Initializing AMReX (25.02-15-gf8d7483dc43c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.02-15-gf8d7483dc43c) initialized Starting run at 06:20:04 UTC on 2025-02-18. Successfully read inputs file ... Castro git describe: 25.02-4-g82feac296 AMReX git describe: 25.02-15-gf8d7483dc Microphysics git describe: 25.02-19-gd90e290f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015218313 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.331039027 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.422050946 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.342729427 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.313081626 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.313189834 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.312159971 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.312621099 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.314253274 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.313054285 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.33630424 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009407106 seconds Ending run at 06:20:09 UTC on 2025-02-18. Run time = 4.438145271 Run time without initialization = 3.325255254 Average number of zones advanced per microsecond: 0.788 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 4.4367 ... 4.4377 ... 4.4382 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1135 2.2518 2.3253 52.39% Amr::InitAmr() 1 0.0001933 0.1159 0.9254 20.85% DistributionMapping::LeastUsedCPUs() 1 9.119e-05 0.8096 0.9254 20.85% check_for_negative_density() 10 0.1248 0.2003 0.3436 7.74% Gravity::make_radial_gravity() 21 0.2999 0.3148 0.3381 7.62% Castro::initData() 1 0.03815 0.075 0.1221 2.75% Castro::estTimeStep() 21 0.04198 0.07939 0.1169 2.63% FabArray::ParallelCopy_finish() 41 0.04369 0.06337 0.1013 2.28% amrex::Copy() 193 0.04885 0.07216 0.08259 1.86% FabArray::setVal() 143 0.04038 0.0546 0.06192 1.40% Castro::normalize_species() 62 0.04579 0.04802 0.05146 1.16% Castro::reset_internal_energy(Fab) 1008 0.04541 0.04774 0.04966 1.12% FabArray::ParallelCopy_nowait() 41 0.02983 0.0401 0.04611 1.04% StateData::FillBoundary(geom) 41 0.02901 0.03266 0.03607 0.81% FillPatchIterator::Initialize 41 0.02805 0.03287 0.03587 0.81% Gravity::interpolate_monopole_grav() 21 0.0269 0.02722 0.02751 0.62% Castro::construct_new_gravity_source() 10 0.01899 0.02168 0.02309 0.52% Castro::computeTemp() 63 0.01817 0.01869 0.01928 0.43% Castro::initialize_do_advance() 10 0.01205 0.01527 0.01724 0.39% VisMF::Write(FabArray) 2 0.009146 0.01014 0.01455 0.33% FabArray::setDomainBndry() 41 0.007529 0.01112 0.01416 0.32% Amr::writePlotFile() 2 0.008177 0.01224 0.01361 0.31% FabArray::Saxpy() 20 0.006947 0.01043 0.01285 0.29% MultiFab::contains_nan() 20 0.01006 0.01068 0.01136 0.26% StateData::define() 4 0.005205 0.006122 0.01051 0.24% Castro::initialize_advance() 10 0.005514 0.007812 0.009835 0.22% Castro::initMFs() 1 0.006385 0.007023 0.009415 0.21% Castro::construct_new_source() 50 0.004657 0.005581 0.006157 0.14% main() 1 0.003388 0.004372 0.004916 0.11% Gravity::get_new_grav_vector() 11 0.002914 0.003421 0.004054 0.09% Amr::coarseTimeStep() 10 0.001298 0.002651 0.003921 0.09% Gravity::get_old_grav_vector() 10 0.001545 0.002069 0.00273 0.06% Castro::finalize_do_advance() 10 0.0005549 0.0008444 0.0009788 0.02% AmrLevel::FillPatch() 