Initializing AMReX (25.02-17-g28a1e19b3b27)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.02-17-g28a1e19b3b27) initialized Starting run at 06:19:05 UTC on 2025-02-21. Successfully read inputs file ... Castro git describe: 25.02-4-g82feac296 AMReX git describe: 25.02-17-g28a1e19b3 Microphysics git describe: 25.02-21-g444d983c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015513027 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.361966456 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.33332439 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.322806537 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.320334198 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.371457237 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.3029486 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.294953155 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.300530036 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.297100725 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.296241354 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.0076212 seconds Ending run at 06:19:08 UTC on 2025-02-21. Run time = 3.404180034 Run time without initialization = 3.214060502 Average number of zones advanced per microsecond: 0.816 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.4034 ... 3.4039 ... 3.4042 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1854 2.2126 2.2702 66.69% Gravity::make_radial_gravity() 21 0.2947 0.3025 0.3125 9.18% check_for_negative_density() 10 0.02273 0.09377 0.1221 3.59% Castro::initData() 1 0.03966 0.07455 0.1216 3.57% Castro::estTimeStep() 21 0.02654 0.07565 0.1068 3.14% amrex::Copy() 193 0.08231 0.08881 0.09939 2.92% FabArray::setVal() 143 0.0688 0.07299 0.07688 2.26% FabArray::ParallelCopy_finish() 41 0.04007 0.05602 0.06798 2.00% Castro::normalize_species() 62 0.04578 0.04801 0.05111 1.50% Castro::reset_internal_energy(Fab) 1008 0.04651 0.04844 0.0495 1.45% FabArray::ParallelCopy_nowait() 41 0.04219 0.04327 0.04442 1.30% StateData::FillBoundary(geom) 41 0.0302 0.03343 0.03755 1.10% FillPatchIterator::Initialize 41 0.03026 0.03496 0.03732 1.10% Gravity::interpolate_monopole_grav() 21 0.02669 0.02737 0.02893 0.85% Castro::construct_new_gravity_source() 10 0.02326 0.02499 0.02711 0.80% Castro::initialize_do_advance() 10 0.01676 0.01861 0.01999 0.59% Castro::computeTemp() 63 0.01864 0.01897 0.01959 0.58% Castro::initialize_advance() 10 0.011 0.01292 0.01465 0.43% FabArray::setDomainBndry() 41 0.008194 0.01229 0.01462 0.43% FabArray::Saxpy() 20 0.01212 0.01334 0.01383 0.41% VisMF::Write(FabArray) 2 0.009456 0.01003 0.01274 0.37% MultiFab::contains_nan() 20 0.01079 0.01156 0.01259 0.37% Amr::writePlotFile() 2 0.007477 0.01021 0.01081 0.32% Castro::construct_old_gravity_source() 10 0.009629 0.009955 0.01016 0.30% Castro::initMFs() 1 0.006478 0.006967 0.007559 0.22% Castro::construct_new_source() 50 0.006331 0.006608 0.006827 0.20% main() 1 0.003322 0.003825 0.004115 0.12% Gravity::get_new_grav_vector() 11 0.003237 0.003649 0.004017 0.12% Gravity::get_old_grav_vector() 10 0.001912 0.00239 0.003113 0.09% Amr::coarseTimeStep() 