Initializing AMReX (25.02-21-g044d52f7d309)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.02-21-g044d52f7d309) initialized Starting run at 06:20:31 UTC on 2025-02-24. Successfully read inputs file ... Castro git describe: 25.02-4-g82feac296 AMReX git describe: 25.02-21-g044d52f7d Microphysics git describe: 25.02-21-g444d983c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014447679 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.336147639 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.334087006 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.316368125 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.312955932 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.362820462 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.313206561 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.348876554 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.304248917 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.308641655 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.304523202 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008731666 seconds Ending run at 06:20:34 UTC on 2025-02-24. Run time = 3.421038268 Run time without initialization = 3.255551006 Average number of zones advanced per microsecond: 0.805 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4195 ... 3.4202 ... 3.4216 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1693 2.2355 2.2901 66.93% Gravity::make_radial_gravity() 21 0.2976 0.3067 0.3131 9.15% check_for_negative_density() 10 0.08258 0.1389 0.2099 6.13% Castro::estTimeStep() 21 0.02479 0.06178 0.1028 3.00% Castro::initData() 1 0.03712 0.07201 0.1017 2.97% amrex::Copy() 193 0.06622 0.07817 0.08447 2.47% FabArray::ParallelCopy_finish() 41 0.03937 0.05229 0.08379 2.45% FabArray::setVal() 143 0.05873 0.06698 0.07161 2.09% Castro::normalize_species() 62 0.04526 0.04723 0.05452 1.59% Castro::reset_internal_energy(Fab) 1008 0.04277 0.04485 0.04762 1.39% FabArray::ParallelCopy_nowait() 41 0.03652 0.0408 0.04298 1.26% StateData::FillBoundary(geom) 41 0.03078 0.03267 0.03535 1.03% FillPatchIterator::Initialize 41 0.02701 0.03204 0.03471 1.01% Gravity::interpolate_monopole_grav() 21 0.02653 0.02698 0.02763 0.81% Castro::construct_new_gravity_source() 10 0.02341 0.02511 0.02692 0.79% Castro::computeTemp() 63 0.0169 0.01789 0.01875 0.55% Castro::initialize_do_advance() 10 0.01189 0.01656 0.01787 0.52% MultiFab::contains_nan() 20 0.01067 0.012 0.01364 0.40% FabArray::setDomainBndry() 41 0.007891 0.01084 0.01344 0.39% Castro::initialize_advance() 10 0.005811 0.01085 0.01343 0.39% FabArray::Saxpy() 20 0.01008 0.01196 0.01294 0.38% VisMF::Write(FabArray) 2 0.009006 0.009837 0.01288 0.38% Amr::writePlotFile() 2 0.007756 0.01086 0.01266 0.37% Castro::construct_old_gravity_source() 10 0.007309 0.009316 0.009795 0.29% Castro::initMFs() 1 0.006588 0.006995 0.00824 0.24% Castro::construct_new_source() 50 0.005568 0.005888 0.006087 0.18% main() 1 0.003562 0.004038 0.00455 0.13% Gravity::get_new_grav_vector() 11 0.003159 0.003375 0.003638 0.11% Amr::coarseTimeStep() 10 0.001993 0.00282 0.003629 0.11% Gravity::get_old_grav_vector() 10 0.001704 0.002069 0.0024 0.07% Castro::finalize_do_advance() 10 0.0005101 0.001176 0.001614 0.05% AmrLevel::FillPatch() 41 0.0007447 0.001082 0.001205 0.04% Amr::timeStep() 10 0.0001445 0.0001948 0.0004553 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002763 0.0003018 0.0003361 0.01% Castro::do_advance_ctu() 10 0.0001495 0.0001729 0.0001966 0.01% Castro::clean_state() 62 0.0001394 0.0001562 0.0001745 0.01% StateDataPhysBCFunct::() 41 9.331e-05 0.000115 0.0001332 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001015 0.0001081 0.000115 0.00% FabArray::ParallelCopy() 41 9.128e-05 9.567e-05 0.0001049 0.00% Castro::do_old_sources() 10 8.188e-05 9.055e-05 9.872e-05 0.00% Castro::Castro() 1 5.971e-05 6.808e-05 8.215e-05 0.00% Amr::FinalizeInit() 1 3.921e-06 1.414e-05 8.146e-05 0.00% FillPatchSingleLevel 41 6.58e-05 7.039e-05 8.087e-05 0.00% Castro::construct_old_source() 50 5.185e-05 6.491e-05 7.806e-05 0.00% Castro::do_new_sources() 10 5.439e-05 6.246e-05 7.379e-05 0.00% Castro::advance() 10 4.653e-05 5.202e-05 6.947e-05 0.00% Castro::subcycle_advance_ctu() 10 4.453e-05 4.863e-05 5.422e-05 0.00% Castro::apply_source_to_state() 20 4.189e-05 4.676e-05 5.104e-05 0.00% Castro::construct_old_gravity() 10 3.535e-05 3.962e-05 4.738e-05 0.00% Amr::defBaseLevel() 1 4.229e-05 4.441e-05 4.674e-05 0.00% Castro::construct_new_gravity() 10 3.077e-05 3.738e-05 4.391e-05 0.00% Castro::expand_state() 10 1.984e-05 2.537e-05 3.026e-05 