Initializing AMReX (25.03-4-g0f2998b1daeb)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-4-g0f2998b1daeb) initialized Starting run at 05:31:40 UTC on 2025-03-11. Successfully read inputs file ... Castro git describe: 25.03-4-g0d20a39b0 AMReX git describe: 25.03-4-g0f2998b1d Microphysics git describe: 25.03-1-gf4280cab reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015975969 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.363984815 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.325844209 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.323932976 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.321433162 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.359293391 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.314682761 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.308417271 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.310324854 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.310189539 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.309111769 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007822675 seconds Ending run at 05:31:43 UTC on 2025-03-11. Run time = 3.44566831 Run time without initialization = 3.260942485 Average number of zones advanced per microsecond: 0.804 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.4439 ... 3.4449 ... 3.4457 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2507 2.2817 2.3117 67.09% Gravity::make_radial_gravity() 21 0.3034 0.311 0.3223 9.35% Castro::initData() 1 0.04251 0.07696 0.1159 3.36% check_for_negative_density() 10 0.03737 0.06809 0.09884 2.87% Castro::estTimeStep() 21 0.02553 0.06522 0.09842 2.86% amrex::Copy() 193 0.08598 0.08872 0.09232 2.68% FabArray::setVal() 143 0.07098 0.07238 0.07333 2.13% FabArray::ParallelCopy_finish() 41 0.04971 0.05757 0.0659 1.91% Castro::normalize_species() 62 0.04525 0.04655 0.04807 1.40% Castro::reset_internal_energy(Fab) 1008 0.04378 0.04577 0.04779 1.39% FabArray::ParallelCopy_nowait() 41 0.04123 0.04387 0.0455 1.32% StateData::FillBoundary(geom) 41 0.03106 0.03476 0.04223 1.23% FillPatchIterator::Initialize 41 0.03099 0.03454 0.03767 1.09% Gravity::interpolate_monopole_grav() 21 0.02719 0.02762 0.02819 0.82% Castro::construct_new_gravity_source() 10 0.02403 0.0245 0.02521 0.73% Castro::computeTemp() 63 0.01746 0.01889 0.02386 0.69% Castro::initialize_do_advance() 10 0.01427 0.01668 0.01776 0.52% FabArray::Saxpy() 20 0.01239 0.01402 0.0156 0.45% MultiFab::contains_nan() 20 0.01095 0.01218 0.01505 0.44% Castro::initialize_advance() 10 0.01097 0.01196 0.01395 0.40% FabArray::setDomainBndry() 41 0.008672 0.01123 0.01388 0.40% VisMF::Write(FabArray) 2 0.009324 0.009954 0.01323 0.38% Amr::writePlotFile() 2 0.00795 0.01094 0.01161 0.34% Castro::construct_old_gravity_source() 10 0.008501 0.009905 0.01106 0.32% Castro::initMFs() 1 0.00674 0.007346 0.007685 0.22% Castro::construct_new_source() 50 0.00658 0.006677 0.006796 0.20% Castro::enforce_min_density() 62 0.005843 0.006123 0.006406 0.19% main() 1 0.003429 0.00435 0.0048 0.14% Gravity::get_new_grav_vector() 11 0.003234 0.003653 0.004123 0.12% Gravity::get_old_grav_vector() 10 