Initializing AMReX (25.03)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03) initialized Starting run at 06:21:35 UTC on 2025-03-05. Successfully read inputs file ... Castro git describe: 25.03-3-gbef35aa7b AMReX git describe: 25.03 Microphysics git describe: 25.03 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01992702 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.409413327 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.373675578 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.370177278 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.390238354 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.369283639 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.402602522 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.368998704 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.369454069 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.369757643 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.372758727 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012610202 seconds Ending run at 06:21:39 UTC on 2025-03-05. Run time = 4.006423575 Run time without initialization = 3.817256669 Average number of zones advanced per microsecond: 0.687 Average number of zones advanced per microsecond per rank: 0.086 TinyProfiler total time across processes [min...avg...max]: 4.0043 ... 4.0056 ... 4.0065 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3468 2.5317 2.6916 67.18% check_for_negative_density() 10 0.04104 0.2064 0.3985 9.95% Gravity::make_radial_gravity() 21 0.297 0.3142 0.3332 8.32% amrex::Copy() 193 0.09785 0.1155 0.1293 3.23% FabArray::setVal() 143 0.09835 0.1022 0.1063 2.65% Castro::initData() 1 0.03699 0.07139 0.1044 2.61% Castro::estTimeStep() 21 0.03219 0.06127 0.09302 2.32% FabArray::ParallelCopy_finish() 41 0.0557 0.06318 0.07983 1.99% FabArray::ParallelCopy_nowait() 41 0.05943 0.06333 0.06884 1.72% FillPatchIterator::Initialize 41 0.04929 0.05577 0.06247 1.56% Castro::reset_internal_energy(Fab) 1008 0.04691 0.04949 0.05157 1.29% Castro::normalize_species() 62 0.04591 0.04766 0.0489 1.22% StateData::FillBoundary(geom) 41 0.03454 0.03988 0.04483 1.12% Castro::construct_new_gravity_source() 10 0.03013 0.03242 0.0356 0.89% Castro::initialize_do_advance() 10 0.02386 0.02632 0.02826 0.71% Gravity::interpolate_monopole_grav() 21 0.0264 0.02705 0.02774 0.69% FabArray::setDomainBndry() 41 0.01855 0.02027 0.02163 0.54% FabArray::Saxpy() 20 0.01778 0.01932 0.02105 0.53% Castro::computeTemp() 63 0.01798 0.01947 0.02044 0.51% Amr::writePlotFile() 2 0.01016 0.01447 0.0181 0.45% VisMF::Write(FabArray) 2 0.01182 0.01324 0.01713 0.43% Castro::initialize_advance() 10 0.01522 0.01603 0.01668 0.42% Castro::construct_old_gravity_source() 10 0.01549 0.01587 0.01612 0.40% MultiFab::contains_nan() 20 0.01189 0.01471 0.01597 0.40% Castro::initMFs() 1 0.008945 0.009682 0.01165 0.29% Castro::construct_new_source() 50 0.007196 0.008295 0.009231 0.23% Castro::enforce_min_density() 62 0.006461 0.007394 0.00802 0.20% main() 1 0.005238 0.006836 0.007562 0.19% Gravity::get_new_grav_vector() 11 0.00452 0.005541 0.006398 0.16% Gravity::get_old_grav_vector() 10 0.002763 0.003017 0.00331 0.08% Amr::coarseTimeStep() 10 0.001038 