0.00% Castro::check_for_nan() 20 2.547e-05 2.769e-05 2.905e-05 0.00% Castro::post_init() 1 1.388e-05 1.675e-05 2.224e-05 0.00% Castro::post_timestep() 10 1.488e-05 1.583e-05 1.676e-05 0.00% Castro::computeNewDt() 9 9.261e-06 1.02e-05 1.086e-05 0.00% Amr::InitializeInit() 1 2.588e-06 3.238e-06 6.174e-06 0.00% Castro::computeInitialDt() 2 3.328e-06 3.758e-06 4.856e-06 0.00% Amr::initialInit() 1 1.601e-06 2.154e-06 3.423e-06 0.00% Amr::init() 1 1.421e-06 1.989e-06 2.593e-06 0.00% Other 261 0.01597 0.01868 0.02115 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.419 3.42 3.422 100.00% Amr::coarseTimeStep() 10 3.242 3.242 3.242 94.76% Amr::timeStep() 10 3.229 3.23 3.231 94.42% Castro::advance() 10 3.213 3.214 3.214 93.94% Castro::subcycle_advance_ctu() 10 3.137 3.141 3.151 92.09% Castro::do_advance_ctu() 10 3.137 3.141 3.151 92.08% Castro::construct_ctu_hydro_source() 10 2.393 2.396 2.401 70.17% Gravity::make_radial_gravity() 21 0.3126 0.3224 0.3268 9.55% Gravity::get_new_grav_vector() 11 0.2105 0.2128 0.2143 6.26% AmrLevel::FillPatch() 41 0.194 0.2011 0.2139 6.25% check_for_negative_density() 10 0.08258 0.1389 0.2099 6.13% Castro::construct_old_gravity() 10 0.1846 0.1918 0.1963 5.74% Gravity::get_old_grav_vector() 10 0.1839 0.1911 0.1956 5.72% Castro::construct_new_gravity() 10 0.1885 0.1904 0.1915 5.60% FillPatchIterator::Initialize 41 0.1617 0.1691 0.1879 5.49% Castro::initialize_do_advance() 10 0.1598 0.1661 0.1723 5.04% Amr::init() 1 0.1642 0.1647 0.1655 4.84% FillPatchIterator::FillFromLevel0() 41 0.1176 0.1262 0.153 4.47% FillPatchSingleLevel 41 0.1175 0.1261 0.1529 4.47% Amr::initialInit() 1 0.1493 0.15 0.1509 4.41% Castro::expand_state() 10 0.1058 0.1124 0.1237 3.62% Amr::InitializeInit() 1 0.05763 0.09318 0.1235 3.61% Amr::defBaseLevel() 1 0.05762 0.09318 0.1235 3.61% Castro::clean_state() 62 0.1106 0.1157 0.1209 3.53% FabArray::ParallelCopy() 41 0.08192 0.09327 0.1205 3.52% Castro::initData() 1 0.04093 0.07571 0.1053 3.08% Castro::estTimeStep() 21 0.02479 0.06178 0.1028 3.00% Castro::do_old_sources() 10 0.09382 0.0952 0.09712 2.84% Amr::FinalizeInit() 1 0.0262 0.05684 0.093 2.72% amrex::Copy() 193 0.06622 0.07817 0.08447 2.47% FabArray::ParallelCopy_finish() 41 0.03937 0.05229 0.08379 2.45% Castro::initialize_advance() 10 0.05872 0.06945 0.07338 2.14% FabArray::setVal() 143 0.05873 0.06698 0.07161 2.09% Castro::do_new_sources() 10 0.05891 0.0638 0.06937 2.03% Castro::computeInitialDt() 2 0.002131 0.03276 0.06884 2.01% Castro::computeTemp() 63 0.05996 0.06305 0.06668 1.95% Castro::normalize_species() 62 0.04526 0.04723 0.05452 1.59% Castro::reset_internal_energy(MultiFab) 63 0.04305 0.04515 0.04794 1.40% Castro::reset_internal_energy(Fab) 1008 0.04277 0.04485 0.04762 1.39% FabArray::ParallelCopy_nowait() 41 0.03661 0.04089 0.04307 1.26% StateDataPhysBCFunct::() 41 0.03087 0.03278 0.03547 1.04% StateData::FillBoundary(geom) 41 0.03078 0.03267 0.03535 1.03% Castro::construct_new_source() 50 0.02898 0.031 0.03295 0.96% Castro::finalize_do_advance() 10 0.01516 0.02157 0.02823 0.83% Gravity::interpolate_monopole_grav() 21 0.02653 0.02698 0.02763 0.81% Castro::construct_new_gravity_source() 10 0.02341 0.02511 0.02692 0.79% Amr::writePlotFile() 2 0.0234 0.02349 0.02378 0.70% Castro::post_init() 1 0.02341 0.02363 0.02372 0.69% Castro::post_timestep() 10 0.01533 0.016 0.01724 0.50% Castro::check_for_nan() 20 0.01069 0.01203 0.01367 0.40% MultiFab::contains_nan() 20 0.01067 0.012 0.01364 0.40% FabArray::setDomainBndry() 41 0.007891 0.01084 0.01344 0.39% Castro::apply_source_to_state() 20 0.01013 0.012 0.01299 0.38% FabArray::Saxpy() 20 0.01008 0.01196 0.01294 0.38% VisMF::Write(FabArray) 2 0.009006 0.009837 0.01288 0.38% Castro::Castro() 1 0.01012 0.01094 0.012 0.35% Castro::construct_old_source() 50 0.007361 0.009381 0.009864 0.29% Castro::construct_old_gravity_source() 10 0.007309 0.009316 0.009795 0.29% Castro::computeNewDt() 9 0.008627 0.008644 0.008655 0.25% Castro::initMFs() 1 0.006588 0.006995 0.00824 0.24% Other 261 0.02606 0.03004 0.03408 1.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8670 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6784 KiB 6792 KiB 6797 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4583 KiB 4587 KiB 4604 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 211 KiB 221 KiB 240 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2814 KiB 2818 KiB 2819 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 233 KiB 240 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 41 KiB 56 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.02-21-g044d52f7d309) finalized