Initializing AMReX (25.02-16-gb364becad939)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.02-16-gb364becad939) initialized Starting run at 06:20:17 UTC on 2025-02-19. Successfully read inputs file ... Castro git describe: 25.02-4-g82feac296 AMReX git describe: 25.02-16-gb364becad Microphysics git describe: 25.02-21-g444d983c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014898129 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.349946018 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.359237605 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.334999424 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.333390613 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.415959307 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.38004256 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.382188531 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.343005909 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.33884324 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.347321833 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.009853868 seconds Ending run at 06:20:21 UTC on 2025-02-19. Run time = 3.779951671 Run time without initialization = 3.601051883 Average number of zones advanced per microsecond: 0.728 Average number of zones advanced per microsecond per rank: 0.091 TinyProfiler total time across processes [min...avg...max]: 3.7771 ... 3.7794 ... 3.7800 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1680 2.3119 2.4352 64.42% check_for_negative_density() 10 0.1325 0.2618 0.4134 10.94% Gravity::make_radial_gravity() 21 0.3198 0.3331 0.3659 9.68% Castro::estTimeStep() 21 0.03544 0.08336 0.1207 3.19% FabArray::ParallelCopy_finish() 41 0.05911 0.07755 0.1193 3.15% Castro::initData() 1 0.03708 0.07194 0.1147 3.04% amrex::Copy() 193 0.07067 0.1016 0.1089 2.88% FabArray::setVal() 143 0.07227 0.07648 0.08298 2.20% FabArray::ParallelCopy_nowait() 41 0.03631 0.05006 0.05381 1.42% Castro::reset_internal_energy(Fab) 1008 0.04569 0.04916 0.05236 1.39% Castro::normalize_species() 62 0.04618 0.04833 0.05054 1.34% FillPatchIterator::Initialize 41 0.033 0.04185 0.04798 1.27% StateData::FillBoundary(geom) 41 0.03274 0.03698 0.04209 1.11% Castro::construct_new_gravity_source() 10 0.02174 0.0262 0.02843 0.75% Gravity::interpolate_monopole_grav() 21 0.02698 0.02752 0.02832 0.75% Castro::initialize_do_advance() 10 0.01957 0.02105 0.02225 0.59% Castro::computeTemp() 63 0.01817 0.01944 0.02038 0.54% FabArray::setDomainBndry() 41 0.01075 0.01542 0.0185 0.49% FabArray::Saxpy() 20 0.009037 0.01503 0.01701 0.45% MultiFab::contains_nan() 20 0.01104 0.01333 0.01572 0.42% Amr::writePlotFile() 2 0.008573 0.01128 0.01301 0.34% Castro::initialize_advance() 10 0.01034 0.01156 0.01293 0.34% VisMF::Write(FabArray) 2 0.009589 0.01034 0.01279 0.34% Castro::construct_old_gravity_source() 10 0.006273 0.01123 0.01243 0.33% Amr::coarseTimeStep() 10 0.001449 0.003153 0.008449 0.22% Castro::initMFs() 1 0.006575 0.007089 0.008445 0.22% Castro::construct_new_source() 50 0.004973 0.00672 0.007128 0.19% main() 1 0.00293 0.005165 0.005757 0.15% Gravity::get_new_grav_vector() 11 0.003255 0.004228 0.004871 