Initializing AMReX (25.03)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03) initialized Starting run at 06:18:45 UTC on 2025-03-04. Successfully read inputs file ... Castro git describe: 25.03-1-g8022f1878 AMReX git describe: 25.03 Microphysics git describe: 25.03 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016777437 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.36822458 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.36433788 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.369676746 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.393459051 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.373497782 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.371906768 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.372607945 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.371898299 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.370466822 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.373037142 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012708446 seconds Ending run at 06:18:49 UTC on 2025-03-04. Run time = 3.922929043 Run time without initialization = 3.75068694 Average number of zones advanced per microsecond: 0.699 Average number of zones advanced per microsecond per rank: 0.087 TinyProfiler total time across processes [min...avg...max]: 3.9183 ... 3.9205 ... 3.9230 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3236 2.4933 2.6791 68.29% check_for_negative_density() 10 0.01562 0.2089 0.3898 9.94% Gravity::make_radial_gravity() 21 0.2941 0.3099 0.3267 8.33% amrex::Copy() 193 0.09631 0.1091 0.1196 3.05% Castro::initData() 1 0.039 0.07203 0.1051 2.68% Castro::estTimeStep() 21 0.02137 0.06084 0.09975 2.54% FabArray::setVal() 143 0.08932 0.09474 0.09925 2.53% FabArray::ParallelCopy_nowait() 41 0.05688 0.0606 0.06449 1.64% FabArray::ParallelCopy_finish() 41 0.05037 0.0568 0.06308 1.61% FillPatchIterator::Initialize 41 0.04526 0.05234 0.05801 1.48% Castro::reset_internal_energy(Fab) 1008 0.04784 0.04982 0.05228 1.33% Castro::normalize_species() 62 0.04634 0.04774 0.04968 1.27% StateData::FillBoundary(geom) 41 0.03496 0.03912 0.04594 1.17% Castro::construct_new_gravity_source() 10 0.02918 0.03197 0.03494 0.89% Gravity::interpolate_monopole_grav() 21 0.02662 0.02707 0.02759 0.70% Castro::initialize_do_advance() 10 0.02242 0.02463 0.02618 0.67% FabArray::Saxpy() 20 0.01643 0.01824 0.02049 0.52% Castro::computeTemp() 63 0.01858 0.0194 0.02013 0.51% FabArray::setDomainBndry() 41 0.01524 0.01753 0.01903 0.48% MultiFab::contains_nan() 20 0.01211 0.01446 0.01682 0.43% VisMF::Write(FabArray) 2 0.01007 0.01145 0.01593 0.41% Castro::initialize_advance() 10 0.01472 0.01508 0.01567 0.40% Amr::writePlotFile() 2 0.01017 0.01393 0.01539 0.39% Castro::construct_old_gravity_source() 10 0.01391 0.01468 0.01501 0.38% Castro::construct_new_source() 50 0.006981 0.007847 0.008509 0.22% main() 1 0.004887 0.006788 0.008347 0.21% Castro::initMFs() 1 0.006821 0.0072 0.008118 0.21% Gravity::get_new_grav_vector() 11 0.004198 0.005102 0.006154 0.16% Gravity::get_old_grav_vector() 10 0.002629 0.003029 0.00347 0.09% Amr::coarseTimeStep() 10 0.001008 0.001955 