Initializing AMReX (25.03)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03) initialized Starting run at 05:19:37 UTC on 2025-03-10. Successfully read inputs file ... Castro git describe: 25.03-4-g0d20a39b0 AMReX git describe: 25.03 Microphysics git describe: 25.03 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014277697 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.341630713 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.330330986 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.316515956 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.31791519 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.35457069 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.329597983 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.30626131 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.304706955 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.30605208 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.3028287 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007955232 seconds Ending run at 05:19:41 UTC on 2025-03-10. Run time = 3.388252365 Run time without initialization = 3.223749939 Average number of zones advanced per microsecond: 0.813 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3865 ... 3.3872 ... 3.3883 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1724 2.2328 2.3027 67.96% Gravity::make_radial_gravity() 21 0.2892 0.3059 0.3284 9.69% check_for_negative_density() 10 0.02971 0.1053 0.1698 5.01% FabArray::ParallelCopy_finish() 41 0.03568 0.05648 0.1065 3.14% Castro::initData() 1 0.0384 0.07052 0.101 2.98% Castro::estTimeStep() 21 0.02451 0.06145 0.09495 2.80% amrex::Copy() 193 0.05628 0.07887 0.08952 2.64% FabArray::setVal() 143 0.05091 0.06477 0.07541 2.23% Castro::normalize_species() 62 0.04525 0.04862 0.05094 1.50% Castro::reset_internal_energy(Fab) 1008 0.04443 0.04633 0.04908 1.45% FabArray::ParallelCopy_nowait() 41 0.03267 0.04134 0.04481 1.32% StateData::FillBoundary(geom) 41 0.031 0.03285 0.03901 1.15% FillPatchIterator::Initialize 41 0.02614 0.03322 0.03646 1.08% Gravity::interpolate_monopole_grav() 21 0.0266 0.02706 0.02847 0.84% Castro::construct_new_gravity_source() 10 0.02298 0.02442 0.02645 0.78% Castro::computeTemp() 63 0.01776 0.01849 0.01947 0.57% Castro::initialize_do_advance() 10 0.01088 0.01656 0.019 0.56% Castro::initialize_advance() 10 0.00534 0.01042 0.01423 0.42% FabArray::Saxpy() 20 0.009316 0.01205 0.01363 0.40% Amr::writePlotFile() 2 0.007419 0.01046 0.01264 0.37% MultiFab::contains_nan() 20 0.01047 0.01127 0.01217 0.36% FabArray::setDomainBndry() 41 0.007999 0.01054 0.01215 0.36% VisMF::Write(FabArray) 2 0.008777 0.009552 0.01211 0.36% Castro::construct_old_gravity_source() 10 0.006131 0.009096 0.01011 0.30% Castro::initMFs() 1 0.006557 0.007193 0.007568 0.22% Castro::construct_new_source() 50 0.005432 0.006228 0.006514 0.19% Castro::enforce_min_density() 62 0.005453 0.006045 0.006375 0.19% main() 1 0.003668 0.004181 0.004627 0.14% Amr::coarseTimeStep() 10 0.001803 0.002766 0.004312 0.13% Gravity::get_new_grav_vector() 11 0.002591 0.00346 0.004222 0.12% Gravity::get_old_grav_vector() 10 0.001499 0.002133 