Initializing AMReX (25.02-23-g06b4a5b105f5)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.02-23-g06b4a5b105f5) initialized Starting run at 06:19:33 UTC on 2025-02-28. Successfully read inputs file ... Castro git describe: 25.02-6-g9e378e709 AMReX git describe: 25.02-23-g06b4a5b10 Microphysics git describe: 25.02-30-g606c510e reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013982691 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.340823963 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.330870678 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.310827156 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.311322914 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.348971713 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.305086008 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.294160392 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.296001409 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.296440399 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.296277404 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007334404 seconds Ending run at 06:19:36 UTC on 2025-02-28. Run time = 3.317285364 Run time without initialization = 3.142918179 Average number of zones advanced per microsecond: 0.834 Average number of zones advanced per microsecond per rank: 0.104 TinyProfiler total time across processes [min...avg...max]: 3.3159 ... 3.3164 ... 3.3175 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1803 2.2142 2.2604 68.14% Gravity::make_radial_gravity() 21 0.2829 0.2915 0.3033 9.14% check_for_negative_density() 10 0.02562 0.07569 0.1114 3.36% Castro::initData() 1 0.03883 0.07475 0.1108 3.34% Castro::estTimeStep() 21 0.02317 0.06462 0.09792 2.95% FabArray::ParallelCopy_finish() 41 0.03521 0.04672 0.08724 2.63% amrex::Copy() 193 0.0643 0.07801 0.08671 2.61% FabArray::setVal() 143 0.05456 0.06638 0.07246 2.18% Castro::normalize_species() 62 0.04489 0.04728 0.04977 1.50% Castro::reset_internal_energy(Fab) 1008 0.04448 0.04639 0.04819 1.45% FabArray::ParallelCopy_nowait() 41 0.03654 0.04107 0.04321 1.30% StateData::FillBoundary(geom) 41 0.02975 0.03171 0.03455 1.04% FillPatchIterator::Initialize 41 0.02761 0.03195 0.0344 1.04% Gravity::interpolate_monopole_grav() 21 0.02639 0.02659 0.02677 0.81% Castro::construct_new_gravity_source() 10 0.02325 0.02431 0.0264 0.80% Castro::computeTemp() 63 0.0177 0.01815 0.01864 0.56% Castro::initialize_do_advance() 10 0.01188 0.01643 0.01736 0.52% Castro::initialize_advance() 10 0.00526 0.01123 0.01338 0.40% FabArray::Saxpy() 20 0.0102 0.01221 0.01335 0.40% Amr::writePlotFile() 2 0.007162 0.009765 0.01207 0.36% MultiFab::contains_nan() 20 0.009937 0.01099 0.01205 0.36% VisMF::Write(FabArray) 2 0.008325 0.009241 0.01161 0.35% FabArray::setDomainBndry() 41 0.007848 0.009797 0.01113 0.34% Castro::construct_old_gravity_source() 10 0.007211 0.00954 0.01036 0.31% Castro::initMFs() 1 0.00654 0.00714 0.007502 0.23% Castro::enforce_min_density() 62 0.005567 0.006026 0.006887 0.21% Castro::construct_new_source() 50 0.005789 0.006187 0.006451 0.19% Gravity::get_new_grav_vector() 11 0.002847 0.003473 0.003984 0.12% main() 1 0.003643 0.003805 0.003941 