0.001768 0.002515 0.06% Castro::finalize_do_advance() 10 0.001302 0.001382 0.001439 0.04% AmrLevel::FillPatch() 41 0.001064 0.00124 0.001428 0.04% Amr::timeStep() 10 0.0001513 0.0002033 0.0003938 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003143 0.0003411 0.0003798 0.01% Castro::do_advance_ctu() 10 0.0001757 0.0002132 0.0002673 0.01% Castro::clean_state() 62 0.0001707 0.000195 0.0002167 0.01% StateDataPhysBCFunct::() 41 0.0001276 0.000145 0.000177 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001464 0.0001548 0.0001693 0.00% Castro::Castro() 1 6.557e-05 0.0001237 0.0001574 0.00% Castro::do_old_sources() 10 0.0001023 0.0001275 0.0001446 0.00% FabArray::ParallelCopy() 41 0.0001103 0.0001285 0.0001399 0.00% Castro::construct_old_source() 50 8.17e-05 0.0001021 0.000135 0.00% FillPatchSingleLevel 41 8.819e-05 9.704e-05 0.000113 0.00% Castro::do_new_sources() 10 7.255e-05 8.063e-05 9.292e-05 0.00% Castro::apply_source_to_state() 20 6.315e-05 7.353e-05 8.789e-05 0.00% Castro::subcycle_advance_ctu() 10 5.359e-05 6.594e-05 8.148e-05 0.00% Amr::FinalizeInit() 1 3.489e-06 1.455e-05 7.952e-05 0.00% Castro::advance() 10 5.141e-05 6.003e-05 7.762e-05 0.00% Castro::construct_old_gravity() 10 3.654e-05 4.743e-05 6.946e-05 0.00% Amr::defBaseLevel() 1 4.333e-05 5.467e-05 6.794e-05 0.00% Castro::expand_state() 10 2.918e-05 4.335e-05 5.516e-05 0.00% Castro::construct_new_gravity() 10 3.236e-05 4.116e-05 5.415e-05 0.00% Castro::check_for_nan() 20 2.792e-05 3.227e-05 3.594e-05 0.00% Castro::post_timestep() 10 1.619e-05 2.104e-05 2.85e-05 0.00% Castro::post_init() 1 1.411e-05 1.618e-05 1.907e-05 0.00% Castro::computeInitialDt() 2 2.979e-06 8.441e-06 1.638e-05 0.00% Amr::InitializeInit() 1 2.391e-06 4.065e-06 1.215e-05 0.00% Castro::computeNewDt() 9 9.028e-06 1.041e-05 1.174e-05 0.00% Amr::init() 1 2.141e-06 2.562e-06 3.078e-06 0.00% Amr::initialInit() 1 1.435e-06 1.85e-06 2.508e-06 0.00% Other 199 0.01359 0.01676 0.01862 0.46% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.004 4.006 4.006 100.00% Amr::coarseTimeStep() 10 3.797 3.797 3.797 94.78% Amr::timeStep() 10 3.785 3.786 3.786 94.51% Castro::advance() 10 3.769 3.77 3.77 94.10% Castro::subcycle_advance_ctu() 10 3.663 3.665 3.671 91.63% Castro::do_advance_ctu() 10 3.663 3.665 3.671 91.63% Castro::construct_ctu_hydro_source() 10 2.756 2.761 2.768 69.08% check_for_negative_density() 10 0.04104 0.2064 0.3985 9.95% Gravity::make_radial_gravity() 21 0.3215 0.3374 0.3556 8.88% AmrLevel::FillPatch() 41 0.2691 0.292 0.3107 7.75% FillPatchIterator::Initialize 41 0.2328 0.2431 0.2537 6.33% Castro::initialize_do_advance() 10 0.2204 0.2373 0.2495 6.23% Gravity::get_new_grav_vector() 11 0.2337 0.2343 0.2354 5.88% Castro::construct_old_gravity() 10 0.1929 0.2058 0.2202 5.50% Gravity::get_old_grav_vector() 10 0.1919 0.2049 0.2194 5.48% Castro::construct_new_gravity() 10 0.2036 0.2048 0.2057 5.14% Amr::init() 1 0.1877 0.1886 0.189 4.72% Castro::expand_state() 10 0.1484 0.1661 0.1809 4.52% FillPatchIterator::FillFromLevel0() 41 0.1603 0.167 0.1747 4.36% FillPatchSingleLevel 41 0.1601 0.1669 0.1745 4.36% Amr::initialInit() 1 0.1676 0.1685 0.169 4.22% FabArray::ParallelCopy() 41 0.1221 0.1268 0.1398 3.49% Castro::do_old_sources() 