Initializing AMReX (25.03)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03) initialized Starting run at 06:18:59 UTC on 2025-03-03. Successfully read inputs file ... Castro git describe: 25.03-1-g8022f1878 AMReX git describe: 25.03 Microphysics git describe: 25.03 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015643534 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.341362637 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.338552715 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.346013128 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.31687703 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.36579106 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.310326948 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.304702345 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.300459874 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.3059399 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.302091398 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008304221 seconds Ending run at 06:19:03 UTC on 2025-03-03. Run time = 3.416378898 Run time without initialization = 3.246515109 Average number of zones advanced per microsecond: 0.807 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4145 ... 3.4152 ... 3.4165 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2082 2.2461 2.2974 67.25% Gravity::make_radial_gravity() 21 0.2921 0.2966 0.3059 8.95% check_for_negative_density() 10 0.0446 0.09352 0.1289 3.77% Castro::initData() 1 0.03723 0.07337 0.1017 2.98% amrex::Copy() 193 0.07288 0.08693 0.1003 2.94% Castro::estTimeStep() 21 0.02397 0.05573 0.09516 2.79% FabArray::ParallelCopy_finish() 41 0.04474 0.06262 0.09074 2.66% FabArray::setVal() 143 0.07087 0.07798 0.08263 2.42% Castro::normalize_species() 62 0.04768 0.05031 0.05412 1.58% Castro::reset_internal_energy(Fab) 1008 0.04149 0.04546 0.04785 1.40% FabArray::ParallelCopy_nowait() 41 0.03789 0.04346 0.04748 1.39% FillPatchIterator::Initialize 41 0.02761 0.0346 0.0376 1.10% StateData::FillBoundary(geom) 41 0.02989 0.03256 0.03572 1.05% Gravity::interpolate_monopole_grav() 21 0.02651 0.02678 0.02709 0.79% Castro::construct_new_gravity_source() 10 0.02349 0.02449 0.02644 0.77% Castro::computeTemp() 63 0.01705 0.01816 0.01887 0.55% Castro::initialize_do_advance() 10 0.01287 0.017 0.0183 0.54% Castro::initialize_advance() 10 0.01431 0.01476 0.01541 0.45% FabArray::Saxpy() 20 0.01314 0.01364 0.0145 0.42% MultiFab::contains_nan() 20 0.01041 0.01162 0.01331 0.39% VisMF::Write(FabArray) 2 0.009169 0.009824 0.01288 0.38% Amr::writePlotFile() 2 0.008211 0.01116 0.01195 0.35% FabArray::setDomainBndry() 41 0.007526 0.0101 0.01148 0.34% Castro::construct_old_gravity_source() 10 0.007386 0.009412 0.01022 0.30% Castro::initMFs() 1 0.006405 0.006955 0.007921 0.23% Castro::enforce_min_density() 62 0.005932 0.006213 0.006488 0.19% Castro::construct_new_source() 50 0.006069 0.006335 0.006459 0.19% main() 1 0.004883 0.005214 0.00569 0.17% Gravity::get_new_grav_vector() 11 0.00308 0.003532 0.003907 0.11% Gravity::get_old_grav_vector() 10 0.001651 0.002179 0.00259 0.08% Amr::coarseTimeStep() 