0.002792 0.08% Castro::finalize_do_advance() 10 0.0006186 0.001051 0.001206 0.04% AmrLevel::FillPatch() 41 0.0007748 0.0009591 0.001051 0.03% Amr::timeStep() 10 0.0001349 0.0002128 0.0004901 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002753 0.0002868 0.0003065 0.01% Castro::do_advance_ctu() 10 0.0001655 0.0001812 0.0001943 0.01% Castro::clean_state() 62 0.0001375 0.0001535 0.0001671 0.00% FillPatchIterator::FillFromLevel0() 41 9.671e-05 0.0001166 0.0001432 0.00% StateDataPhysBCFunct::() 41 9.446e-05 0.000111 0.000136 0.00% FabArray::ParallelCopy() 41 9.083e-05 9.977e-05 0.0001113 0.00% Castro::do_old_sources() 10 8.936e-05 9.694e-05 0.000105 0.00% Amr::FinalizeInit() 1 4.182e-06 1.466e-05 8.516e-05 0.00% Castro::construct_old_source() 50 4.988e-05 6.697e-05 7.68e-05 0.00% FillPatchSingleLevel 41 6.431e-05 7.074e-05 7.491e-05 0.00% Castro::Castro() 1 5.235e-05 5.989e-05 7.369e-05 0.00% Castro::do_new_sources() 10 5.809e-05 6.459e-05 7.35e-05 0.00% Castro::subcycle_advance_ctu() 10 4.344e-05 5.279e-05 6.765e-05 0.00% Castro::apply_source_to_state() 20 4.051e-05 4.992e-05 6.039e-05 0.00% Castro::advance() 10 4.375e-05 5.013e-05 5.868e-05 0.00% Castro::construct_old_gravity() 10 3.759e-05 4.376e-05 5.146e-05 0.00% Amr::defBaseLevel() 1 4.347e-05 4.528e-05 4.776e-05 0.00% Castro::construct_new_gravity() 10 2.813e-05 3.56e-05 4.446e-05 0.00% Castro::expand_state() 10 2.011e-05 2.63e-05 3.223e-05 0.00% Castro::check_for_nan() 20 2.564e-05 2.772e-05 3.135e-05 0.00% Castro::post_init() 1 1.319e-05 1.522e-05 2.129e-05 0.00% Castro::post_timestep() 10 1.664e-05 1.832e-05 1.938e-05 0.00% Castro::computeNewDt() 9 9.337e-06 1.047e-05 1.298e-05 0.00% Amr::InitializeInit() 1 2.654e-06 3.415e-06 6.83e-06 0.00% Castro::computeInitialDt() 2 3.392e-06 3.805e-06 4.365e-06 0.00% Amr::init() 1 1.678e-06 2.215e-06 2.868e-06 0.00% Amr::initialInit() 1 1.607e-06 1.966e-06 2.518e-06 0.00% Other 199 0.01019 0.01289 0.01483 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.386 3.387 3.388 100.00% Amr::coarseTimeStep() 10 3.211 3.211 3.211 94.77% Amr::timeStep() 10 3.197 3.198 3.199 94.43% Castro::advance() 10 3.181 3.182 3.182 93.91% Castro::subcycle_advance_ctu() 10 3.101 3.111 3.128 92.31% Castro::do_advance_ctu() 10 3.101 3.111 3.128 92.31% Castro::construct_ctu_hydro_source() 10 2.354 2.36 2.363 69.75% Gravity::make_radial_gravity() 21 0.3056 0.3219 0.3393 10.01% AmrLevel::FillPatch() 41 0.1972 0.2071 0.2266 6.69% Gravity::get_new_grav_vector() 11 0.2113 0.2126 0.2138 6.31% Castro::construct_old_gravity() 10 0.1802 0.1928 0.2068 6.10% Gravity::get_old_grav_vector() 10 0.1794 0.1921 0.2062 6.09% FillPatchIterator::Initialize 41 0.166 0.1749 0.205 6.05% Castro::construct_new_gravity() 10 0.1888 0.1901 0.191 5.64% Castro::initialize_do_advance() 10 0.1638 0.1691 0.1742 5.14% FillPatchIterator::FillFromLevel0() 41 0.1191 0.1312 0.1706 5.04% FillPatchSingleLevel 41 0.119 0.1311 0.1705 5.03% check_for_negative_density() 10 0.02971 0.1053 0.1698 5.01% Amr::init() 1 0.1628 0.1635 0.1642 4.85% Amr::initialInit() 1 0.1484 0.1489 0.1497 4.42% FabArray::ParallelCopy() 41 0.0798 0.09802 0.1393 4.11% Castro::expand_state() 10 0.1101 