Initializing AMReX (25.03)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03) initialized Starting run at 06:20:30 UTC on 2025-03-06. Successfully read inputs file ... Castro git describe: 25.03-4-g0d20a39b0 AMReX git describe: 25.03 Microphysics git describe: 25.03 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014707292 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.369110993 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.346102251 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.356115247 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.353566264 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.365861992 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.323608417 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.321539128 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.333465463 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.308400429 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.328818308 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008901386 seconds Ending run at 06:20:33 UTC on 2025-03-06. Run time = 3.585717967 Run time without initialization = 3.420977015 Average number of zones advanced per microsecond: 0.766 Average number of zones advanced per microsecond per rank: 0.096 TinyProfiler total time across processes [min...avg...max]: 3.5823 ... 3.5841 ... 3.5859 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2270 2.2882 2.3361 65.15% Gravity::make_radial_gravity() 21 0.3074 0.3127 0.3292 9.18% check_for_negative_density() 10 0.1378 0.1841 0.245 6.83% Castro::estTimeStep() 21 0.04566 0.07559 0.1135 3.17% Castro::initData() 1 0.03713 0.07158 0.1011 2.82% FabArray::ParallelCopy_finish() 41 0.05834 0.07386 0.09967 2.78% amrex::Copy() 193 0.06264 0.082 0.08818 2.46% FabArray::setVal() 143 0.06346 0.06981 0.07854 2.19% Castro::reset_internal_energy(Fab) 1008 0.04546 0.04808 0.05141 1.43% Castro::normalize_species() 62 0.0468 0.04783 0.04913 1.37% FabArray::ParallelCopy_nowait() 41 0.03733 0.04331 0.04629 1.29% FillPatchIterator::Initialize 41 0.02947 0.03515 0.03809 1.06% Castro::construct_new_gravity_source() 10 0.02245 0.02602 0.03732 1.04% StateData::FillBoundary(geom) 41 0.03152 0.03413 0.03697 1.03% Gravity::interpolate_monopole_grav() 21 0.02687 0.02757 0.02844 0.79% Castro::initialize_do_advance() 10 0.01288 0.018 0.02165 0.60% Castro::computeTemp() 63 0.01833 0.01887 0.01934 0.54% FabArray::Saxpy() 20 0.01053 0.01259 0.0141 0.39% VisMF::Write(FabArray) 2 0.009147 0.009912 0.01282 0.36% MultiFab::contains_nan() 20 0.01067 0.01153 0.0128 0.36% Amr::writePlotFile() 2 0.007917 0.011 0.01243 0.35% Castro::initialize_advance() 10 0.005325 0.009627 0.01206 0.34% FabArray::setDomainBndry() 41 0.009023 0.0109 0.012 0.33% Castro::construct_old_gravity_source() 10 0.005884 0.008881 0.01003 0.28% Amr::coarseTimeStep() 10 0.001921 0.00624 0.008683 0.24% Castro::initMFs() 1 0.0065 0.006957 0.008022 0.22% Castro::construct_new_source() 50 0.005783 0.006352 0.00753 0.21% Castro::enforce_min_density() 62 0.005916 0.006274 0.006928 0.19% main() 1 0.002931 0.004342 0.005064 0.14% Gravity::get_new_grav_vector() 11 0.0027 0.003583 