10 0.001474 0.001873 0.002525 0.07% Castro::finalize_do_advance() 10 0.0005114 0.001033 0.001173 0.03% AmrLevel::FillPatch() 41 0.0008002 0.0008897 0.0009608 0.03% Amr::timeStep() 10 0.0001462 0.0001819 0.0003173 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002874 0.0002981 0.0003149 0.01% Castro::do_advance_ctu() 10 0.0001455 0.0001665 0.0001876 0.01% StateDataPhysBCFunct::() 41 0.0001041 0.0001284 0.0001855 0.01% Castro::clean_state() 62 0.0001419 0.0001555 0.0001759 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001038 0.0001146 0.0001257 0.00% FabArray::ParallelCopy() 41 8.763e-05 9.72e-05 0.0001177 0.00% Castro::do_old_sources() 10 7.916e-05 9.927e-05 0.0001135 0.00% Amr::FinalizeInit() 1 3.747e-06 1.635e-05 9.74e-05 0.00% FillPatchSingleLevel 41 6.67e-05 7.077e-05 8.203e-05 0.00% Castro::construct_old_source() 50 4.925e-05 6.942e-05 8.197e-05 0.00% Castro::do_new_sources() 10 5.929e-05 6.643e-05 7.945e-05 0.00% Castro::Castro() 1 5.155e-05 6.289e-05 7.423e-05 0.00% Castro::advance() 10 4.59e-05 5.118e-05 6.234e-05 0.00% Castro::apply_source_to_state() 20 4.312e-05 5.326e-05 6.023e-05 0.00% Castro::subcycle_advance_ctu() 10 4.342e-05 4.895e-05 5.729e-05 0.00% Castro::construct_old_gravity() 10 3.503e-05 4.324e-05 5.529e-05 0.00% Amr::defBaseLevel() 1 4.145e-05 4.655e-05 5.383e-05 0.00% Castro::construct_new_gravity() 10 3.16e-05 3.635e-05 4.536e-05 0.00% Castro::post_init() 1 1.357e-05 1.916e-05 3.051e-05 0.00% Castro::expand_state() 10 1.999e-05 2.374e-05 2.962e-05 0.00% Castro::check_for_nan() 20 2.407e-05 2.669e-05 2.855e-05 0.00% Castro::post_timestep() 10 1.481e-05 1.687e-05 2.032e-05 0.00% Castro::computeNewDt() 9 9.303e-06 1.004e-05 1.123e-05 0.00% Amr::initialInit() 1 1.41e-06 2.65e-06 7.979e-06 0.00% Amr::InitializeInit() 1 2.461e-06 3.206e-06 6.496e-06 0.00% Castro::computeInitialDt() 2 3.435e-06 3.954e-06 4.771e-06 0.00% Amr::init() 1 1.839e-06 2.259e-06 3.062e-06 0.00% Other 199 0.01028 0.01283 0.01523 0.45% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.414 3.415 3.416 100.00% Amr::coarseTimeStep() 10 3.233 3.233 3.233 94.62% Amr::timeStep() 10 3.22 3.22 3.221 94.27% Castro::advance() 10 3.203 3.204 3.204 93.79% Castro::subcycle_advance_ctu() 10 3.113 3.115 3.122 91.37% Castro::do_advance_ctu() 10 3.113 3.115 3.122 91.37% Castro::construct_ctu_hydro_source() 10 2.358 2.362 2.364 69.21% Gravity::make_radial_gravity() 21 0.3099 0.3143 0.3211 9.40% AmrLevel::FillPatch() 41 0.2024 0.2177 0.2257 6.61% Gravity::get_new_grav_vector() 11 0.2096 0.2102 0.2116 6.19% Castro::construct_old_gravity() 10 0.1939 0.1977 0.2048 5.99% Gravity::get_old_grav_vector() 10 0.1933 0.197 0.2039 5.97% FillPatchIterator::Initialize 41 0.1675 0.1839 0.1971 5.77% Castro::construct_new_gravity() 10 0.1836 0.1847 0.1857 5.44% Amr::init() 1 0.1682 0.1687 0.1694 4.96% Castro::initialize_do_advance() 10 0.1596 0.1646 0.1688 4.94% FillPatchIterator::FillFromLevel0() 41 0.1194 0.1391 0.1617 4.73% FillPatchSingleLevel 41 0.1193 0.139 0.1616 4.73% Amr::initialInit() 1 0.1524 0.153 0.1537 4.50% check_for_negative_density() 10 0.0446 0.09352 0.1289 