Initializing AMReX (25.02-17-g28a1e19b3b27)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.02-17-g28a1e19b3b27) initialized Starting run at 06:21:41 UTC on 2025-02-20. Successfully read inputs file ... Castro git describe: 25.02-4-g82feac296 AMReX git describe: 25.02-17-g28a1e19b3 Microphysics git describe: 25.02-21-g444d983c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.021524212 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.432401438 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.390189399 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.337775222 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.362468019 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.34986456 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.332108593 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.316044484 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.316966266 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.34470617 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.320215668 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.25014063 seconds Ending run at 06:21:45 UTC on 2025-02-20. Run time = 3.977231329 Run time without initialization = 3.760187443 Average number of zones advanced per microsecond: 0.697 Average number of zones advanced per microsecond per rank: 0.087 TinyProfiler total time across processes [min...avg...max]: 3.9749 ... 3.9764 ... 3.9773 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1564 2.3561 2.4550 61.72% check_for_negative_density() 10 0.06695 0.171 0.3793 9.54% Gravity::make_radial_gravity() 21 0.3138 0.3259 0.3506 8.81% Amr::writePlotFile() 2 0.251 0.2551 0.2563 6.44% Castro::estTimeStep() 21 0.04146 0.08346 0.1276 3.21% Castro::initData() 1 0.03725 0.07985 0.1245 3.13% amrex::Copy() 193 0.06109 0.08906 0.09902 2.49% FabArray::setVal() 143 0.06601 0.08896 0.09784 2.46% FabArray::ParallelCopy_finish() 41 0.04376 0.05844 0.09572 2.41% Castro::reset_internal_energy(Fab) 1008 0.04881 0.05202 0.05535 1.39% Castro::normalize_species() 62 0.0469 0.04853 0.05134 1.29% FabArray::ParallelCopy_nowait() 41 0.03517 0.04466 0.04856 1.22% FillPatchIterator::Initialize 41 0.03642 0.03841 0.04049 1.02% StateData::FillBoundary(geom) 41 0.03119 0.03522 0.03845 0.97% Castro::construct_new_gravity_source() 10 0.02452 0.02885 0.03104 0.78% Gravity::interpolate_monopole_grav() 21 0.02707 0.02765 0.02833 0.71% Castro::initialize_do_advance() 10 0.01979 0.0217 0.02614 0.66% Castro::computeTemp() 63 0.01887 0.02 0.02141 0.54% FabArray::Saxpy() 20 0.01371 0.01776 0.01978 0.50% Castro::initialize_advance() 10 0.01039 0.01556 0.01783 0.45% VisMF::Write(FabArray) 2 0.01169 0.01283 0.01748 0.44% FabArray::setDomainBndry() 41 0.00934 0.01318 0.01634 0.41% Castro::initMFs() 1 0.008749 0.01157 0.01403 0.35% Castro::construct_old_gravity_source() 10 0.008686 0.01266 0.01396 0.35% MultiFab::contains_nan() 20 0.01044 0.0126 0.01373 0.35% StateData::define() 4 0.007243 0.009332 0.01101 0.28% Castro::construct_new_source() 50 0.005406 0.007373 0.008109 0.20% Amr::coarseTimeStep() 10 0.003422 0.005449 0.007385 0.19% main() 1 0.0043 0.005821 0.006761 0.17% Gravity::get_new_grav_vector() 11 0.003455 0.004207 0.004932 0.12% Gravity::get_old_grav_vector() 10 0.00172 0.002254 0.002718 