41 0.0007105 0.0008069 0.0008749 0.02% Amr::timeStep() 10 0.0001489 0.0002133 0.000538 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000275 0.0002861 0.0002985 0.01% Castro::do_advance_ctu() 10 0.0001329 0.0001596 0.0001783 0.00% Castro::clean_state() 62 0.0001288 0.0001502 0.0001765 0.00% StateDataPhysBCFunct::() 41 0.0001137 0.000124 0.000137 0.00% FillPatchIterator::FillFromLevel0() 41 8.131e-05 0.0001005 0.0001094 0.00% FabArray::ParallelCopy() 41 7.765e-05 9.196e-05 0.0001064 0.00% Amr::defBaseLevel() 1 5.107e-05 6.337e-05 0.0001021 0.00% Castro::do_old_sources() 10 5.959e-05 8.29e-05 0.0001005 0.00% Castro::Castro() 1 4.874e-05 6.694e-05 8.643e-05 0.00% Amr::FinalizeInit() 1 3.772e-06 1.424e-05 8.264e-05 0.00% FillPatchSingleLevel 41 5.796e-05 6.401e-05 6.969e-05 0.00% Castro::apply_source_to_state() 20 2.968e-05 4.531e-05 6.637e-05 0.00% Castro::do_new_sources() 10 4.279e-05 5.666e-05 6.384e-05 0.00% Castro::advance() 10 3.612e-05 4.843e-05 6.379e-05 0.00% Castro::subcycle_advance_ctu() 10 3.471e-05 4.496e-05 5.47e-05 0.00% Castro::construct_old_gravity() 10 3.001e-05 3.699e-05 4.196e-05 0.00% Castro::construct_new_gravity() 10 2.782e-05 3.362e-05 4.18e-05 0.00% Castro::check_for_nan() 20 2.493e-05 2.94e-05 4.064e-05 0.00% Castro::expand_state() 10 1.512e-05 2.408e-05 3.216e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.148e-05 1.527e-05 3.13e-05 0.00% DistributionMapping::SFCProcessorMapDoIt() 1 5.082e-06 9.063e-06 2.54e-05 0.00% Castro::post_timestep() 10 1.329e-05 1.604e-05 1.829e-05 0.00% Castro::post_init() 1 1.342e-05 1.592e-05 1.817e-05 0.00% Amr::InitializeInit() 1 2.85e-06 4.945e-06 1.538e-05 0.00% Castro::computeNewDt() 9 1.011e-05 1.056e-05 1.122e-05 0.00% Castro::computeInitialDt() 2 3.148e-06 4.004e-06 6.043e-06 0.00% Amr::init() 1 1.773e-06 2.256e-06 2.878e-06 0.00% Amr::initialInit() 1 1.52e-06 2.066e-06 2.762e-06 0.00% Other 313 0.01492 0.01933 0.0224 0.50% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.437 4.438 4.438 100.00% Amr::coarseTimeStep() 10 3.311 3.311 3.311 74.60% Amr::timeStep() 10 3.296 3.298 3.299 74.33% Castro::advance() 10 3.28 3.281 3.281 73.94% Castro::subcycle_advance_ctu() 10 3.213 3.219 3.23 72.78% Castro::do_advance_ctu() 10 3.213 3.219 3.23 72.78% Castro::construct_ctu_hydro_source() 10 2.471 2.474 2.478 55.83% Amr::init() 1 0.1874 0.9968 1.113 25.07% Amr::initialInit() 1 0.172 0.9813 1.097 24.72% Amr::InitializeInit() 1 0.08066 0.9058 1.068 24.06% Amr::defBaseLevel() 1 0.08065 0.9058 1.068 24.06% Amr::InitAmr() 1 0.0001961 0.1159 0.9254 20.85% DistributionMapping::SFCProcessorMapDoIt() 1 0.0001318 0.8096 0.9254 20.85% DistributionMapping::LeastUsedCPUs() 1 9.119e-05 0.8096 0.9254 20.85% Gravity::make_radial_gravity() 21 0.3173 0.331 0.3492 7.87% check_for_negative_density() 10 0.1248 0.2003 0.3436 7.74% Gravity::get_new_grav_vector() 11 0.2206 0.2214 0.2233 5.03% AmrLevel::FillPatch() 41 0.206 0.2106 0.2205 4.97% Castro::construct_old_gravity() 10 0.1829 0.1931 0.2099 4.73% Gravity::get_old_grav_vector() 10 0.1822 0.1925 0.2094 4.72% FillPatchIterator::Initialize 41 0.1729 0.1806 0.1999 4.50% Castro::construct_new_gravity() 10 0.1958 0.1965 0.1982 4.46% Castro::initialize_do_advance() 10 0.1609 0.1654 0.1692 3.81% FillPatchIterator::FillFromLevel0() 41 0.1256 0.1366 0.163 3.67% FillPatchSingleLevel 41 0.1255 0.1365 0.1629 