0.13% Gravity::get_old_grav_vector() 10 0.001798 0.002741 0.003514 0.09% AmrLevel::FillPatch() 41 0.001177 0.00131 0.001383 0.04% Castro::finalize_do_advance() 10 0.001197 0.001234 0.001257 0.03% Castro::reset_internal_energy(MultiFab) 63 0.0003056 0.0003737 0.0006818 0.02% Amr::timeStep() 10 0.0001504 0.0002084 0.0004388 0.01% Castro::do_advance_ctu() 10 0.0001853 0.0002141 0.0002554 0.01% Castro::clean_state() 62 0.0001622 0.0001894 0.0002076 0.01% StateDataPhysBCFunct::() 41 0.0001364 0.0001648 0.000187 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001289 0.0001369 0.0001608 0.00% FabArray::ParallelCopy() 41 0.0001054 0.0001189 0.000134 0.00% Castro::do_old_sources() 10 0.0001028 0.0001156 0.0001321 0.00% Castro::construct_old_source() 50 7.357e-05 9.048e-05 0.0001117 0.00% FillPatchSingleLevel 41 7.769e-05 8.372e-05 9.225e-05 0.00% Castro::do_new_sources() 10 5.971e-05 7.804e-05 9.112e-05 0.00% Amr::FinalizeInit() 1 3.836e-06 1.527e-05 8.949e-05 0.00% Castro::Castro() 1 3.999e-05 7.046e-05 8.868e-05 0.00% Castro::construct_old_gravity() 10 4.006e-05 5.983e-05 8.845e-05 0.00% Castro::apply_source_to_state() 20 5.281e-05 6.327e-05 7.424e-05 0.00% Castro::subcycle_advance_ctu() 10 4.774e-05 6.319e-05 7.28e-05 0.00% Castro::advance() 10 4.837e-05 5.968e-05 6.703e-05 0.00% Amr::defBaseLevel() 1 4.585e-05 5.485e-05 5.918e-05 0.00% Castro::expand_state() 10 1.936e-05 3.541e-05 5.513e-05 0.00% Castro::computeNewDt() 9 1.018e-05 1.671e-05 5.455e-05 0.00% Castro::construct_new_gravity() 10 3.596e-05 4.064e-05 4.432e-05 0.00% Castro::check_for_nan() 20 3.159e-05 3.426e-05 3.722e-05 0.00% Castro::post_init() 1 1.502e-05 1.722e-05 2.08e-05 0.00% Castro::post_timestep() 10 1.562e-05 1.729e-05 1.961e-05 0.00% Amr::InitializeInit() 1 2.417e-06 3.047e-06 5.085e-06 0.00% Castro::computeInitialDt() 2 2.985e-06 3.604e-06 4.002e-06 0.00% Amr::init() 1 1.763e-06 2.283e-06 2.978e-06 0.00% Amr::initialInit() 1 1.637e-06 1.992e-06 2.636e-06 0.00% Other 261 0.01631 0.01896 0.0212 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.777 3.779 3.78 100.00% Amr::coarseTimeStep() 10 3.585 3.585 3.585 94.85% Amr::timeStep() 10 3.564 3.566 3.567 94.37% Castro::advance() 10 3.548 3.549 3.55 93.91% Castro::subcycle_advance_ctu() 10 3.467 3.469 3.474 91.91% Castro::do_advance_ctu() 10 3.467 3.469 3.474 91.91% Castro::construct_ctu_hydro_source() 10 2.592 2.597 2.604 68.88% check_for_negative_density() 10 0.1325 0.2618 0.4134 10.94% Gravity::make_radial_gravity() 21 0.3409 0.3547 0.3792 10.03% AmrLevel::FillPatch() 41 0.2542 0.2669 0.2761 7.30% Gravity::get_new_grav_vector() 11 0.2365 0.2384 0.2401 6.35% Castro::construct_old_gravity() 10 0.2038 0.2123 0.2329 6.16% FillPatchIterator::Initialize 41 0.2104 0.2225 0.2327 6.16% Gravity::get_old_grav_vector() 10 0.2027 0.2113 0.2318 6.13% Castro::initialize_do_advance() 10 0.1997 0.2168 0.2281 6.04% Castro::construct_new_gravity() 10 0.2134 0.215 0.2165 5.73% FillPatchIterator::FillFromLevel0() 41 0.1536 0.1652 0.1889 5.00% FillPatchSingleLevel 41 0.1535 0.1651 0.1887 4.99% Amr::init() 1 0.1784 0.1785 0.1786 4.72% Castro::expand_state() 10 0.1433 0.1551 0.1638 4.33% Amr::initialInit() 1 0.1633 