10 0.001558 0.002009 0.002942 0.09% Castro::finalize_do_advance() 10 0.001172 0.001236 0.001276 0.04% AmrLevel::FillPatch() 41 0.000879 0.0009253 0.001017 0.03% Castro::reset_internal_energy(MultiFab) 63 0.0004109 0.0004301 0.0004757 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001114 0.0002396 0.0004435 0.01% Amr::timeStep() 10 0.0001387 0.0001893 0.0004245 0.01% Castro::do_advance_ctu() 10 0.0001494 0.0001767 0.0002056 0.01% Castro::clean_state() 62 0.000152 0.0001673 0.0001806 0.01% StateDataPhysBCFunct::() 41 0.0001137 0.0001316 0.0001645 0.00% FabArray::ParallelCopy() 41 9.008e-05 0.000103 0.0001188 0.00% Castro::do_old_sources() 10 7.746e-05 9.472e-05 0.0001089 0.00% Castro::construct_old_source() 50 6.725e-05 7.352e-05 8.532e-05 0.00% Amr::FinalizeInit() 1 4.317e-06 1.473e-05 8.348e-05 0.00% FillPatchSingleLevel 41 6.544e-05 7.134e-05 8.146e-05 0.00% Castro::do_new_sources() 10 5.998e-05 6.912e-05 8.004e-05 0.00% Castro::Castro() 1 5.714e-05 6.714e-05 7.898e-05 0.00% Amr::defBaseLevel() 1 4.449e-05 6.53e-05 7.641e-05 0.00% Castro::subcycle_advance_ctu() 10 4.719e-05 5.318e-05 5.883e-05 0.00% Castro::apply_source_to_state() 20 4.682e-05 5.348e-05 5.845e-05 0.00% Castro::advance() 10 4.438e-05 5.006e-05 5.396e-05 0.00% Castro::construct_old_gravity() 10 3.582e-05 4.178e-05 5.128e-05 0.00% Castro::construct_new_gravity() 10 3.297e-05 3.714e-05 4.838e-05 0.00% Castro::check_for_nan() 20 2.545e-05 2.841e-05 3.144e-05 0.00% Castro::expand_state() 10 1.999e-05 2.724e-05 3.023e-05 0.00% Castro::post_timestep() 10 1.355e-05 1.724e-05 2.19e-05 0.00% Castro::post_init() 1 1.403e-05 1.703e-05 2.143e-05 0.00% Amr::initialInit() 1 1.679e-06 4.229e-06 1.787e-05 0.00% Castro::computeNewDt() 9 9.702e-06 1.085e-05 1.283e-05 0.00% Amr::InitializeInit() 1 2.86e-06 4.462e-06 1.099e-05 0.00% Castro::computeInitialDt() 2 3.845e-06 4.246e-06 4.694e-06 0.00% Amr::init() 1 1.915e-06 2.347e-06 3.19e-06 0.00% Other 261 0.01625 0.0189 0.02055 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.403 3.404 3.404 100.00% Amr::coarseTimeStep() 10 3.202 3.202 3.202 94.07% Amr::timeStep() 10 3.19 3.19 3.191 93.73% Castro::advance() 10 3.174 3.174 3.174 93.23% Castro::subcycle_advance_ctu() 10 3.092 3.094 3.097 90.99% Castro::do_advance_ctu() 10 3.092 3.094 3.097 90.98% Castro::construct_ctu_hydro_source() 10 2.316 2.329 2.333 68.52% Gravity::make_radial_gravity() 21 0.3115 0.3204 0.3298 9.69% AmrLevel::FillPatch() 41 0.1979 0.2159 0.2358 6.93% Gravity::get_new_grav_vector() 11 0.2135 0.2145 0.2163 6.35% Castro::construct_old_gravity() 10 0.1887 0.1955 0.2028 5.96% Gravity::get_old_grav_vector() 10 0.1878 0.1948 0.202 5.93% FillPatchIterator::Initialize 41 0.1648 0.1806 0.1945 5.71% Amr::init() 1 0.1896 0.1897 0.1898 5.57% Castro::construct_new_gravity() 10 0.1877 0.1888 0.1898 5.57% Castro::initialize_do_advance() 10 0.165 0.1712 0.1754 5.15% Amr::initialInit() 1 0.1739 0.174 0.1743 5.12% FillPatchIterator::FillFromLevel0() 41 0.1156 0.1334 0.1445 4.24% FillPatchSingleLevel 41 0.1155 0.1331 0.1441 4.23% Amr::InitializeInit() 1 0.05971 0.09578 0.1439 4.23% Amr::defBaseLevel() 1 0.05971 