Initializing AMReX (25.02-23-g06b4a5b105f5)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.02-23-g06b4a5b105f5) initialized Starting run at 06:19:04 UTC on 2025-02-27. Successfully read inputs file ... Castro git describe: 25.02-5-g1b74f64af AMReX git describe: 25.02-23-g06b4a5b10 Microphysics git describe: 25.02-29-g14893546 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.022581755 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.418398102 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.387463692 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.372304878 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.394052274 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.368162306 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.376708402 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.371605113 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.381904762 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.370757896 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.371240023 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.231556172 seconds Ending run at 06:19:08 UTC on 2025-02-27. Run time = 4.258155207 Run time without initialization = 4.051464505 Average number of zones advanced per microsecond: 0.647 Average number of zones advanced per microsecond per rank: 0.081 TinyProfiler total time across processes [min...avg...max]: 4.2565 ... 4.2576 ... 4.2582 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3109 2.5568 2.7517 64.62% check_for_negative_density() 10 0.0332 0.2307 0.4807 11.29% Gravity::make_radial_gravity() 21 0.3055 0.3159 0.3354 7.88% Amr::writePlotFile() 2 0.2304 0.2348 0.2368 5.56% Castro::initData() 1 0.03857 0.07728 0.1247 2.93% amrex::Copy() 193 0.102 0.1122 0.1189 2.79% Castro::estTimeStep() 21 0.02303 0.0743 0.1137 2.67% FabArray::setVal() 143 0.08593 0.09427 0.09786 2.30% FabArray::ParallelCopy_finish() 41 0.04881 0.0554 0.07054 1.66% FabArray::ParallelCopy_nowait() 41 0.05129 0.0565 0.05887 1.38% FillPatchIterator::Initialize 41 0.051 0.05445 0.05875 1.38% Castro::normalize_species() 62 0.04559 0.04868 0.05288 1.24% Castro::reset_internal_energy(Fab) 1008 0.04781 0.04973 0.05256 1.23% StateData::FillBoundary(geom) 41 0.03652 0.0388 0.04252 1.00% Castro::construct_new_gravity_source() 10 0.02815 0.0295 0.03059 0.72% Gravity::interpolate_monopole_grav() 21 0.02662 0.02728 0.02841 0.67% Castro::initialize_do_advance() 10 0.02377 0.02601 0.02817 0.66% FabArray::setDomainBndry() 41 0.01839 0.02034 0.02366 0.56% Castro::computeTemp() 63 0.01877 0.01964 0.02076 0.49% VisMF::Write(FabArray) 2 0.01287 0.0153 0.01992 0.47% FabArray::Saxpy() 20 0.01484 0.01566 0.01698 0.40% Castro::initialize_advance() 10 0.01557 0.0163 0.01689 0.40% MultiFab::contains_nan() 20 0.01279 0.01342 0.01404 0.33% Castro::construct_old_gravity_source() 10 0.01173 0.01317 0.01379 0.32% Castro::initMFs() 1 0.009049 0.009646 0.01052 0.25% Castro::construct_new_source() 50 0.006676 0.007451 0.007889 0.19% main() 1 0.005455 0.00649 0.00683 0.16% Gravity::get_new_grav_vector() 11 0.004507 0.00534 0.005994 0.14% Gravity::get_old_grav_vector() 10 0.002736 0.00313 0.003637 0.09% Amr::coarseTimeStep() 10 0.001003 