Initializing AMReX (25.02-23-g06b4a5b105f5)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.02-23-g06b4a5b105f5) initialized Starting run at 06:20:04 UTC on 2025-02-26. Successfully read inputs file ... Castro git describe: 25.02-5-g1b74f64af AMReX git describe: 25.02-23-g06b4a5b10 Microphysics git describe: 25.02-27-g4532398e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014875619 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.352711918 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.332079944 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.333135463 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.312847925 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.359408246 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.312498209 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.32648633 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.310005483 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.303880206 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.305276381 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00855722 seconds Ending run at 06:20:07 UTC on 2025-02-26. Run time = 3.430982522 Run time without initialization = 3.262428162 Average number of zones advanced per microsecond: 0.804 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.4298 ... 3.4304 ... 3.4312 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2098 2.2568 2.3108 67.35% Gravity::make_radial_gravity() 21 0.301 0.309 0.3262 9.51% check_for_negative_density() 10 0.06059 0.1161 0.1657 4.83% Castro::estTimeStep() 21 0.02783 0.06432 0.1046 3.05% Castro::initData() 1 0.03739 0.07203 0.1042 3.04% FabArray::ParallelCopy_finish() 41 0.04053 0.05525 0.09535 2.78% amrex::Copy() 193 0.06169 0.07882 0.08582 2.50% FabArray::setVal() 143 0.05477 0.06712 0.07653 2.23% Castro::normalize_species() 62 0.04556 0.04657 0.04981 1.45% Castro::reset_internal_energy(Fab) 1008 0.04402 0.04575 0.04753 1.39% FabArray::ParallelCopy_nowait() 41 0.03449 0.04134 0.04425 1.29% StateData::FillBoundary(geom) 41 0.03 0.03297 0.0361 1.05% FillPatchIterator::Initialize 41 0.02748 0.03246 0.03483 1.02% Castro::construct_new_gravity_source() 10 0.02327 0.02531 0.02921 0.85% Gravity::interpolate_monopole_grav() 21 0.02696 0.02722 0.02805 0.82% Castro::computeTemp() 63 0.0176 0.01816 0.01912 0.56% Castro::initialize_do_advance() 10 0.01128 0.01599 0.01765 0.51% FabArray::setDomainBndry() 41 0.007225 0.01129 0.01443 0.42% MultiFab::contains_nan() 20 0.01083 0.0118 0.01412 0.41% Castro::initialize_advance() 10 0.005411 0.01084 0.01397 0.41% Amr::writePlotFile() 2 0.007829 0.01109 0.01376 0.40% FabArray::Saxpy() 20 0.0102 0.01239 0.0134 0.39% VisMF::Write(FabArray) 2 0.008848 0.01009 0.01306 0.38% Castro::construct_old_gravity_source() 10 0.006552 0.009345 0.009941 0.29% Castro::initMFs() 1 0.006367 0.007119 0.008056 0.23% Castro::construct_new_source() 50 0.005623 0.006083 0.006467 0.19% main() 1 0.004107 0.004854 0.005089 0.15% Gravity::get_new_grav_vector() 11 0.002813 0.003532 0.004078 0.12% Gravity::get_old_grav_vector() 10 0.001469 0.00202 