0.07% AmrLevel::FillPatch() 41 0.000901 0.001185 0.001535 0.04% Castro::finalize_do_advance() 10 0.001237 0.001373 0.001444 0.04% Amr::timeStep() 10 0.0001472 0.000206 0.0004818 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000315 0.00033 0.0003573 0.01% Castro::do_advance_ctu() 10 0.0001678 0.0002105 0.0002501 0.01% Castro::clean_state() 62 0.0001685 0.0001864 0.0002139 0.01% Castro::do_old_sources() 10 9.08e-05 0.0001148 0.0001584 0.00% StateDataPhysBCFunct::() 41 0.0001252 0.0001403 0.0001526 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001185 0.0001257 0.0001376 0.00% FabArray::ParallelCopy() 41 9.819e-05 0.0001042 0.000115 0.00% Castro::Castro() 1 4.399e-05 8.032e-05 0.0001137 0.00% Castro::construct_old_source() 50 7.164e-05 8.682e-05 0.0001022 0.00% Castro::apply_source_to_state() 20 5.328e-05 6.448e-05 9.559e-05 0.00% Amr::defBaseLevel() 1 5.947e-05 6.787e-05 8.404e-05 0.00% Amr::FinalizeInit() 1 4.914e-06 1.605e-05 8.326e-05 0.00% Castro::do_new_sources() 10 5.626e-05 7.1e-05 8.136e-05 0.00% FillPatchSingleLevel 41 6.516e-05 7.392e-05 8.049e-05 0.00% Castro::subcycle_advance_ctu() 10 5.915e-05 6.46e-05 7.617e-05 0.00% Castro::advance() 10 5.039e-05 5.801e-05 7.011e-05 0.00% Castro::construct_old_gravity() 10 3.486e-05 4.404e-05 5.491e-05 0.00% Castro::construct_new_gravity() 10 3.559e-05 4.021e-05 4.674e-05 0.00% Castro::check_for_nan() 20 2.64e-05 3.145e-05 3.517e-05 0.00% Castro::expand_state() 10 2.563e-05 2.901e-05 3.327e-05 0.00% Castro::post_timestep() 10 1.538e-05 1.93e-05 2.535e-05 0.00% Castro::post_init() 1 1.585e-05 1.939e-05 2.509e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.595e-06 1.393e-05 1.918e-05 0.00% Amr::InitializeInit() 1 3.246e-06 4.206e-06 6.783e-06 0.00% Castro::computeInitialDt() 2 4.384e-06 4.944e-06 5.573e-06 0.00% Amr::init() 1 1.63e-06 2.631e-06 3.387e-06 0.00% Amr::initialInit() 1 1.804e-06 2.366e-06 3.114e-06 0.00% Other 265 0.01318 0.01601 0.01835 0.46% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.975 3.976 3.977 100.00% Amr::coarseTimeStep() 10 3.503 3.503 3.503 88.08% Amr::timeStep() 10 3.484 3.486 3.488 87.71% Castro::advance() 10 3.468 3.469 3.47 87.24% Castro::subcycle_advance_ctu() 10 3.364 3.372 3.392 85.29% Castro::do_advance_ctu() 10 3.364 3.372 3.392 85.28% Castro::construct_ctu_hydro_source() 10 2.545 2.551 2.558 64.32% check_for_negative_density() 10 0.06695 0.171 0.3793 9.54% Gravity::make_radial_gravity() 21 0.3337 0.3442 0.3644 9.16% Amr::writePlotFile() 2 0.2719 0.2722 0.2724 6.85% Gravity::get_new_grav_vector() 11 0.2298 0.233 0.2347 5.90% AmrLevel::FillPatch() 41 0.2154 0.2256 0.2329 5.86% Castro::construct_old_gravity() 10 0.1968 0.204 0.2179 5.48% Gravity::get_old_grav_vector() 10 0.1961 0.2034 0.2173 5.46% Amr::init() 1 0.2164 0.2166 0.2167 5.45% FillPatchIterator::Initialize 41 0.1792 0.1905 0.2094 5.27% Castro::construct_new_gravity() 10 0.2002 0.2031 0.205 5.15% Amr::initialInit() 1 0.1945 0.1946 0.1948 4.90% Castro::initialize_do_advance() 10 0.1813 0.1873 0.1928 4.85% FillPatchIterator::FillFromLevel0() 41 0.1277 0.1389 0.1626 4.09% FillPatchSingleLevel 41 0.1275 0.1387 0.1625 4.09% Amr::InitializeInit() 1 0.06223 0.1106 0.1602 4.03% Amr::defBaseLevel() 1 0.06223 0.1106 0.1602 4.03% Castro::clean_state() 62 0.1218 0.1267 0.1323 