0.001807 0.002207 0.002853 0.08% Amr::coarseTimeStep() 10 0.001317 0.001792 0.002498 0.07% Castro::finalize_do_advance() 10 0.0013 0.001339 0.001371 0.04% AmrLevel::FillPatch() 41 0.0009153 0.001099 0.001356 0.04% Amr::timeStep() 10 0.0001487 0.0002043 0.0004222 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002867 0.0003047 0.0003244 0.01% Castro::do_advance_ctu() 10 0.0001603 0.0001818 0.0002116 0.01% Castro::clean_state() 62 0.0001445 0.0001681 0.0001977 0.01% StateDataPhysBCFunct::() 41 0.0001121 0.0001317 0.000178 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001046 0.0001261 0.000172 0.00% Castro::do_old_sources() 10 8.742e-05 0.0001081 0.0001225 0.00% FabArray::ParallelCopy() 41 9.691e-05 0.0001049 0.0001183 0.00% Castro::construct_old_source() 50 5.752e-05 7.724e-05 9.841e-05 0.00% FillPatchSingleLevel 41 6.88e-05 8.017e-05 9.341e-05 0.00% Castro::apply_source_to_state() 20 5.596e-05 6.583e-05 9.336e-05 0.00% Amr::FinalizeInit() 1 3.753e-06 1.51e-05 8.683e-05 0.00% Castro::Castro() 1 5.508e-05 6.681e-05 8.346e-05 0.00% Castro::do_new_sources() 10 5.632e-05 7.356e-05 8.241e-05 0.00% Castro::subcycle_advance_ctu() 10 5.297e-05 5.764e-05 6.365e-05 0.00% Castro::construct_old_gravity() 10 3.766e-05 5.056e-05 6.277e-05 0.00% Castro::advance() 10 5.206e-05 5.535e-05 5.864e-05 0.00% Amr::defBaseLevel() 1 4.3e-05 5.026e-05 5.714e-05 0.00% Castro::construct_new_gravity() 10 3.48e-05 3.913e-05 4.418e-05 0.00% Castro::check_for_nan() 20 2.761e-05 3.272e-05 4.077e-05 0.00% Castro::expand_state() 10 2.433e-05 2.991e-05 3.86e-05 0.00% Castro::post_init() 1 1.457e-05 1.749e-05 2.495e-05 0.00% Castro::post_timestep() 10 1.772e-05 1.903e-05 2.075e-05 0.00% Castro::computeNewDt() 9 9.46e-06 1.145e-05 1.3e-05 0.00% Amr::InitializeInit() 1 2.572e-06 3.161e-06 5.371e-06 0.00% Castro::computeInitialDt() 2 3.246e-06 3.737e-06 4.156e-06 0.00% Amr::init() 1 1.518e-06 2.064e-06 2.902e-06 0.00% Amr::initialInit() 1 1.448e-06 2.042e-06 2.346e-06 0.00% Other 199 0.01069 0.01318 0.01507 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.444 3.445 3.446 100.00% Amr::coarseTimeStep() 10 3.248 3.248 3.248 94.27% Amr::timeStep() 10 3.236 3.237 3.237 93.95% Castro::advance() 10 3.221 3.221 3.221 93.47% Castro::subcycle_advance_ctu() 10 3.141 3.143 3.148 91.36% Castro::do_advance_ctu() 10 3.141 3.143 3.148 91.36% Castro::construct_ctu_hydro_source() 10 2.368 2.371 2.375 68.91% Gravity::make_radial_gravity() 21 0.3201 0.3294 0.3389 9.84% AmrLevel::FillPatch() 41 0.2076 0.2189 0.2303 6.68% Gravity::get_new_grav_vector() 11 0.2111 0.2125 0.2135 6.20% Castro::construct_old_gravity() 10 0.1943 0.2042 0.2135 6.20% Gravity::get_old_grav_vector() 10 0.1932 0.2035 0.2128 6.18% FillPatchIterator::Initialize 41 0.175 0.1825 0.1921 5.57% Castro::construct_new_gravity() 10 0.1861 0.1865 0.187 5.43% Castro::initialize_do_advance() 10 0.1697 0.1761 0.1868 5.42% Amr::init() 1 0.1836 0.184 0.1847 5.36% Amr::initialInit() 1 0.1676 0.168 0.1686 4.89% FillPatchIterator::FillFromLevel0() 41 0.1292 0.1367 0.144 4.18% FillPatchSingleLevel 41 0.129 0.1366 0.1438 4.17% Amr::InitializeInit() 1 0.06439 0.09878 0.1382 