0.00408 0.11% Gravity::get_old_grav_vector() 10 0.001587 0.002197 0.002651 0.07% Castro::finalize_do_advance() 10 0.0005289 0.001069 0.001333 0.04% AmrLevel::FillPatch() 41 0.0008099 0.001117 0.001278 0.04% Amr::timeStep() 10 0.0001687 0.0002195 0.0003936 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002907 0.0003131 0.0003446 0.01% Castro::do_advance_ctu() 10 0.000165 0.000191 0.0002362 0.01% Castro::clean_state() 62 0.0001399 0.0001637 0.0002115 0.01% StateDataPhysBCFunct::() 41 0.0001097 0.0001243 0.0001587 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001099 0.0001239 0.0001563 0.00% Castro::do_old_sources() 10 8.261e-05 9.944e-05 0.0001132 0.00% FabArray::ParallelCopy() 41 9.486e-05 0.0001058 0.0001116 0.00% Castro::construct_old_source() 50 5.055e-05 7.156e-05 8.913e-05 0.00% FillPatchSingleLevel 41 7.098e-05 7.68e-05 8.767e-05 0.00% Castro::do_new_sources() 10 5.685e-05 7.214e-05 8.599e-05 0.00% Castro::Castro() 1 5.067e-05 6.772e-05 8.452e-05 0.00% Amr::FinalizeInit() 1 3.84e-06 1.472e-05 8.286e-05 0.00% Castro::subcycle_advance_ctu() 10 5.162e-05 6e-05 7.887e-05 0.00% Castro::apply_source_to_state() 20 4.514e-05 5.759e-05 7.548e-05 0.00% Castro::advance() 10 4.828e-05 5.38e-05 6.132e-05 0.00% Castro::construct_old_gravity() 10 4.44e-05 4.915e-05 5.644e-05 0.00% Castro::construct_new_gravity() 10 3.271e-05 3.776e-05 4.979e-05 0.00% Amr::defBaseLevel() 1 3.951e-05 4.428e-05 4.854e-05 0.00% Castro::post_timestep() 10 1.701e-05 2.46e-05 3.883e-05 0.00% Castro::expand_state() 10 2.305e-05 2.819e-05 3.571e-05 0.00% Castro::check_for_nan() 20 2.74e-05 2.997e-05 3.403e-05 0.00% Castro::post_init() 1 1.442e-05 1.771e-05 2.48e-05 0.00% Castro::computeNewDt() 9 9.841e-06 1.203e-05 1.443e-05 0.00% Castro::computeInitialDt() 2 3.097e-06 3.912e-06 6.726e-06 0.00% Amr::InitializeInit() 1 2.45e-06 3.171e-06 5.527e-06 0.00% Amr::init() 1 1.871e-06 2.439e-06 3.364e-06 0.00% Amr::initialInit() 1 1.653e-06 2.028e-06 2.434e-06 0.00% Other 199 0.01017 0.01276 0.01486 0.41% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.582 3.584 3.586 100.00% Amr::coarseTimeStep() 10 3.407 3.407 3.407 95.02% Amr::timeStep() 10 3.388 3.391 3.395 94.68% Castro::advance() 10 3.372 3.373 3.375 94.12% Castro::subcycle_advance_ctu() 10 3.293 3.298 3.304 92.13% Castro::do_advance_ctu() 10 3.293 3.298 3.304 92.13% Castro::construct_ctu_hydro_source() 10 2.49 2.494 2.497 69.63% Gravity::make_radial_gravity() 21 0.3258 0.3302 0.3419 9.53% check_for_negative_density() 10 0.1378 0.1841 0.245 6.83% AmrLevel::FillPatch() 41 0.2199 0.2316 0.2438 6.80% Gravity::get_new_grav_vector() 11 0.2186 0.22 0.2236 6.23% Castro::construct_old_gravity() 10 0.195 0.199 0.2077 5.79% FillPatchIterator::Initialize 41 0.1857 0.1979 0.2075 5.79% Gravity::get_old_grav_vector() 10 0.1943 0.198 0.2067 5.76% Castro::construct_new_gravity() 10 0.1961 0.1974 0.2006 5.60% Castro::initialize_do_advance() 10 0.1803 0.1879 0.196 5.46% FillPatchIterator::FillFromLevel0() 41 0.1368 0.1518 0.169 4.71% FillPatchSingleLevel 41 0.1367 0.1517 0.1689 4.71% Amr::init() 1 0.1628 0.1635 0.1644 4.59% Amr::initialInit() 1 0.148 0.1486 0.1495 4.17% Castro::expand_state() 