0.002373 0.07% Amr::coarseTimeStep() 10 0.00101 0.001902 0.002351 0.07% Castro::finalize_do_advance() 10 0.0005164 0.001215 0.001843 0.05% AmrLevel::FillPatch() 41 0.0007398 0.001032 0.001243 0.04% Amr::timeStep() 10 0.0001348 0.0001958 0.0004619 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002814 0.0002983 0.0003194 0.01% Castro::do_advance_ctu() 10 0.0001588 0.0001771 0.0002015 0.01% Castro::clean_state() 62 0.0001513 0.0001568 0.0001634 0.00% StateDataPhysBCFunct::() 41 9.81e-05 0.0001097 0.0001209 0.00% FillPatchIterator::FillFromLevel0() 41 9.739e-05 0.0001104 0.0001203 0.00% FabArray::ParallelCopy() 41 8.347e-05 9.85e-05 0.000108 0.00% Castro::do_old_sources() 10 8.409e-05 9.593e-05 0.0001069 0.00% Castro::Castro() 1 5.426e-05 7.148e-05 9.676e-05 0.00% FillPatchSingleLevel 41 6.864e-05 7.353e-05 7.815e-05 0.00% Castro::construct_old_source() 50 5.395e-05 6.603e-05 7.466e-05 0.00% Amr::FinalizeInit() 1 3.568e-06 1.334e-05 7.227e-05 0.00% Castro::advance() 10 4.274e-05 5.223e-05 6.892e-05 0.00% Castro::do_new_sources() 10 5.844e-05 6.296e-05 6.764e-05 0.00% Amr::defBaseLevel() 1 4.259e-05 5.545e-05 6.564e-05 0.00% Castro::subcycle_advance_ctu() 10 4.037e-05 4.849e-05 5.64e-05 0.00% Castro::apply_source_to_state() 20 3.581e-05 4.638e-05 5.274e-05 0.00% Castro::construct_old_gravity() 10 3.755e-05 4.198e-05 4.512e-05 0.00% Castro::construct_new_gravity() 10 3.454e-05 3.82e-05 4.381e-05 0.00% Castro::check_for_nan() 20 2.476e-05 2.68e-05 3.132e-05 0.00% Castro::expand_state() 10 2.026e-05 2.471e-05 2.847e-05 0.00% Castro::computeNewDt() 9 8.877e-06 1.136e-05 2.031e-05 0.00% Castro::post_init() 1 1.457e-05 1.615e-05 1.943e-05 0.00% Castro::post_timestep() 10 1.438e-05 1.701e-05 1.902e-05 0.00% Amr::initialInit() 1 1.541e-06 2.643e-06 8.212e-06 0.00% Amr::InitializeInit() 1 2.456e-06 3.268e-06 5.369e-06 0.00% Castro::computeInitialDt() 2 3.387e-06 3.78e-06 4.567e-06 0.00% Amr::init() 1 1.751e-06 2.002e-06 2.401e-06 0.00% Other 261 0.01567 0.0186 0.02085 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.43 3.43 3.431 100.00% Amr::coarseTimeStep() 10 3.249 3.249 3.249 94.69% Amr::timeStep() 10 3.237 3.237 3.238 94.37% Castro::advance() 10 3.22 3.221 3.222 93.89% Castro::subcycle_advance_ctu() 10 3.141 3.148 3.163 92.19% Castro::do_advance_ctu() 10 3.141 3.148 3.163 92.19% Castro::construct_ctu_hydro_source() 10 2.39 2.394 2.398 69.90% Gravity::make_radial_gravity() 21 0.3174 0.3249 0.3387 9.87% AmrLevel::FillPatch() 41 0.1936 0.2063 0.2206 6.43% Gravity::get_new_grav_vector() 11 0.2124 0.2147 0.2159 6.29% Castro::construct_old_gravity() 10 0.1876 0.193 0.2046 5.96% Gravity::get_old_grav_vector() 10 0.1869 0.1924 0.204 5.94% FillPatchIterator::Initialize 41 0.1598 0.1738 0.1971 5.74% Castro::construct_new_gravity() 10 0.1911 0.1924 0.1931 5.63% Castro::initialize_do_advance() 10 0.164 0.1692 0.1727 5.03% Amr::init() 1 0.1672 0.1677 0.1683 4.91% check_for_negative_density() 10 0.06059 0.1161 0.1657 4.83% FillPatchIterator::FillFromLevel0() 41 0.1184 0.13 0.1624 4.73% FillPatchSingleLevel 41 0.1182 0.1299 0.1623 4.73% Amr::initialInit() 