3.67% FabArray::ParallelCopy() 41 0.08997 0.1036 0.1313 2.96% Castro::initData() 1 0.04229 0.07904 0.1259 2.84% Castro::clean_state() 62 0.1158 0.1197 0.1255 2.83% Castro::estTimeStep() 21 0.04198 0.07939 0.1169 2.63% Castro::expand_state() 10 0.1115 0.1135 0.1148 2.59% Amr::FinalizeInit() 1 0.02888 0.07547 0.1131 2.55% FabArray::ParallelCopy_finish() 41 0.04369 0.06337 0.1013 2.28% Castro::do_old_sources() 10 0.08881 0.09615 0.09953 2.24% Castro::computeInitialDt() 2 0.002585 0.04916 0.08696 1.96% amrex::Copy() 193 0.04885 0.07216 0.08259 1.86% Castro::computeTemp() 63 0.0639 0.06671 0.06923 1.56% Castro::initialize_advance() 10 0.04714 0.05856 0.06483 1.46% Castro::do_new_sources() 10 0.05084 0.05926 0.06301 1.42% FabArray::setVal() 143 0.04038 0.0546 0.06192 1.40% Castro::normalize_species() 62 0.04579 0.04802 0.05146 1.16% Castro::reset_internal_energy(MultiFab) 63 0.0457 0.04802 0.04995 1.13% Castro::reset_internal_energy(Fab) 1008 0.04541 0.04774 0.04966 1.12% FabArray::ParallelCopy_nowait() 41 0.02994 0.04018 0.04619 1.04% StateDataPhysBCFunct::() 41 0.02913 0.03279 0.0362 0.82% StateData::FillBoundary(geom) 41 0.02901 0.03266 0.03607 0.81% Castro::finalize_do_advance() 10 0.01701 0.02173 0.03059 0.69% Castro::construct_new_source() 50 0.02365 0.02726 0.0291 0.66% Gravity::interpolate_monopole_grav() 21 0.0269 0.02722 0.02751 0.62% Castro::post_init() 1 0.02549 0.02575 0.02603 0.59% Amr::writePlotFile() 2 0.02489 0.02508 0.02523 0.57% Castro::construct_new_gravity_source() 10 0.01899 0.02168 0.02309 0.52% Castro::post_timestep() 10 0.01599 0.01665 0.01749 0.39% VisMF::Write(FabArray) 2 0.009146 0.01014 0.01455 0.33% FabArray::setDomainBndry() 41 0.007529 0.01112 0.01416 0.32% Castro::Castro() 1 0.009929 0.01092 0.01315 0.30% Castro::apply_source_to_state() 20 0.006977 0.01048 0.0129 0.29% FabArray::Saxpy() 20 0.006947 0.01043 0.01285 0.29% Castro::check_for_nan() 20 0.01008 0.01071 0.01139 0.26% MultiFab::contains_nan() 20 0.01006 0.01068 0.01136 0.26% AmrLevel::AmrLevel(dm) 1 0.005218 0.006137 0.01054 0.24% StateData::define() 4 0.005205 0.006122 0.01051 0.24% Castro::initMFs() 1 0.006385 0.007023 0.009415 0.21% Castro::computeNewDt() 9 0.009348 0.009361 0.009377 0.21% Other 313 0.02397 0.03173 0.03701 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 36 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 10 MiB 11 MiB 11 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 6844 KiB 6863 KiB 6867 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 5343 KiB 5347 KiB 5348 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 5644 KiB 5652 KiB 5654 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 3618 KiB 3624 KiB 3636 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 173 KiB 177 KiB 183 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 11 KiB 13 KiB 17 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2214 KiB 2217 KiB 2218 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 182 KiB 190 KiB 200 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 30 KiB 34 KiB 43 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 1603 KiB 1606 KiB 1607 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 63 KiB 64 KiB 64 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 52 KiB 55 KiB 60 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.02-15-gf8d7483dc43c) finalized