0.002091 0.003273 0.08% Castro::finalize_do_advance() 10 0.001331 0.001368 0.001391 0.03% AmrLevel::FillPatch() 41 0.0008456 0.001086 0.00128 0.03% Amr::timeStep() 10 0.0001319 0.0001988 0.0003504 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003112 0.0003278 0.0003388 0.01% Castro::do_advance_ctu() 10 0.0001605 0.0002055 0.0002319 0.01% Castro::clean_state() 62 0.000184 0.0001981 0.0002139 0.01% StateDataPhysBCFunct::() 41 0.0001219 0.000133 0.0001595 0.00% Castro::do_old_sources() 10 9.061e-05 0.0001181 0.0001538 0.00% FillPatchIterator::FillFromLevel0() 41 0.000119 0.0001312 0.0001489 0.00% FabArray::ParallelCopy() 41 0.0001115 0.0001215 0.0001348 0.00% Castro::Castro() 1 5.648e-05 7.015e-05 0.0001071 0.00% Castro::construct_old_source() 50 7.981e-05 8.978e-05 0.0001069 0.00% FillPatchSingleLevel 41 7.413e-05 8.578e-05 9.233e-05 0.00% Castro::subcycle_advance_ctu() 10 5.065e-05 6.404e-05 8.943e-05 0.00% Castro::do_new_sources() 10 6.588e-05 7.17e-05 7.887e-05 0.00% Amr::FinalizeInit() 1 4.263e-06 1.498e-05 7.78e-05 0.00% Castro::advance() 10 4.678e-05 6.131e-05 7.54e-05 0.00% Castro::apply_source_to_state() 20 4.52e-05 5.749e-05 6.533e-05 0.00% Castro::construct_old_gravity() 10 3.53e-05 5e-05 6.297e-05 0.00% Amr::defBaseLevel() 1 4.854e-05 5.162e-05 5.562e-05 0.00% Castro::construct_new_gravity() 10 3.049e-05 3.864e-05 5.482e-05 0.00% Castro::expand_state() 10 2.707e-05 3.961e-05 4.628e-05 0.00% Castro::check_for_nan() 20 2.876e-05 3.279e-05 3.855e-05 0.00% Castro::post_timestep() 10 1.452e-05 1.801e-05 2.286e-05 0.00% Castro::post_init() 1 1.464e-05 1.607e-05 1.9e-05 0.00% Castro::computeNewDt() 9 8.919e-06 1.068e-05 1.239e-05 0.00% Amr::InitializeInit() 1 2.666e-06 3.542e-06 5.887e-06 0.00% Castro::computeInitialDt() 2 4.003e-06 4.934e-06 5.84e-06 0.00% Amr::init() 1 1.875e-06 2.302e-06 3.382e-06 0.00% Amr::initialInit() 1 1.71e-06 2.085e-06 2.699e-06 0.00% Other 261 0.01895 0.02236 0.02496 0.59% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.256 4.258 4.258 100.00% Amr::coarseTimeStep() 10 3.813 3.813 3.813 89.55% Amr::timeStep() 10 3.8 3.801 3.802 89.29% Castro::advance() 10 3.784 3.785 3.785 88.89% Castro::subcycle_advance_ctu() 10 3.676 3.681 3.692 86.70% Castro::do_advance_ctu() 10 3.675 3.681 3.692 86.70% Castro::construct_ctu_hydro_source() 10 2.807 2.81 2.814 66.09% check_for_negative_density() 10 0.0332 0.2307 0.4807 11.29% Gravity::make_radial_gravity() 21 0.3293 0.3394 0.3578 8.40% AmrLevel::FillPatch() 41 0.2635 0.2759 0.289 6.79% Amr::writePlotFile() 2 0.2541 0.2544 0.2547 5.98% Castro::initialize_do_advance() 10 0.2232 0.2293 0.2351 5.52% FillPatchIterator::Initialize 41 0.219 0.2261 0.2341 5.50% Gravity::get_new_grav_vector() 11 0.2306 0.2323 0.233 5.47% Castro::construct_old_gravity() 10 0.1964 0.2047 0.2201 5.17% Gravity::get_old_grav_vector() 10 0.1958 0.204 0.2192 5.15% Amr::init() 1 0.2058 0.2061 0.2068 4.86% Castro::construct_new_gravity() 10 0.2025 0.2039 0.2046 4.81% Amr::initialInit() 1 0.183 0.1833 0.1838 4.32% Castro::expand_state() 10 0.1517 0.1596 0.1686 3.96% FillPatchIterator::FillFromLevel0() 41 0.1459 0.1513 0.159 3.73% FillPatchSingleLevel 41 0.1458 0.1512 0.1588 3.73% Amr::InitializeInit() 1 0.06207 