Initializing AMReX (25.03)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03) initialized Starting run at 06:19:23 UTC on 2025-03-07. Successfully read inputs file ... Castro git describe: 25.03-4-g0d20a39b0 AMReX git describe: 25.03 Microphysics git describe: 25.03 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014838045 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.369301999 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.353784312 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.326231206 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.373609041 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.364701834 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.313648699 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.310160439 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.313046489 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.31036512 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.314256661 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007820007 seconds Ending run at 06:19:27 UTC on 2025-03-07. Run time = 3.55157142 Run time without initialization = 3.361904715 Average number of zones advanced per microsecond: 0.780 Average number of zones advanced per microsecond per rank: 0.097 TinyProfiler total time across processes [min...avg...max]: 3.5505 ... 3.5508 ... 3.5516 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2324 2.3007 2.3621 66.51% Gravity::make_radial_gravity() 21 0.3032 0.3113 0.333 9.38% check_for_negative_density() 10 0.05811 0.1176 0.1872 5.27% Castro::initData() 1 0.03768 0.07469 0.1221 3.44% Castro::estTimeStep() 21 0.02828 0.08553 0.122 3.43% amrex::Copy() 193 0.07859 0.08574 0.08941 2.52% FabArray::ParallelCopy_finish() 41 0.06121 0.06723 0.08206 2.31% FabArray::setVal() 143 0.06808 0.07275 0.07928 2.23% Castro::normalize_species() 62 0.04583 0.04908 0.05205 1.47% Castro::reset_internal_energy(Fab) 1008 0.04376 0.04791 0.05035 1.42% FabArray::ParallelCopy_nowait() 41 0.04159 0.0448 0.04704 1.32% FillPatchIterator::Initialize 41 0.02992 0.0359 0.03912 1.10% StateData::FillBoundary(geom) 41 0.03182 0.03394 0.03621 1.02% Gravity::interpolate_monopole_grav() 21 0.0264 0.02761 0.02872 0.81% Castro::construct_new_gravity_source() 10 0.02353 0.02573 0.0282 0.79% Castro::initialize_do_advance() 10 0.0138 0.01795 0.01967 0.55% Castro::computeTemp() 63 0.01772 0.01874 0.0195 0.55% MultiFab::contains_nan() 20 0.0106 0.01169 0.01499 0.42% FabArray::Saxpy() 20 0.01251 0.01374 0.01463 0.41% FabArray::setDomainBndry() 41 0.008217 0.01119 0.01391 0.39% Castro::initialize_advance() 10 0.01004 0.01128 0.01287 0.36% VisMF::Write(FabArray) 2 0.00919 0.009732 0.01274 0.36% Castro::construct_old_gravity_source() 10 0.008777 0.01016 0.01111 0.31% Amr::writePlotFile() 2 0.007294 0.01013 0.01094 0.31% Amr::coarseTimeStep() 10 0.002685 0.008171 0.01075 0.30% Castro::initMFs() 1 0.006433 0.007116 0.007619 0.21% Castro::construct_new_source() 50 0.006139 0.006547 0.006828 0.19% Castro::enforce_min_density() 62 0.005888 0.006278 0.006796 0.19% Gravity::get_new_grav_vector() 11 0.003204 0.003786 0.004687 