Initializing AMReX (25.02-23-g06b4a5b105f5)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.02-23-g06b4a5b105f5) initialized Starting run at 06:38:21 UTC on 2025-02-25. Successfully read inputs file ... Castro git describe: 25.02-5-g1b74f64af AMReX git describe: 25.02-23-g06b4a5b10 Microphysics git describe: 25.02-26-g9ed3eef4 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014940027 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.336927406 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.325760192 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.316287776 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.313990816 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.362922843 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.302606005 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.292849587 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.293689443 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.294273338 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.293899122 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007579183 seconds Ending run at 06:38:24 UTC on 2025-02-25. Run time = 3.32387576 Run time without initialization = 3.14573022 Average number of zones advanced per microsecond: 0.833 Average number of zones advanced per microsecond per rank: 0.104 TinyProfiler total time across processes [min...avg...max]: 3.3191 ... 3.3224 ... 3.3240 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1760 2.2144 2.2638 68.11% Gravity::make_radial_gravity() 21 0.2879 0.2968 0.3128 9.41% check_for_negative_density() 10 0.02092 0.07375 0.1147 3.45% Castro::estTimeStep() 21 0.03302 0.06761 0.1073 3.23% Castro::initData() 1 0.03873 0.07177 0.107 3.22% FabArray::ParallelCopy_finish() 41 0.03842 0.04743 0.08746 2.63% amrex::Copy() 193 0.0631 0.07734 0.08666 2.61% FabArray::setVal() 143 0.05283 0.06519 0.0709 2.13% Castro::reset_internal_energy(Fab) 1008 0.04467 0.0459 0.04695 1.41% Castro::normalize_species() 62 0.04478 0.04543 0.04631 1.39% FabArray::ParallelCopy_nowait() 41 0.03518 0.04059 0.04256 1.28% FillPatchIterator::Initialize 41 0.02747 0.03218 0.03436 1.03% StateData::FillBoundary(geom) 41 0.02893 0.03195 0.03404 1.02% Castro::construct_new_gravity_source() 10 0.02338 0.02478 0.02729 0.82% Gravity::interpolate_monopole_grav() 21 0.02639 0.02668 0.02689 0.81% Castro::computeTemp() 63 0.01756 0.01814 0.01884 0.57% Castro::initialize_do_advance() 10 0.01152 0.01632 0.01786 0.54% Castro::initialize_advance() 10 0.005309 0.01075 0.01361 0.41% FabArray::setDomainBndry() 41 0.007448 0.01133 0.01355 0.41% FabArray::Saxpy() 20 0.01066 0.0123 0.01323 0.40% Amr::writePlotFile() 2 0.007573 0.01031 0.01275 0.38% VisMF::Write(FabArray) 2 0.008742 0.009927 0.01257 0.38% MultiFab::contains_nan() 20 0.01058 0.01152 0.01234 0.37% Castro::initMFs() 1 0.006444 0.007606 0.01053 0.32% Castro::construct_old_gravity_source() 10 0.006847 0.009549 0.01011 0.30% StateData::define() 4 0.005354 0.006366 0.008289 0.25% Castro::construct_new_source() 50 0.005562 0.005891 0.006297 0.19% main() 1 0.00397 0.004151 0.004405 0.13% Gravity::get_new_grav_vector() 11 0.002923 0.003482 0.00382 0.11% Gravity::get_old_grav_vector() 10 0.001451 0.00199 