0.12% Amr::coarseTimeStep() 10 0.001868 0.002737 0.003729 0.11% Gravity::get_old_grav_vector() 10 0.001756 0.002114 0.002744 0.08% Castro::finalize_do_advance() 10 0.0004731 0.001096 0.001288 0.04% AmrLevel::FillPatch() 41 0.0006567 0.0007888 0.0008558 0.03% Amr::timeStep() 10 0.000126 0.0001852 0.0004109 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002761 0.0002972 0.0003078 0.01% Castro::do_advance_ctu() 10 0.0001376 0.0001695 0.0002035 0.01% Castro::clean_state() 62 0.0001223 0.0001495 0.0001769 0.01% StateDataPhysBCFunct::() 41 9.513e-05 0.0001107 0.0001355 0.00% FillPatchIterator::FillFromLevel0() 41 9.778e-05 0.00011 0.0001244 0.00% FabArray::ParallelCopy() 41 8.779e-05 9.667e-05 0.0001131 0.00% Castro::do_old_sources() 10 6.336e-05 9.359e-05 0.0001087 0.00% Castro::Castro() 1 4.76e-05 6.716e-05 8.026e-05 0.00% Castro::construct_old_source() 50 5.809e-05 6.877e-05 8.01e-05 0.00% FillPatchSingleLevel 41 6.16e-05 6.859e-05 7.841e-05 0.00% Amr::FinalizeInit() 1 3.403e-06 1.258e-05 7.164e-05 0.00% Castro::do_new_sources() 10 5.382e-05 6.323e-05 6.882e-05 0.00% Castro::apply_source_to_state() 20 3.779e-05 5.031e-05 6.191e-05 0.00% Castro::advance() 10 3.547e-05 4.72e-05 5.442e-05 0.00% Amr::defBaseLevel() 1 3.754e-05 4.488e-05 5.355e-05 0.00% Castro::construct_old_gravity() 10 3.487e-05 4.108e-05 5.278e-05 0.00% Castro::subcycle_advance_ctu() 10 4.114e-05 4.599e-05 5.155e-05 0.00% Castro::construct_new_gravity() 10 2.765e-05 3.366e-05 4.025e-05 0.00% Castro::expand_state() 10 1.845e-05 2.472e-05 3.269e-05 0.00% Castro::check_for_nan() 20 2.347e-05 2.6e-05 2.845e-05 0.00% Castro::post_timestep() 10 1.512e-05 1.716e-05 2.109e-05 0.00% Castro::post_init() 1 1.335e-05 1.418e-05 1.534e-05 0.00% Castro::computeNewDt() 9 8.586e-06 9.856e-06 1.315e-05 0.00% Amr::InitializeInit() 1 2.5e-06 3.278e-06 5.853e-06 0.00% Castro::computeInitialDt() 2 3.146e-06 3.616e-06 4.426e-06 0.00% Amr::init() 1 1.552e-06 2.127e-06 2.894e-06 0.00% Amr::initialInit() 1 1.55e-06 1.719e-06 1.82e-06 0.00% Other 199 0.01025 0.01266 0.01464 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.316 3.316 3.317 100.00% Amr::coarseTimeStep() 10 3.132 3.132 3.132 94.40% Amr::timeStep() 10 3.118 3.119 3.12 94.05% Castro::advance() 10 3.102 3.103 3.103 93.54% Castro::subcycle_advance_ctu() 10 3.026 3.03 3.046 91.82% Castro::do_advance_ctu() 10 3.026 3.03 3.046 91.82% Castro::construct_ctu_hydro_source() 10 2.308 2.311 2.313 69.74% Gravity::make_radial_gravity() 21 0.2991 0.3077 0.3161 9.53% AmrLevel::FillPatch() 41 0.1799 0.1933 0.217 6.54% Gravity::get_new_grav_vector() 11 0.2051 0.2064 0.2082 6.28% FillPatchIterator::Initialize 41 0.1515 0.1617 0.191 5.76% Castro::construct_old_gravity() 10 0.1758 0.1812 0.1888 5.69% Gravity::get_old_grav_vector() 10 0.1751 0.1805 0.1881 5.67% Castro::construct_new_gravity() 10 0.1829 0.1842 0.1854 5.59% Amr::init() 1 0.1728 0.1732 0.1742 5.25% Castro::initialize_do_advance() 10 0.156 0.161 0.1705 5.14% Amr::initialInit() 1 0.1586 0.159 0.1599 4.82% FillPatchIterator::FillFromLevel0() 41 0.1122 0.12 0.1555 4.69% FillPatchSingleLevel 41 0.112 0.1199 0.1554 4.68% Amr::InitializeInit() 1 0.05863 0.09619 0.1327 4.00% Amr::defBaseLevel() 