667 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6718 KiB 6728 KiB 6730 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7128 KiB 7139 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4474 KiB 4501 KiB 4510 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 208 KiB 251 KiB 266 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 18 KiB 25 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2766 KiB 2771 KiB 2772 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 234 KiB 239 KiB 247 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 54 KiB 60 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.02-15-gf8d7483dc43c) finalized