0.002432 0.07% Amr::coarseTimeStep() 10 0.001495 0.001689 0.002258 0.07% Castro::finalize_do_advance() 10 0.0006348 0.001024 0.00137 0.04% AmrLevel::FillPatch() 41 0.0008158 0.0009889 0.001279 0.04% Amr::timeStep() 10 0.0001335 0.0001863 0.0004348 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002743 0.0002893 0.0003058 0.01% Castro::do_advance_ctu() 10 0.000143 0.0001709 0.0002082 0.01% Castro::clean_state() 62 0.0001415 0.000155 0.0001719 0.01% StateDataPhysBCFunct::() 41 9.57e-05 0.0001088 0.0001197 0.00% FillPatchIterator::FillFromLevel0() 41 9.729e-05 0.0001019 0.0001134 0.00% Castro::do_old_sources() 10 7.595e-05 9.215e-05 0.0001099 0.00% FabArray::ParallelCopy() 41 8.414e-05 9.422e-05 0.0001022 0.00% Amr::FinalizeInit() 1 4.061e-06 1.634e-05 9.829e-05 0.00% Castro::construct_old_source() 50 5.042e-05 6.694e-05 8.12e-05 0.00% Castro::do_new_sources() 10 4.997e-05 6.152e-05 7.561e-05 0.00% Castro::Castro() 1 4.878e-05 6.12e-05 7.501e-05 0.00% FillPatchSingleLevel 41 5.969e-05 6.648e-05 7.223e-05 0.00% Castro::advance() 10 4.112e-05 5.007e-05 6.525e-05 0.00% Castro::construct_old_gravity() 10 3.234e-05 4.388e-05 6.486e-05 0.00% Amr::defBaseLevel() 1 4.176e-05 5.039e-05 6.352e-05 0.00% Castro::apply_source_to_state() 20 4.18e-05 4.729e-05 5.06e-05 0.00% Castro::subcycle_advance_ctu() 10 4.355e-05 4.695e-05 5.039e-05 0.00% Castro::construct_new_gravity() 10 2.766e-05 3.523e-05 4.174e-05 0.00% Castro::check_for_nan() 20 2.346e-05 2.648e-05 3.006e-05 0.00% Castro::expand_state() 10 2.08e-05 2.457e-05 2.939e-05 0.00% Castro::post_timestep() 10 1.2e-05 1.611e-05 1.999e-05 0.00% AmrLevel::AmrLevel(dm) 1 7.645e-06 1.131e-05 1.959e-05 0.00% Castro::post_init() 1 1.32e-05 1.528e-05 1.784e-05 0.00% Castro::computeNewDt() 9 8.348e-06 9.862e-06 1.172e-05 0.00% Amr::InitializeInit() 1 2.636e-06 3.454e-06 5.599e-06 0.00% Castro::computeInitialDt() 2 3.448e-06 4.038e-06 4.353e-06 0.00% Amr::init() 1 1.948e-06 2.265e-06 2.83e-06 0.00% Amr::initialInit() 1 1.692e-06 1.943e-06 2.371e-06 0.00% Other 256 0.01057 0.01548 0.0187 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.319 3.322 3.324 100.00% Amr::coarseTimeStep() 10 3.134 3.134 3.134 94.28% Amr::timeStep() 10 3.121 3.122 3.122 93.93% Castro::advance() 10 3.106 3.106 3.106 93.45% Castro::subcycle_advance_ctu() 10 3.03 3.034 3.049 91.73% Castro::do_advance_ctu() 10 3.03 3.034 3.049 91.73% Castro::construct_ctu_hydro_source() 10 2.305 2.309 2.312 69.55% Gravity::make_radial_gravity() 21 0.3043 0.3128 0.3264 9.82% Gravity::get_new_grav_vector() 11 0.2085 0.2097 0.2119 6.38% AmrLevel::FillPatch() 41 0.1838 0.1953 0.2113 6.36% Castro::construct_old_gravity() 10 0.1774 0.1836 0.1953 5.88% Gravity::get_old_grav_vector() 10 0.1767 0.183 0.1947 5.86% Castro::construct_new_gravity() 10 0.1863 0.1872 0.189 5.69% FillPatchIterator::Initialize 41 0.1528 0.1639 0.1869 5.62% Amr::init() 1 0.1733 0.1765 0.1782 5.36% Castro::initialize_do_advance() 10 0.1584 0.163 0.1676 5.04% Amr::initialInit() 1 0.1581 0.1613 0.1631 4.91% FillPatchIterator::FillFromLevel0() 41 0.1125 0.1204 0.152 4.57% FillPatchSingleLevel 41 0.1123 0.1203 0.1519 4.57% Amr::InitializeInit() 1 0.06263 0.09627 0.1324 3.98% Amr::defBaseLevel() 1 0.06263 0.09627 0.1324 