4.01% Amr::defBaseLevel() 1 0.06439 0.09878 0.1382 4.01% Castro::expand_state() 10 0.1156 0.1207 0.13 3.77% Castro::clean_state() 62 0.1125 0.117 0.1223 3.55% Castro::initData() 1 0.04614 0.08081 0.1195 3.47% Castro::do_old_sources() 10 0.09724 0.105 0.111 3.22% FabArray::ParallelCopy() 41 0.0954 0.1016 0.1081 3.14% Amr::FinalizeInit() 1 0.02957 0.06926 0.1032 3.00% check_for_negative_density() 10 0.03737 0.06809 0.09884 2.87% Castro::estTimeStep() 21 0.02553 0.06522 0.09842 2.86% amrex::Copy() 193 0.08598 0.08872 0.09232 2.68% Castro::initialize_advance() 10 0.06924 0.07377 0.07631 2.21% Castro::computeInitialDt() 2 0.002245 0.04177 0.07593 2.20% FabArray::setVal() 143 0.07098 0.07238 0.07333 2.13% Castro::computeTemp() 63 0.06163 0.06497 0.07064 2.05% Castro::do_new_sources() 10 0.06471 0.06593 0.067 1.94% FabArray::ParallelCopy_finish() 41 0.04971 0.05757 0.0659 1.91% Castro::reset_internal_energy(MultiFab) 63 0.04407 0.04608 0.04809 1.40% Castro::normalize_species() 62 0.04525 0.04655 0.04807 1.40% Castro::reset_internal_energy(Fab) 1008 0.04378 0.04577 0.04779 1.39% FabArray::ParallelCopy_nowait() 41 0.04133 0.04397 0.04559 1.32% StateDataPhysBCFunct::() 41 0.03117 0.03489 0.04236 1.23% StateData::FillBoundary(geom) 41 0.03106 0.03476 0.04223 1.23% Castro::construct_new_source() 50 0.03071 0.03118 0.03194 0.93% Gravity::interpolate_monopole_grav() 21 0.02719 0.02762 0.02819 0.82% Castro::post_init() 1 0.02689 0.02707 0.02725 0.79% Castro::construct_new_gravity_source() 10 0.02403 0.0245 0.02521 0.73% Amr::writePlotFile() 2 0.02352 0.02388 0.02406 0.70% Castro::finalize_do_advance() 10 0.01534 0.01629 0.01767 0.51% Castro::post_timestep() 10 0.01533 0.0159 0.01618 0.47% Castro::apply_source_to_state() 20 0.01244 0.01409 0.01566 0.45% FabArray::Saxpy() 20 0.01239 0.01402 0.0156 0.45% Castro::check_for_nan() 20 0.01098 0.01221 0.01509 0.44% MultiFab::contains_nan() 20 0.01095 0.01218 0.01505 0.44% FabArray::setDomainBndry() 41 0.008672 0.01123 0.01388 0.40% VisMF::Write(FabArray) 2 0.009324 0.009954 0.01323 0.38% Castro::Castro() 1 0.00979 0.01141 0.01215 0.35% Castro::construct_old_source() 50 0.008583 0.009983 0.01116 0.32% Castro::construct_old_gravity_source() 10 0.008501 0.009905 0.01106 0.32% Castro::computeNewDt() 9 0.008498 0.008505 0.008517 0.25% Castro::initMFs() 1 0.00674 0.007346 0.007685 0.22% Castro::enforce_min_density() 62 0.005843 0.006123 0.006406 0.19% Other 199 0.0212 0.02481 0.02817 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 35 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8669 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6746 KiB 6752 KiB 6755 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4555 KiB 4558 KiB 4562 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 226 KiB 238 KiB 251 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2801 KiB 2804 KiB 2805 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 236 KiB 243 KiB 250 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 40 KiB 44 KiB 49 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 72 KiB 75 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-4-g0f2998b1daeb) finalized