1 0.152 0.1525 0.1531 4.46% FabArray::ParallelCopy() 41 0.08312 0.09677 0.13 3.79% Amr::InitializeInit() 1 0.05698 0.09314 0.1257 3.66% Amr::defBaseLevel() 1 0.05698 0.09313 0.1257 3.66% Castro::expand_state() 10 0.1087 0.1156 0.1251 3.65% Castro::clean_state() 62 0.1136 0.1162 0.1227 3.58% Castro::initData() 1 0.0412 0.07572 0.1075 3.13% Castro::estTimeStep() 21 0.02783 0.06432 0.1046 3.05% Castro::do_old_sources() 10 0.09359 0.09702 0.1006 2.93% Amr::FinalizeInit() 1 0.02625 0.05937 0.09615 2.80% FabArray::ParallelCopy_finish() 41 0.04053 0.05525 0.09535 2.78% amrex::Copy() 193 0.06169 0.07882 0.08582 2.50% Castro::initialize_advance() 10 0.05373 0.06925 0.07693 2.24% FabArray::setVal() 143 0.05477 0.06712 0.07653 2.23% Castro::do_new_sources() 10 0.05956 0.06458 0.07324 2.13% Castro::computeInitialDt() 2 0.002153 0.03519 0.07195 2.10% Castro::computeTemp() 63 0.06198 0.06421 0.06698 1.95% Castro::normalize_species() 62 0.04556 0.04657 0.04981 1.45% Castro::reset_internal_energy(MultiFab) 63 0.04431 0.04605 0.04785 1.39% Castro::reset_internal_energy(Fab) 1008 0.04402 0.04575 0.04753 1.39% FabArray::ParallelCopy_nowait() 41 0.03458 0.04143 0.04434 1.29% StateDataPhysBCFunct::() 41 0.0301 0.03308 0.03622 1.06% StateData::FillBoundary(geom) 41 0.03 0.03297 0.0361 1.05% Castro::construct_new_source() 50 0.02922 0.03139 0.03567 1.04% Castro::construct_new_gravity_source() 10 0.02327 0.02531 0.02921 0.85% Gravity::interpolate_monopole_grav() 21 0.02696 0.02722 0.02805 0.82% Castro::finalize_do_advance() 10 0.01205 0.02158 0.02627 0.77% Amr::writePlotFile() 2 0.02367 0.02385 0.02426 0.71% Castro::post_init() 1 0.02342 0.02373 0.02387 0.70% Castro::post_timestep() 10 0.01557 0.01586 0.01621 0.47% FabArray::setDomainBndry() 41 0.007225 0.01129 0.01443 0.42% Castro::check_for_nan() 20 0.01086 0.01182 0.01415 0.41% MultiFab::contains_nan() 20 0.01083 0.0118 0.01412 0.41% Castro::apply_source_to_state() 20 0.01024 0.01244 0.01345 0.39% FabArray::Saxpy() 20 0.0102 0.01239 0.0134 0.39% VisMF::Write(FabArray) 2 0.008848 0.01009 0.01306 0.38% Castro::Castro() 1 0.009286 0.0109 0.01192 0.35% Castro::construct_old_source() 50 0.006606 0.009411 0.01002 0.29% Castro::construct_old_gravity_source() 10 0.006552 0.009345 0.009941 0.29% Castro::computeNewDt() 9 0.008761 0.008779 0.008798 0.26% Castro::initMFs() 1 0.006367 0.007119 0.008056 0.23% Other 261 0.02556 0.02991 0.03376 0.98% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 33 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8669 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6778 KiB 6786 KiB 6788 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4575 KiB 4585 KiB 4607 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 212 KiB 227 KiB 245 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2812 KiB 2816 KiB 2817 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 236 KiB 241 KiB 252 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 43 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 72 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.02-23-g06b4a5b105f5) finalized