0.09577 0.1439 4.23% Castro::initData() 1 0.04397 0.07872 0.1255 3.69% Castro::clean_state() 62 0.1174 0.1214 0.1253 3.68% check_for_negative_density() 10 0.02273 0.09377 0.1221 3.59% Castro::do_old_sources() 10 0.09774 0.106 0.1216 3.57% Castro::expand_state() 10 0.1081 0.1143 0.1174 3.45% Amr::FinalizeInit() 1 0.03 0.07827 0.1142 3.35% FabArray::ParallelCopy() 41 0.08328 0.09948 0.1104 3.24% Castro::estTimeStep() 21 0.02654 0.07565 0.1068 3.14% amrex::Copy() 193 0.08231 0.08881 0.09939 2.92% Castro::computeInitialDt() 2 0.002506 0.05058 0.08646 2.54% Castro::initialize_advance() 10 0.07282 0.07611 0.07823 2.30% FabArray::setVal() 143 0.0688 0.07299 0.07688 2.26% Castro::do_new_sources() 10 0.06301 0.06685 0.07098 2.08% Castro::computeTemp() 63 0.06582 0.06784 0.06936 2.04% FabArray::ParallelCopy_finish() 41 0.04007 0.05602 0.06798 2.00% Castro::normalize_species() 62 0.04578 0.04801 0.05111 1.50% Castro::reset_internal_energy(MultiFab) 63 0.04694 0.04887 0.04994 1.47% Castro::reset_internal_energy(Fab) 1008 0.04651 0.04844 0.0495 1.45% FabArray::ParallelCopy_nowait() 41 0.04229 0.04336 0.04451 1.31% StateDataPhysBCFunct::() 41 0.03032 0.03357 0.03772 1.11% StateData::FillBoundary(geom) 41 0.0302 0.03343 0.03755 1.10% Castro::construct_new_source() 50 0.02959 0.0316 0.03373 0.99% Gravity::interpolate_monopole_grav() 21 0.02669 0.02737 0.02893 0.85% Castro::post_init() 1 0.02678 0.027 0.02731 0.80% Castro::construct_new_gravity_source() 10 0.02326 0.02499 0.02711 0.80% Amr::writePlotFile() 2 0.02322 0.02342 0.02361 0.69% Castro::finalize_do_advance() 10 0.01291 0.01765 0.0214 0.63% Castro::post_timestep() 10 0.01579 0.01658 0.01721 0.51% FabArray::setDomainBndry() 41 0.008194 0.01229 0.01462 0.43% Castro::apply_source_to_state() 20 0.01217 0.0134 0.01388 0.41% FabArray::Saxpy() 20 0.01212 0.01334 0.01383 0.41% VisMF::Write(FabArray) 2 0.009456 0.01003 0.01274 0.37% Castro::check_for_nan() 20 0.01082 0.01158 0.01262 0.37% MultiFab::contains_nan() 20 0.01079 0.01156 0.01259 0.37% Castro::Castro() 1 0.009734 0.01099 0.012 0.35% Castro::construct_old_source() 50 0.009697 0.01003 0.01023 0.30% Castro::construct_old_gravity_source() 10 0.009629 0.009955 0.01016 0.30% Castro::computeNewDt() 9 0.008664 0.008672 0.008685 0.26% Castro::initMFs() 1 0.006478 0.006967 0.007559 0.22% Other 261 0.02656 0.03023 0.03292 0.97% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 34 B 43 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8664 KiB 8672 KiB 8676 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6730 KiB 6736 KiB 6738 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4538 KiB 4540 KiB 4546 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 216 KiB 234 KiB 253 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2793 KiB 2796 KiB 2796 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 233 KiB 239 KiB 246 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 42 KiB 46 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 80 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 73 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.02-17-g28a1e19b3b27) finalized