3.77% FabArray::ParallelCopy() 41 0.08726 0.1063 0.1288 3.77% Castro::clean_state() 62 0.1151 0.1197 0.1237 3.62% Amr::InitializeInit() 1 0.05766 0.09425 0.1229 3.60% Amr::defBaseLevel() 1 0.05766 0.09425 0.1229 3.60% Castro::expand_state() 10 0.1088 0.1106 0.1133 3.32% Castro::do_old_sources() 10 0.1003 0.1069 0.1114 3.26% Castro::initData() 1 0.04108 0.07725 0.1053 3.08% amrex::Copy() 193 0.07288 0.08693 0.1003 2.94% Amr::FinalizeInit() 1 0.0296 0.05876 0.09605 2.81% Castro::estTimeStep() 21 0.02397 0.05573 0.09516 2.79% FabArray::ParallelCopy_finish() 41 0.04474 0.06262 0.09074 2.66% Castro::initialize_advance() 10 0.07852 0.08465 0.08743 2.56% FabArray::setVal() 143 0.07087 0.07798 0.08263 2.42% Castro::computeInitialDt() 2 0.002307 0.03135 0.06853 2.01% Castro::do_new_sources() 10 0.06277 0.06491 0.06773 1.98% Castro::computeTemp() 63 0.0589 0.06391 0.06678 1.95% Castro::normalize_species() 62 0.04768 0.05031 0.05412 1.58% Castro::reset_internal_energy(MultiFab) 63 0.04179 0.04575 0.04814 1.41% Castro::reset_internal_energy(Fab) 1008 0.04149 0.04546 0.04785 1.40% FabArray::ParallelCopy_nowait() 41 0.03798 0.04355 0.04756 1.39% StateDataPhysBCFunct::() 41 0.03001 0.03269 0.03591 1.05% StateData::FillBoundary(geom) 41 0.02989 0.03256 0.03572 1.05% Castro::construct_new_source() 50 0.02995 0.03083 0.03285 0.96% Castro::post_init() 1 0.02671 0.02691 0.02716 0.79% Gravity::interpolate_monopole_grav() 21 0.02651 0.02678 0.02709 0.79% Castro::construct_new_gravity_source() 10 0.02349 0.02449 0.02644 0.77% Amr::writePlotFile() 2 0.02388 0.02411 0.02423 0.71% Castro::finalize_do_advance() 10 0.01367 0.0164 0.01874 0.55% Castro::post_timestep() 10 0.01581 0.01636 0.01664 0.49% Castro::apply_source_to_state() 20 0.01318 0.01369 0.01456 0.43% FabArray::Saxpy() 20 0.01314 0.01364 0.0145 0.42% Castro::check_for_nan() 20 0.01043 0.01164 0.01334 0.39% MultiFab::contains_nan() 20 0.01041 0.01162 0.01331 0.39% VisMF::Write(FabArray) 2 0.009169 0.009824 0.01288 0.38% Castro::Castro() 1 0.01001 0.01067 0.01148 0.34% FabArray::setDomainBndry() 41 0.007526 0.0101 0.01148 0.34% Castro::construct_old_source() 50 0.007436 0.009481 0.01029 0.30% Castro::construct_old_gravity_source() 10 0.007386 0.009412 0.01022 0.30% Castro::computeNewDt() 9 0.009008 0.00903 0.009049 0.26% Castro::initMFs() 1 0.006405 0.006955 0.007921 0.23% Castro::enforce_min_density() 62 0.005932 0.006213 0.006488 0.19% Other 199 0.02081 0.0247 0.02892 0.85% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 33 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8668 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6773 KiB 6780 KiB 6783 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4553 KiB 4557 KiB 4561 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 220 KiB 230 KiB 238 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2810 KiB 2813 KiB 2814 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 231 KiB 234 KiB 239 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 43 KiB 52 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 72 KiB 74 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03) finalized