1 0.05863 0.09619 0.1327 4.00% FabArray::ParallelCopy() 41 0.07769 0.08796 0.124 3.74% Castro::expand_state() 10 0.1016 0.1084 0.1231 3.71% Castro::clean_state() 62 0.1131 0.1174 0.122 3.68% Castro::initData() 1 0.04237 0.07856 0.1146 3.45% check_for_negative_density() 10 0.02562 0.07569 0.1114 3.36% Amr::FinalizeInit() 1 0.02608 0.06282 0.1013 3.05% Castro::estTimeStep() 21 0.02317 0.06462 0.09792 2.95% Castro::do_old_sources() 10 0.08979 0.09373 0.09605 2.90% FabArray::ParallelCopy_finish() 41 0.03521 0.04672 0.08724 2.63% amrex::Copy() 193 0.0643 0.07801 0.08671 2.61% Castro::computeInitialDt() 2 0.002165 0.0389 0.07727 2.33% Castro::initialize_advance() 10 0.05258 0.06933 0.07359 2.22% FabArray::setVal() 143 0.05456 0.06638 0.07246 2.18% Castro::do_new_sources() 10 0.06126 0.06454 0.06981 2.10% Castro::computeTemp() 63 0.06246 0.06483 0.06691 2.02% Castro::normalize_species() 62 0.04489 0.04728 0.04977 1.50% Castro::reset_internal_energy(MultiFab) 63 0.04476 0.04668 0.04849 1.46% Castro::reset_internal_energy(Fab) 1008 0.04448 0.04639 0.04819 1.45% FabArray::ParallelCopy_nowait() 41 0.03663 0.04115 0.04329 1.30% StateDataPhysBCFunct::() 41 0.02985 0.03182 0.03468 1.05% StateData::FillBoundary(geom) 41 0.02975 0.03171 0.03455 1.04% Castro::construct_new_source() 50 0.02912 0.0305 0.03285 0.99% Gravity::interpolate_monopole_grav() 21 0.02639 0.02659 0.02677 0.81% Castro::construct_new_gravity_source() 10 0.02325 0.02431 0.0264 0.80% Castro::post_init() 1 0.02323 0.02338 0.02355 0.71% Castro::finalize_do_advance() 10 0.01343 0.01828 0.02246 0.68% Amr::writePlotFile() 2 0.02154 0.02165 0.02208 0.67% Castro::post_timestep() 10 0.01532 0.01624 0.01699 0.51% Castro::apply_source_to_state() 20 0.01024 0.01226 0.0134 0.40% FabArray::Saxpy() 20 0.0102 0.01221 0.01335 0.40% Castro::check_for_nan() 20 0.009963 0.01102 0.01208 0.36% MultiFab::contains_nan() 20 0.009937 0.01099 0.01205 0.36% Castro::Castro() 1 0.009524 0.01112 0.01201 0.36% VisMF::Write(FabArray) 2 0.008325 0.009241 0.01161 0.35% FabArray::setDomainBndry() 41 0.007848 0.009797 0.01113 0.34% Castro::construct_old_source() 50 0.007269 0.009609 0.01043 0.31% Castro::construct_old_gravity_source() 10 0.007211 0.00954 0.01036 0.31% Castro::computeNewDt() 9 0.008536 0.008554 0.008566 0.26% Castro::initMFs() 1 0.00654 0.00714 0.007502 0.23% Castro::enforce_min_density() 62 0.005567 0.006026 0.006887 0.21% Other 199 0.02007 0.02417 0.02775 0.84% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 35 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8655 KiB 8669 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6750 KiB 6762 KiB 6765 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7127 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4556 KiB 4564 KiB 4589 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 204 KiB 220 KiB 249 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2800 KiB 2806 KiB 2807 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 230 KiB 236 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 40 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 69 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.02-23-g06b4a5b105f5) finalized