3.98% FabArray::ParallelCopy() 41 0.07983 0.0882 0.1228 3.69% Castro::expand_state() 10 0.1044 0.1098 0.1192 3.59% Castro::clean_state() 62 0.1132 0.1151 0.1173 3.53% check_for_negative_density() 10 0.02092 0.07375 0.1147 3.45% Castro::initData() 1 0.04232 0.07535 0.1105 3.32% Castro::estTimeStep() 21 0.03302 0.06761 0.1073 3.23% Amr::FinalizeInit() 1 0.02576 0.06507 0.09942 2.99% Castro::do_old_sources() 10 0.08938 0.09311 0.09693 2.92% FabArray::ParallelCopy_finish() 41 0.03842 0.04743 0.08746 2.63% amrex::Copy() 193 0.0631 0.07734 0.08666 2.61% Castro::computeInitialDt() 2 0.002297 0.04114 0.07543 2.27% Castro::initialize_advance() 10 0.05314 0.06834 0.07287 2.19% FabArray::setVal() 143 0.05283 0.06519 0.0709 2.13% Castro::do_new_sources() 10 0.0595 0.06359 0.06914 2.08% Castro::computeTemp() 63 0.063 0.06433 0.06569 1.98% Castro::reset_internal_energy(MultiFab) 63 0.04495 0.04619 0.04724 1.42% Castro::reset_internal_energy(Fab) 1008 0.04467 0.0459 0.04695 1.41% Castro::normalize_species() 62 0.04478 0.04543 0.04631 1.39% FabArray::ParallelCopy_nowait() 41 0.03527 0.04068 0.04264 1.28% StateDataPhysBCFunct::() 41 0.02904 0.03206 0.03416 1.03% StateData::FillBoundary(geom) 41 0.02893 0.03195 0.03404 1.02% Castro::construct_new_source() 50 0.02896 0.03067 0.0332 1.00% Castro::construct_new_gravity_source() 10 0.02338 0.02478 0.02729 0.82% Gravity::interpolate_monopole_grav() 21 0.02639 0.02668 0.02689 0.81% Castro::finalize_do_advance() 10 0.01237 0.01871 0.02407 0.72% Castro::post_init() 1 0.02343 0.02368 0.02382 0.72% Amr::writePlotFile() 2 0.02268 0.02281 0.02328 0.70% Castro::post_timestep() 10 0.01549 0.0159 0.01629 0.49% Castro::Castro() 1 0.01019 0.01129 0.01421 0.43% FabArray::setDomainBndry() 41 0.007448 0.01133 0.01355 0.41% Castro::apply_source_to_state() 20 0.0107 0.01235 0.01328 0.40% FabArray::Saxpy() 20 0.01066 0.0123 0.01323 0.40% VisMF::Write(FabArray) 2 0.008742 0.009927 0.01257 0.38% Castro::check_for_nan() 20 0.01061 0.01155 0.01237 0.37% MultiFab::contains_nan() 20 0.01058 0.01152 0.01234 0.37% Castro::initMFs() 1 0.006444 0.007606 0.01053 0.32% Castro::construct_old_source() 50 0.006898 0.009616 0.01019 0.31% Castro::construct_old_gravity_source() 10 0.006847 0.009549 0.01011 0.30% Castro::computeNewDt() 9 0.008779 0.008803 0.008827 0.27% AmrLevel::AmrLevel(dm) 1 0.005362 0.006378 0.008307 0.25% StateData::define() 4 0.005354 0.006366 0.008289 0.25% Other 256 0.01504 0.02352 0.02877 0.87% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 37 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8651 KiB 8660 KiB 8665 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6747 KiB 6756 KiB 6765 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7125 KiB 7134 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4554 KiB 4562 KiB 4589 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 209 KiB 222 KiB 242 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2800 KiB 2804 KiB 2807 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 233 KiB 240 KiB 251 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 40 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 81 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.02-23-g06b4a5b105f5) finalized