0.1016 0.1505 3.53% Amr::defBaseLevel() 1 0.06207 0.1016 0.1505 3.53% Castro::clean_state() 62 0.119 0.1246 0.1298 3.05% Castro::initData() 1 0.04249 0.08115 0.1289 3.03% Castro::do_old_sources() 10 0.1203 0.1246 0.1269 2.98% FabArray::ParallelCopy() 41 0.1063 0.1121 0.1221 2.87% Amr::FinalizeInit() 1 0.033 0.08172 0.1211 2.84% amrex::Copy() 193 0.102 0.1122 0.1189 2.79% Castro::estTimeStep() 21 0.02303 0.0743 0.1137 2.67% Castro::initialize_advance() 10 0.08789 0.09887 0.1043 2.45% FabArray::setVal() 143 0.08593 0.09427 0.09786 2.30% Castro::computeInitialDt() 2 0.002546 0.05157 0.09104 2.14% Castro::do_new_sources() 10 0.07009 0.07468 0.07735 1.82% Castro::computeTemp() 63 0.06691 0.0697 0.07314 1.72% FabArray::ParallelCopy_finish() 41 0.04881 0.0554 0.07054 1.66% FabArray::ParallelCopy_nowait() 41 0.05141 0.05661 0.05899 1.39% Castro::reset_internal_energy(MultiFab) 63 0.04813 0.05006 0.0529 1.24% Castro::normalize_species() 62 0.04559 0.04868 0.05288 1.24% Castro::reset_internal_energy(Fab) 1008 0.04781 0.04973 0.05256 1.23% StateDataPhysBCFunct::() 41 0.03668 0.03894 0.04264 1.00% StateData::FillBoundary(geom) 41 0.03652 0.0388 0.04252 1.00% Castro::construct_new_source() 50 0.03489 0.03695 0.03827 0.90% Castro::construct_new_gravity_source() 10 0.02815 0.0295 0.03059 0.72% Castro::post_init() 1 0.02946 0.02967 0.03001 0.70% Gravity::interpolate_monopole_grav() 21 0.02662 0.02728 0.02841 0.67% FabArray::setDomainBndry() 41 0.01839 0.02034 0.02366 0.56% Castro::finalize_do_advance() 10 0.01262 0.01546 0.02118 0.50% VisMF::Write(FabArray) 2 0.01287 0.0153 0.01992 0.47% Castro::apply_source_to_state() 20 0.01489 0.01572 0.01704 0.40% FabArray::Saxpy() 20 0.01484 0.01566 0.01698 0.40% Castro::post_timestep() 10 0.0157 0.01624 0.01697 0.40% Castro::Castro() 1 0.01281 0.01362 0.01456 0.34% Castro::check_for_nan() 20 0.01282 0.01345 0.01407 0.33% MultiFab::contains_nan() 20 0.01279 0.01342 0.01404 0.33% Castro::construct_old_source() 50 0.01181 0.01326 0.01388 0.33% Castro::construct_old_gravity_source() 10 0.01173 0.01317 0.01379 0.32% Castro::initMFs() 1 0.009049 0.009646 0.01052 0.25% Castro::computeNewDt() 9 0.008633 0.00865 0.00867 0.20% Other 261 0.03056 0.03554 0.04011 0.94% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 29 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 11 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8670 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6782 KiB 6786 KiB 6787 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7136 KiB 7142 KiB 7144 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4313 KiB 4319 KiB 4332 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 237 KiB 249 KiB 262 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 19 KiB 21 KiB 25 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2664 KiB 2666 KiB 2667 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 197 KiB 203 KiB 214 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 41 KiB 44 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 69 KiB 70 KiB 70 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 59 KiB 61 KiB 66 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.02-23-g06b4a5b105f5) finalized