0.002818 0.07% Castro::finalize_do_advance() 10 0.001342 0.001442 0.001868 0.05% AmrLevel::FillPatch() 41 0.00111 0.001276 0.001359 0.03% Castro::reset_internal_energy(MultiFab) 63 0.0003041 0.0003229 0.0003416 0.01% Amr::timeStep() 10 0.0001513 0.000197 0.000331 0.01% Castro::do_advance_ctu() 10 0.0001697 0.0002147 0.0002601 0.01% Castro::clean_state() 62 0.0001674 0.0001872 0.0002163 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001269 0.0001495 0.0001677 0.00% StateDataPhysBCFunct::() 41 0.0001272 0.0001399 0.00016 0.00% Castro::do_old_sources() 10 9.975e-05 0.0001244 0.00014 0.00% FabArray::ParallelCopy() 41 0.0001025 0.000124 0.0001339 0.00% Castro::construct_old_source() 50 8.238e-05 9.307e-05 0.0001047 0.00% FillPatchSingleLevel 41 8.383e-05 9.228e-05 9.948e-05 0.00% Amr::FinalizeInit() 1 3.729e-06 1.556e-05 9.195e-05 0.00% Castro::do_new_sources() 10 6.829e-05 7.973e-05 9.003e-05 0.00% Castro::Castro() 1 4.645e-05 7.057e-05 8.801e-05 0.00% Castro::apply_source_to_state() 20 6.127e-05 7.081e-05 8.734e-05 0.00% Castro::subcycle_advance_ctu() 10 4.674e-05 6.408e-05 8.06e-05 0.00% Castro::advance() 10 4.304e-05 5.893e-05 7.043e-05 0.00% Amr::defBaseLevel() 1 4.57e-05 5.202e-05 6.078e-05 0.00% Castro::construct_new_gravity() 10 3.139e-05 4.264e-05 5.839e-05 0.00% Castro::construct_old_gravity() 10 4.14e-05 5.04e-05 5.626e-05 0.00% Castro::expand_state() 10 3.727e-05 4.362e-05 5.595e-05 0.00% Castro::check_for_nan() 20 2.622e-05 3.233e-05 3.826e-05 0.00% Castro::post_timestep() 10 1.591e-05 1.982e-05 2.225e-05 0.00% Castro::post_init() 1 1.481e-05 1.697e-05 1.987e-05 0.00% Castro::computeNewDt() 9 9.001e-06 1.049e-05 1.241e-05 0.00% Amr::InitializeInit() 1 2.422e-06 3.133e-06 5.951e-06 0.00% Castro::computeInitialDt() 2 3.263e-06 3.73e-06 4.49e-06 0.00% Amr::init() 1 1.526e-06 2.128e-06 3.499e-06 0.00% Amr::initialInit() 1 1.494e-06 1.924e-06 2.263e-06 0.00% Other 261 0.01662 0.01992 0.02255 0.57% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.918 3.921 3.923 100.00% Amr::coarseTimeStep() 10 3.73 3.73 3.73 95.07% Amr::timeStep() 10 3.717 3.718 3.719 94.80% Castro::advance() 10 3.701 3.702 3.703 94.39% Castro::subcycle_advance_ctu() 10 3.602 3.603 3.604 91.87% Castro::do_advance_ctu() 10 3.601 3.603 3.604 91.87% Castro::construct_ctu_hydro_source() 10 2.719 2.725 2.737 69.78% check_for_negative_density() 10 0.01562 0.2089 0.3898 9.94% Gravity::make_radial_gravity() 21 0.3157 0.3317 0.3495 8.91% AmrLevel::FillPatch() 41 0.254 0.2735 0.2928 7.46% FillPatchIterator::Initialize 41 0.2133 0.227 0.2403 6.12% Castro::initialize_do_advance() 10 0.2075 0.2237 0.2371 6.04% Gravity::get_new_grav_vector() 11 0.226 0.2271 0.2283 5.82% Castro::construct_old_gravity() 10 0.1906 0.2027 0.2178 5.55% Gravity::get_old_grav_vector() 10 0.1897 0.2018 0.2171 5.53% Castro::construct_new_gravity() 10 0.2028 0.2043 0.2051 5.23% Amr::init() 1 0.1706 0.1709 0.1717 4.38% Castro::expand_state() 10 0.1387 0.155 0.1691 4.31% FillPatchIterator::FillFromLevel0() 41 0.1513 0.1571 0.1645 4.19% FillPatchSingleLevel 41 0.1512 0.157 0.1643 4.19% Amr::initialInit() 1 0.1536 0.154 0.1548 3.95% Castro::do_old_sources() 10 0.1243 