10 0.1226 0.132 0.1404 3.92% FabArray::ParallelCopy() 41 0.09996 0.1174 0.1372 3.83% Castro::clean_state() 62 0.1174 0.1207 0.1233 3.44% Amr::InitializeInit() 1 0.05861 0.09273 0.1224 3.41% Amr::defBaseLevel() 1 0.05861 0.09273 0.1224 3.41% Castro::estTimeStep() 21 0.04566 0.07559 0.1135 3.17% Castro::initData() 1 0.04058 0.07534 0.105 2.93% Castro::do_old_sources() 10 0.09852 0.1028 0.1049 2.93% FabArray::ParallelCopy_finish() 41 0.05834 0.07386 0.09967 2.78% Amr::FinalizeInit() 1 0.0263 0.05584 0.09002 2.51% amrex::Copy() 193 0.06264 0.082 0.08818 2.46% Castro::do_new_sources() 10 0.05778 0.06629 0.07992 2.23% FabArray::setVal() 143 0.06346 0.06981 0.07854 2.19% Castro::initialize_advance() 10 0.0656 0.07089 0.07624 2.13% Castro::computeTemp() 63 0.06408 0.06727 0.07061 1.97% Castro::computeInitialDt() 2 0.002207 0.03182 0.06596 1.84% Castro::reset_internal_energy(MultiFab) 63 0.04575 0.04839 0.05176 1.44% Castro::reset_internal_energy(Fab) 1008 0.04546 0.04808 0.05141 1.43% Castro::normalize_species() 62 0.0468 0.04783 0.04913 1.37% FabArray::ParallelCopy_nowait() 41 0.03742 0.04341 0.04638 1.29% Castro::construct_new_source() 50 0.02824 0.03238 0.04485 1.25% Castro::finalize_do_advance() 10 0.01953 0.03588 0.04399 1.23% Castro::construct_new_gravity_source() 10 0.02245 0.02602 0.03732 1.04% StateDataPhysBCFunct::() 41 0.03163 0.03425 0.0371 1.03% StateData::FillBoundary(geom) 41 0.03152 0.03413 0.03697 1.03% Gravity::interpolate_monopole_grav() 21 0.02687 0.02757 0.02844 0.79% Amr::writePlotFile() 2 0.0238 0.02387 0.02405 0.67% Castro::post_init() 1 0.02333 0.02352 0.02361 0.66% Castro::post_timestep() 10 0.01605 0.0174 0.02012 0.56% Castro::apply_source_to_state() 20 0.01057 0.01264 0.01415 0.39% FabArray::Saxpy() 20 0.01053 0.01259 0.0141 0.39% Castro::check_for_nan() 20 0.0107 0.01156 0.01283 0.36% VisMF::Write(FabArray) 2 0.009147 0.009912 0.01282 0.36% MultiFab::contains_nan() 20 0.01067 0.01153 0.0128 0.36% FabArray::setDomainBndry() 41 0.009023 0.0109 0.012 0.33% Castro::Castro() 1 0.01003 0.01077 0.01176 0.33% Castro::construct_old_source() 50 0.005935 0.008952 0.01012 0.28% Castro::construct_old_gravity_source() 10 0.005884 0.008881 0.01003 0.28% Castro::computeNewDt() 9 0.008939 0.008967 0.008989 0.25% Castro::initMFs() 1 0.0065 0.006957 0.008022 0.22% Castro::enforce_min_density() 62 0.005916 0.006274 0.006928 0.19% Other 199 0.02006 0.02483 0.02973 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 32 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8662 KiB 8671 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6802 KiB 6810 KiB 6813 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4591 KiB 4597 KiB 4601 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 230 KiB 245 KiB 257 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2818 KiB 2822 KiB 2824 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 231 KiB 234 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 42 KiB 51 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 78 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 70 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03) finalized