0.13% main() 1 0.003515 0.004152 0.004433 0.12% Gravity::get_old_grav_vector() 10 0.001796 0.002231 0.002739 0.08% Castro::finalize_do_advance() 10 0.001228 0.001271 0.001396 0.04% AmrLevel::FillPatch() 41 0.0007792 0.0009353 0.001039 0.03% Amr::timeStep() 10 0.0001319 0.0002134 0.0004969 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002886 0.0003056 0.0003369 0.01% Castro::do_advance_ctu() 10 0.0001583 0.0001869 0.0002333 0.01% StateDataPhysBCFunct::() 41 0.0001083 0.000132 0.0002052 0.01% Castro::clean_state() 62 0.000144 0.0001682 0.0001985 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001091 0.0001244 0.0001426 0.00% FabArray::ParallelCopy() 41 9.699e-05 0.0001118 0.0001345 0.00% Castro::do_old_sources() 10 9.535e-05 0.0001104 0.0001183 0.00% Amr::FinalizeInit() 1 3.847e-06 1.744e-05 0.0001047 0.00% FillPatchSingleLevel 41 6.647e-05 7.789e-05 9.704e-05 0.00% Castro::construct_old_source() 50 6.566e-05 8.162e-05 9.013e-05 0.00% Castro::do_new_sources() 10 6.632e-05 7.596e-05 8.219e-05 0.00% Castro::subcycle_advance_ctu() 10 4.682e-05 5.472e-05 7.259e-05 0.00% Castro::apply_source_to_state() 20 4.984e-05 5.812e-05 7.006e-05 0.00% Castro::advance() 10 4.419e-05 5.534e-05 6.823e-05 0.00% Castro::Castro() 1 4.787e-05 5.762e-05 6.505e-05 0.00% Castro::construct_old_gravity() 10 3.824e-05 4.728e-05 5.737e-05 0.00% Amr::defBaseLevel() 1 3.81e-05 4.455e-05 5.221e-05 0.00% Castro::construct_new_gravity() 10 2.918e-05 3.723e-05 4.911e-05 0.00% Castro::expand_state() 10 2.16e-05 3.098e-05 4.792e-05 0.00% Castro::check_for_nan() 20 2.706e-05 3.008e-05 3.69e-05 0.00% Castro::post_timestep() 10 1.631e-05 1.982e-05 2.653e-05 0.00% Castro::post_init() 1 1.456e-05 1.694e-05 2.392e-05 0.00% Castro::computeNewDt() 9 9.444e-06 1.169e-05 1.335e-05 0.00% Amr::InitializeInit() 1 2.388e-06 4.359e-06 1.201e-05 0.00% Castro::computeInitialDt() 2 3.171e-06 3.985e-06 5.431e-06 0.00% Amr::init() 1 1.941e-06 2.257e-06 2.755e-06 0.00% Amr::initialInit() 1 1.717e-06 2.183e-06 2.479e-06 0.00% Other 199 0.01053 0.01315 0.01531 0.43% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.55 3.551 3.552 100.00% Amr::coarseTimeStep() 10 3.35 3.35 3.35 94.32% Amr::timeStep() 10 3.329 3.331 3.337 93.95% Castro::advance() 10 3.313 3.314 3.317 93.40% Castro::subcycle_advance_ctu() 10 3.229 3.235 3.24 91.23% Castro::do_advance_ctu() 10 3.229 3.235 3.24 91.23% Castro::construct_ctu_hydro_source() 10 2.438 2.44 2.443 68.78% Gravity::make_radial_gravity() 21 0.3211 0.3287 0.3471 9.77% AmrLevel::FillPatch() 41 0.2146 0.2294 0.2413 6.79% Gravity::get_new_grav_vector() 11 0.2199 0.2216 0.224 6.31% Castro::construct_old_gravity() 10 0.1918 0.1992 0.2145 6.04% Gravity::get_old_grav_vector() 10 0.1909 0.1983 0.2133 6.01% FillPatchIterator::Initialize 41 0.1856 0.1936 0.2023 5.70% Castro::construct_new_gravity() 10 0.1952 0.1969 0.1987 5.59% Castro::initialize_do_advance() 10 0.168 0.1826 0.1929 5.43% Amr::init() 1 0.1882 0.1888 0.1895 5.34% check_for_negative_density() 10 0.05811 0.1176 0.1872 5.27% Amr::initialInit() 1 0.1732 0.1738 0.1745 4.91% FillPatchIterator::FillFromLevel0() 41 0.1378 0.1465 0.1601 