0.1306 0.1344 3.43% Amr::InitializeInit() 1 0.06034 0.09326 0.1269 3.24% Amr::defBaseLevel() 1 0.06033 0.09326 0.1269 3.24% Castro::clean_state() 62 0.1214 0.1238 0.1258 3.21% FabArray::ParallelCopy() 41 0.1136 0.1176 0.125 3.19% amrex::Copy() 193 0.09631 0.1091 0.1196 3.05% Castro::initData() 1 0.04285 0.0758 0.1086 2.77% Castro::estTimeStep() 21 0.02137 0.06084 0.09975 2.54% FabArray::setVal() 143 0.08932 0.09474 0.09925 2.53% Castro::initialize_advance() 10 0.09314 0.09446 0.09568 2.44% Amr::FinalizeInit() 1 0.02674 0.06074 0.09445 2.41% Castro::do_new_sources() 10 0.07242 0.07843 0.08294 2.11% Castro::computeTemp() 63 0.06683 0.06954 0.07261 1.85% Castro::computeInitialDt() 2 0.002095 0.03616 0.06987 1.78% FabArray::ParallelCopy_nowait() 41 0.05699 0.06071 0.06458 1.65% FabArray::ParallelCopy_finish() 41 0.05037 0.0568 0.06308 1.61% Castro::reset_internal_energy(MultiFab) 63 0.04815 0.05014 0.05262 1.34% Castro::reset_internal_energy(Fab) 1008 0.04784 0.04982 0.05228 1.33% Castro::normalize_species() 62 0.04634 0.04774 0.04968 1.27% StateDataPhysBCFunct::() 41 0.03509 0.03926 0.0461 1.18% StateData::FillBoundary(geom) 41 0.03496 0.03912 0.04594 1.17% Castro::construct_new_source() 50 0.03616 0.03981 0.04341 1.11% Castro::construct_new_gravity_source() 10 0.02918 0.03197 0.03494 0.89% Amr::writePlotFile() 2 0.02968 0.02973 0.02981 0.76% Gravity::interpolate_monopole_grav() 21 0.02662 0.02707 0.02759 0.70% Castro::finalize_do_advance() 10 0.01136 0.01768 0.02658 0.68% Castro::post_init() 1 0.0239 0.02403 0.02419 0.62% Castro::apply_source_to_state() 20 0.01649 0.01831 0.02058 0.52% FabArray::Saxpy() 20 0.01643 0.01824 0.02049 0.52% FabArray::setDomainBndry() 41 0.01524 0.01753 0.01903 0.48% Castro::check_for_nan() 20 0.01214 0.01449 0.01686 0.43% MultiFab::contains_nan() 20 0.01211 0.01446 0.01682 0.43% Castro::post_timestep() 10 0.01564 0.01598 0.01628 0.41% VisMF::Write(FabArray) 2 0.01007 0.01145 0.01593 0.41% Castro::construct_old_source() 50 0.01401 0.01477 0.0151 0.38% Castro::construct_old_gravity_source() 10 0.01391 0.01468 0.01501 0.38% Castro::Castro() 1 0.01064 0.0112 0.01193 0.30% Castro::computeNewDt() 9 0.008454 0.00846 0.008468 0.22% Castro::initMFs() 1 0.006821 0.0072 0.008118 0.21% Other 261 0.02776 0.03242 0.03711 0.95% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 29 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8668 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6815 KiB 6821 KiB 6822 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7138 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4585 KiB 4589 KiB 4592 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 245 KiB 266 KiB 287 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 18 KiB 23 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2828 KiB 2831 KiB 2832 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 204 KiB 215 KiB 227 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 44 KiB 46 KiB 51 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 74 KiB 74 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 62 KiB 66 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03) finalized