3.33% Amr::FinalizeInit() 1 0.03457 0.08404 0.1323 3.33% FabArray::ParallelCopy() 41 0.09143 0.1033 0.1311 3.30% Castro::expand_state() 10 0.1201 0.1255 0.1297 3.26% Castro::initData() 1 0.04161 0.0841 0.1289 3.24% Castro::estTimeStep() 21 0.04146 0.08346 0.1276 3.21% Castro::do_old_sources() 10 0.109 0.1111 0.1136 2.86% Castro::computeInitialDt() 2 0.002667 0.05233 0.1007 2.53% Castro::initialize_advance() 10 0.07196 0.09234 0.1004 2.53% amrex::Copy() 193 0.06109 0.08906 0.09902 2.49% FabArray::setVal() 143 0.06601 0.08896 0.09784 2.46% FabArray::ParallelCopy_finish() 41 0.04376 0.05844 0.09572 2.41% Castro::do_new_sources() 10 0.06007 0.07598 0.08347 2.10% Castro::computeTemp() 63 0.068 0.07235 0.0771 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04912 0.05235 0.05569 1.40% Castro::reset_internal_energy(Fab) 1008 0.04881 0.05202 0.05535 1.39% Castro::normalize_species() 62 0.0469 0.04853 0.05134 1.29% FabArray::ParallelCopy_nowait() 41 0.03529 0.04476 0.04864 1.22% Castro::finalize_do_advance() 10 0.01349 0.02231 0.04006 1.01% Castro::construct_new_source() 50 0.02992 0.03622 0.03893 0.98% StateDataPhysBCFunct::() 41 0.03131 0.03537 0.03858 0.97% StateData::FillBoundary(geom) 41 0.03119 0.03522 0.03845 0.97% Castro::post_init() 1 0.03115 0.03131 0.03149 0.79% Castro::construct_new_gravity_source() 10 0.02452 0.02885 0.03104 0.78% Gravity::interpolate_monopole_grav() 21 0.02707 0.02765 0.02833 0.71% Castro::Castro() 1 0.01304 0.01684 0.02026 0.51% Castro::apply_source_to_state() 20 0.01377 0.01783 0.01986 0.50% FabArray::Saxpy() 20 0.01371 0.01776 0.01978 0.50% Castro::post_timestep() 10 0.01635 0.0173 0.0187 0.47% VisMF::Write(FabArray) 2 0.01169 0.01283 0.01748 0.44% FabArray::setDomainBndry() 41 0.00934 0.01318 0.01634 0.41% Castro::construct_old_source() 50 0.008757 0.01275 0.01406 0.35% Castro::initMFs() 1 0.008749 0.01157 0.01403 0.35% Castro::construct_old_gravity_source() 10 0.008686 0.01266 0.01396 0.35% Castro::check_for_nan() 20 0.01047 0.01263 0.01376 0.35% MultiFab::contains_nan() 20 0.01044 0.0126 0.01373 0.35% AmrLevel::AmrLevel(dm) 1 0.007251 0.009346 0.01103 0.28% StateData::define() 4 0.007243 0.009332 0.01101 0.28% Other 265 0.02874 0.03292 0.03645 0.92% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 42 B 66 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 11 MiB 13 MiB 13 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8643 KiB 8658 KiB 8668 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6735 KiB 6740 KiB 6742 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7138 KiB 7140 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4226 KiB 4235 KiB 4256 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 202 KiB 212 KiB 220 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 18 KiB 20 KiB 25 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2612 KiB 2616 KiB 2617 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 213 KiB 220 KiB 233 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 34 KiB 39 KiB 49 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2024 KiB 2027 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 74 KiB 75 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 63 KiB 65 KiB 70 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.02-17-g28a1e19b3b27) finalized