10 0.1356 0.1372 0.1389 3.47% Amr::InitializeInit() 1 0.0661 0.101 0.1343 3.35% Amr::defBaseLevel() 1 0.06609 0.101 0.1343 3.35% amrex::Copy() 193 0.09785 0.1155 0.1293 3.23% Castro::clean_state() 62 0.1205 0.1237 0.1255 3.13% Castro::initData() 1 0.04188 0.07603 0.1081 2.70% FabArray::setVal() 143 0.09835 0.1022 0.1063 2.65% Amr::FinalizeInit() 1 0.0333 0.06744 0.1029 2.57% Castro::initialize_advance() 10 0.0937 0.09982 0.1019 2.54% Castro::estTimeStep() 21 0.03219 0.06127 0.09302 2.32% Castro::do_new_sources() 10 0.07512 0.08012 0.0841 2.10% FabArray::ParallelCopy_finish() 41 0.0557 0.06318 0.07983 1.99% Castro::computeTemp() 63 0.06536 0.06931 0.07203 1.80% Castro::computeInitialDt() 2 0.002252 0.03625 0.07153 1.79% FabArray::ParallelCopy_nowait() 41 0.05957 0.06345 0.06896 1.72% Castro::reset_internal_energy(MultiFab) 63 0.04725 0.04984 0.05191 1.30% Castro::reset_internal_energy(Fab) 1008 0.04691 0.04949 0.05157 1.29% Castro::normalize_species() 62 0.04591 0.04766 0.0489 1.22% StateDataPhysBCFunct::() 41 0.03467 0.04002 0.04499 1.12% StateData::FillBoundary(geom) 41 0.03454 0.03988 0.04483 1.12% Castro::construct_new_source() 50 0.03752 0.04072 0.04476 1.12% Castro::construct_new_gravity_source() 10 0.03013 0.03242 0.0356 0.89% Amr::writePlotFile() 2 0.03262 0.03286 0.03324 0.83% Castro::post_init() 1 0.03034 0.03073 0.031 0.77% Gravity::interpolate_monopole_grav() 21 0.0264 0.02705 0.02774 0.69% Castro::finalize_do_advance() 10 0.01307 0.01799 0.02458 0.61% FabArray::setDomainBndry() 41 0.01855 0.02027 0.02163 0.54% Castro::apply_source_to_state() 20 0.01785 0.01939 0.02113 0.53% FabArray::Saxpy() 20 0.01778 0.01932 0.02105 0.53% Castro::Castro() 1 0.01552 0.01654 0.01788 0.45% VisMF::Write(FabArray) 2 0.01182 0.01324 0.01713 0.43% Castro::construct_old_source() 50 0.01559 0.01597 0.01621 0.40% Castro::construct_old_gravity_source() 10 0.01549 0.01587 0.01612 0.40% Castro::post_timestep() 10 0.01541 0.01587 0.01608 0.40% Castro::check_for_nan() 20 0.01192 0.01475 0.016 0.40% MultiFab::contains_nan() 20 0.01189 0.01471 0.01597 0.40% Castro::initMFs() 1 0.008945 0.009682 0.01165 0.29% Castro::computeNewDt() 9 0.008413 0.008423 0.008441 0.21% Castro::enforce_min_density() 62 0.006461 0.007394 0.00802 0.20% Other 199 0.02635 0.03158 0.03513 0.88% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 30 B 33 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8655 KiB 8663 KiB 8665 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6791 KiB 6794 KiB 6797 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7138 KiB 7139 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4568 KiB 4570 KiB 4578 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 254 KiB 278 KiB 299 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 21 KiB 25 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2821 KiB 2822 KiB 2823 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 204 KiB 214 KiB 226 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 46 KiB 49 KiB 54 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 74 KiB 75 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 61 KiB 65 KiB 70 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03) finalized