0.1153 0.1258 3.71% Castro::clean_state() 62 0.1125 0.1191 0.1247 3.68% Amr::InitializeInit() 1 0.06049 0.09205 0.1224 3.61% Amr::defBaseLevel() 1 0.06049 0.09205 0.1224 3.61% FabArray::ParallelCopy_finish() 41 0.03568 0.05648 0.1065 3.14% Castro::initData() 1 0.04204 0.07423 0.1048 3.09% Castro::do_old_sources() 10 0.0943 0.09718 0.101 2.98% Castro::estTimeStep() 21 0.02451 0.06145 0.09495 2.80% amrex::Copy() 193 0.05628 0.07887 0.08952 2.64% Amr::FinalizeInit() 1 0.0263 0.05681 0.08823 2.60% Castro::initialize_advance() 10 0.05019 0.06743 0.07759 2.29% FabArray::setVal() 143 0.05091 0.06477 0.07541 2.23% Castro::do_new_sources() 10 0.05947 0.06472 0.07182 2.12% Castro::computeTemp() 63 0.0625 0.06511 0.06886 2.03% Castro::computeInitialDt() 2 0.002147 0.03267 0.06399 1.89% Castro::normalize_species() 62 0.04525 0.04862 0.05094 1.50% Castro::reset_internal_energy(MultiFab) 63 0.04473 0.04662 0.04939 1.46% Castro::reset_internal_energy(Fab) 1008 0.04443 0.04633 0.04908 1.45% FabArray::ParallelCopy_nowait() 41 0.03278 0.04144 0.04491 1.33% StateDataPhysBCFunct::() 41 0.0311 0.03297 0.03915 1.16% StateData::FillBoundary(geom) 41 0.031 0.03285 0.03901 1.15% Castro::construct_new_source() 50 0.02841 0.03064 0.03286 0.97% Gravity::interpolate_monopole_grav() 21 0.0266 0.02706 0.02847 0.84% Castro::construct_new_gravity_source() 10 0.02298 0.02442 0.02645 0.78% Castro::finalize_do_advance() 10 0.0126 0.02093 0.02583 0.76% Castro::post_init() 1 0.02343 0.02359 0.02369 0.70% Amr::writePlotFile() 2 0.02251 0.02266 0.02308 0.68% Castro::post_timestep() 10 0.01583 0.01661 0.01734 0.51% Castro::apply_source_to_state() 20 0.009359 0.0121 0.01369 0.40% FabArray::Saxpy() 20 0.009316 0.01205 0.01363 0.40% Castro::check_for_nan() 20 0.0105 0.0113 0.0122 0.36% MultiFab::contains_nan() 20 0.01047 0.01127 0.01217 0.36% FabArray::setDomainBndry() 41 0.007999 0.01054 0.01215 0.36% VisMF::Write(FabArray) 2 0.008777 0.009552 0.01211 0.36% Castro::Castro() 1 0.009508 0.01107 0.01183 0.35% Castro::construct_old_source() 50 0.006181 0.009163 0.01019 0.30% Castro::construct_old_gravity_source() 10 0.006131 0.009096 0.01011 0.30% Castro::computeNewDt() 9 0.008902 0.008921 0.008941 0.26% Castro::initMFs() 1 0.006557 0.007193 0.007568 0.22% Castro::enforce_min_density() 62 0.005453 0.006045 0.006375 0.19% Other 199 0.02007 0.02454 0.02803 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 35 B 44 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8654 KiB 8668 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6781 KiB 6790 KiB 6793 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7129 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4572 KiB 4587 KiB 4613 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 220 KiB 230 KiB 253 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2812 KiB 2817 KiB 2818 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 229 KiB 242 KiB 255 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 44 KiB 64 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 80 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 72 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03) finalized