4.51% FillPatchSingleLevel 41 0.1377 0.1464 0.1599 4.50% Amr::InitializeInit() 1 0.0594 0.09623 0.1447 4.07% Amr::defBaseLevel() 1 0.0594 0.09623 0.1447 4.07% Castro::expand_state() 10 0.1146 0.1273 0.1382 3.89% Castro::clean_state() 62 0.115 0.1216 0.1272 3.58% Castro::initData() 1 0.0411 0.07869 0.1268 3.57% FabArray::ParallelCopy() 41 0.1049 0.1122 0.1248 3.52% Castro::estTimeStep() 21 0.02828 0.08553 0.122 3.43% Amr::FinalizeInit() 1 0.02877 0.07754 0.1142 3.21% Castro::do_old_sources() 10 0.09996 0.1043 0.1065 3.00% amrex::Copy() 193 0.07859 0.08574 0.08941 2.52% Castro::computeInitialDt() 2 0.002436 0.05116 0.08776 2.47% FabArray::ParallelCopy_finish() 41 0.06121 0.06723 0.08206 2.31% Castro::initialize_advance() 10 0.06894 0.07507 0.07976 2.25% FabArray::setVal() 143 0.06808 0.07275 0.07928 2.23% Castro::do_new_sources() 10 0.06418 0.06859 0.07613 2.14% Castro::computeTemp() 63 0.06179 0.06696 0.07017 1.98% Castro::normalize_species() 62 0.04583 0.04908 0.05205 1.47% Castro::reset_internal_energy(MultiFab) 63 0.04407 0.04822 0.05067 1.43% Castro::reset_internal_energy(Fab) 1008 0.04376 0.04791 0.05035 1.42% FabArray::ParallelCopy_nowait() 41 0.04171 0.0449 0.04713 1.33% StateDataPhysBCFunct::() 41 0.03195 0.03407 0.03633 1.02% StateData::FillBoundary(geom) 41 0.03182 0.03394 0.03621 1.02% Castro::construct_new_source() 50 0.02969 0.03228 0.03434 0.97% Castro::finalize_do_advance() 10 0.01794 0.02647 0.03339 0.94% Gravity::interpolate_monopole_grav() 21 0.0264 0.02761 0.02872 0.81% Castro::construct_new_gravity_source() 10 0.02353 0.02573 0.0282 0.79% Castro::post_init() 1 0.02523 0.02564 0.02601 0.73% Amr::writePlotFile() 2 0.02292 0.02297 0.02301 0.65% Castro::post_timestep() 10 0.01591 0.01718 0.01883 0.53% Castro::check_for_nan() 20 0.01063 0.01172 0.01503 0.42% MultiFab::contains_nan() 20 0.0106 0.01169 0.01499 0.42% Castro::apply_source_to_state() 20 0.01256 0.0138 0.0147 0.41% FabArray::Saxpy() 20 0.01251 0.01374 0.01463 0.41% FabArray::setDomainBndry() 41 0.008217 0.01119 0.01391 0.39% VisMF::Write(FabArray) 2 0.00919 0.009732 0.01274 0.36% Castro::Castro() 1 0.009768 0.01092 0.0117 0.33% Castro::construct_old_source() 50 0.008867 0.01024 0.0112 0.32% Castro::construct_old_gravity_source() 10 0.008777 0.01016 0.01111 0.31% Castro::computeNewDt() 9 0.009171 0.009184 0.009197 0.26% Castro::initMFs() 1 0.006433 0.007116 0.007619 0.21% Castro::enforce_min_density() 62 0.005888 0.006278 0.006796 0.19% Other 199 0.02076 0.02541 0.03064 0.86% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 33 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8662 KiB 8671 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6750 KiB 6755 KiB 6758 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4544 KiB 4551 KiB 4558 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 223 KiB 242 KiB 256 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2797 KiB 2799 KiB 2800 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 230 KiB 236 KiB 249 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 44 KiB 48 KiB 56 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03) finalized