0.1634 0.1635 4.33% FabArray::ParallelCopy() 41 0.1123 0.1278 0.1558 4.12% Amr::InitializeInit() 1 0.05713 0.09262 0.1364 3.61% Amr::defBaseLevel() 1 0.05713 0.09261 0.1364 3.61% Castro::clean_state() 62 0.1172 0.1232 0.1295 3.43% Castro::estTimeStep() 21 0.03544 0.08336 0.1207 3.19% Castro::do_old_sources() 10 0.1114 0.1165 0.1206 3.19% FabArray::ParallelCopy_finish() 41 0.05911 0.07755 0.1193 3.15% Castro::initData() 1 0.041 0.07572 0.1183 3.13% amrex::Copy() 193 0.07067 0.1016 0.1089 2.88% Amr::FinalizeInit() 1 0.02714 0.07078 0.1063 2.81% FabArray::setVal() 143 0.07227 0.07648 0.08298 2.20% Castro::computeInitialDt() 2 0.002175 0.0459 0.08141 2.15% Castro::initialize_advance() 10 0.07064 0.07564 0.07824 2.07% Castro::do_new_sources() 10 0.05912 0.07043 0.07676 2.03% Castro::computeTemp() 63 0.06454 0.06897 0.07308 1.93% FabArray::ParallelCopy_nowait() 41 0.03641 0.05016 0.05389 1.43% Castro::reset_internal_energy(MultiFab) 63 0.04637 0.04953 0.0527 1.39% Castro::reset_internal_energy(Fab) 1008 0.04569 0.04916 0.05236 1.39% Castro::normalize_species() 62 0.04618 0.04833 0.05054 1.34% StateDataPhysBCFunct::() 41 0.03288 0.03714 0.04226 1.12% StateData::FillBoundary(geom) 41 0.03274 0.03698 0.04209 1.11% Castro::finalize_do_advance() 10 0.01712 0.02355 0.03562 0.94% Castro::construct_new_source() 50 0.02672 0.03292 0.0355 0.94% Castro::construct_new_gravity_source() 10 0.02174 0.0262 0.02843 0.75% Gravity::interpolate_monopole_grav() 21 0.02698 0.02752 0.02832 0.75% Amr::writePlotFile() 2 0.02499 0.02509 0.02524 0.67% Castro::post_init() 1 0.02416 0.02431 0.02442 0.65% FabArray::setDomainBndry() 41 0.01075 0.01542 0.0185 0.49% Castro::post_timestep() 10 0.01585 0.01679 0.01782 0.47% Castro::apply_source_to_state() 20 0.009089 0.01509 0.01707 0.45% FabArray::Saxpy() 20 0.009037 0.01503 0.01701 0.45% Castro::check_for_nan() 20 0.01107 0.01336 0.01576 0.42% MultiFab::contains_nan() 20 0.01104 0.01333 0.01572 0.42% Castro::computeNewDt() 9 0.01187 0.01517 0.01566 0.41% VisMF::Write(FabArray) 2 0.009589 0.01034 0.01279 0.34% Castro::construct_old_source() 50 0.006347 0.01132 0.01252 0.33% Castro::construct_old_gravity_source() 10 0.006273 0.01123 0.01243 0.33% Castro::Castro() 1 0.01046 0.01093 0.01171 0.31% Castro::initMFs() 1 0.006575 0.007089 0.008445 0.22% Other 261 0.02624 0.03051 0.03462 0.92% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 31 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8666 KiB 8673 KiB 8676 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6792 KiB 6797 KiB 6798 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7135 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4581 KiB 4585 KiB 4592 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 259 KiB 271 KiB 283 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2813 KiB 2816 KiB 2817 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 230 KiB 239 KiB 255 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 46 KiB 54 KiB 62 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 81 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 71 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.02-16-gb364becad939) finalized