Initializing AMReX (25.03-6-g5da47374715c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-6-g5da47374715c) initialized Starting run at 16:54:31 UTC on 2025-03-12. Successfully read inputs file ... Castro git describe: 25.03-7-gd9554d243 AMReX git describe: 25.03-6-g5da473747 Microphysics git describe: 25.03-1-gf4280cab reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014484765 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.347032116 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.338803252 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.313482291 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.314516567 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.359989663 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.306988124 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.2965935 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297181592 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.297917062 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.297598039 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008030894 seconds Ending run at 16:54:34 UTC on 2025-03-12. Run time = 3.348781772 Run time without initialization = 3.183137221 Average number of zones advanced per microsecond: 0.824 Average number of zones advanced per microsecond per rank: 0.103 TinyProfiler total time across processes [min...avg...max]: 3.3472 ... 3.3482 ... 3.3493 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1741 2.2240 2.2767 67.97% Gravity::make_radial_gravity() 21 0.2888 0.2982 0.3081 9.20% check_for_negative_density() 10 0.04266 0.1003 0.1533 4.58% Castro::initData() 1 0.03863 0.07097 0.1014 3.03% Castro::estTimeStep() 21 0.02179 0.05984 0.08907 2.66% FabArray::ParallelCopy_finish() 41 0.03842 0.04828 0.08725 2.60% amrex::Copy() 193 0.06398 0.07676 0.08516 2.54% FabArray::setVal() 143 0.05476 0.06543 0.0714 2.13% Castro::reset_internal_energy(Fab) 1008 0.0406 0.04559 0.04809 1.44% Castro::normalize_species() 62 0.04508 0.0459 0.04695 1.40% FabArray::ParallelCopy_nowait() 41 0.03615 0.04053 0.04197 1.25% StateData::FillBoundary(geom) 41 0.02974 0.03196 0.03557 1.06% FillPatchIterator::Initialize 41 0.02763 0.03236 0.0348 1.04% Gravity::interpolate_monopole_grav() 21 0.02652 0.02683 0.02747 0.82% Castro::construct_new_gravity_source() 10 0.02333 0.02445 0.02636 0.79% Castro::computeTemp() 63 0.01646 0.01806 0.01867 0.56% Castro::initialize_do_advance() 10 0.01186 0.01646 0.01783 0.53% Castro::initialize_advance() 10 0.005328 0.01058 0.01362 0.41% FabArray::Saxpy() 20 0.01053 0.0124 0.01359 0.41% MultiFab::contains_nan() 20 0.01068 0.01162 0.01303 0.39% FabArray::setDomainBndry() 41 0.008117 0.0108 0.01275 0.38% Amr::writePlotFile() 2 0.007949 0.01059 0.01221 0.36% VisMF::Write(FabArray) 2 0.008886 0.009635 0.01209 0.36% Castro::construct_old_gravity_source() 10 0.006901 0.00942 0.01015 0.30% Castro::initMFs() 1 0.00652 0.007177 0.008703 0.26% Castro::enforce_min_density() 62 0.005769 0.006116 0.006492 0.19% Castro::construct_new_source() 50 0.00564 0.005981 0.006217 0.19% main() 1 0.003654 0.004095 0.004505 0.13% Gravity::get_new_grav_vector() 11 0.002697 0.00338 0.003745 0.11% Amr::coarseTimeStep() 10 0.0007418 0.001537 0.002511 0.07% Gravity::get_old_grav_vector() 10 0.001641 0.001989 0.002255 0.07% Castro::finalize_do_advance() 10 0.0005648 0.001077 0.001251 0.04% AmrLevel::FillPatch() 41 0.0007443 0.001112 0.001242 0.04% Amr::timeStep() 10 0.0001284 0.0001802 0.0003493 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002839 0.0002988 0.0003127 0.01% Castro::do_advance_ctu() 10 0.0001428 0.0001636 0.0001878 0.01% Castro::clean_state() 62 0.0001352 0.000152 0.000176 0.01% StateDataPhysBCFunct::() 41 9.433e-05 0.0001059 0.0001243 0.00% FillPatchIterator::FillFromLevel0() 41 9.551e-05 0.0001063 0.0001155 0.00% Castro::do_old_sources() 10 7.646e-05 9.104e-05 0.0001107 0.00% FabArray::ParallelCopy() 41 8.118e-05 9.038e-05 9.984e-05 0.00% Castro::Castro() 1 4.551e-05 6.831e-05 9.315e-05 0.00% FillPatchSingleLevel 41 6.619e-05 7.187e-05 8.134e-05 0.00% Castro::construct_old_source() 50 4.976e-05 6.456e-05 7.891e-05 0.00% Castro::do_new_sources() 10 5.441e-05 6.113e-05 7.58e-05 0.00% Amr::FinalizeInit() 1 3.657e-06 1.341e-05 7.406e-05 0.00% Castro::apply_source_to_state() 20 4.941e-05 5.333e-05 6.004e-05 0.00% Castro::subcycle_advance_ctu() 10 4.116e-05 4.947e-05 5.847e-05 0.00% Amr::defBaseLevel() 1 4.129e-05 4.749e-05 5.641e-05 0.00% Castro::advance() 10 4.068e-05 4.605e-05 5.351e-05 0.00% Castro::construct_old_gravity() 10 3.448e-05 3.813e-05 4.553e-05 0.00% Castro::construct_new_gravity() 10 3.112e-05 3.424e-05 4.233e-05 0.00% Castro::expand_state() 10 1.909e-05 2.34e-05 2.949e-05 0.00% Castro::check_for_nan() 20 2.35e-05 2.564e-05 2.719e-05 0.00% Castro::post_init() 1 1.449e-05 1.829e-05 2.542e-05 0.00% Castro::post_timestep() 10 1.466e-05 1.696e-05 2.183e-05 0.00% Castro::computeNewDt() 9 9.005e-06 1.053e-05 1.311e-05 0.00% Castro::computeInitialDt() 2 3.203e-06 3.911e-06 5.454e-06 0.00% Amr::InitializeInit() 1 2.485e-06 3.174e-06 5.344e-06 0.00% Amr::init() 1 1.811e-06 2.231e-06 3.347e-06 0.00% Amr::initialInit() 1 1.488e-06 1.871e-06 2.183e-06 0.00% Other 199 0.01036 0.01279 0.01525 0.46% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.347 3.348 3.349 100.00% Amr::coarseTimeStep() 10 3.171 3.171 3.171 94.67% Amr::timeStep() 10 3.159 3.159 3.16 94.36% Castro::advance() 10 3.143 3.144 3.144 93.87% Castro::subcycle_advance_ctu() 10 3.068 3.073 3.086 92.15% Castro::do_advance_ctu() 10 3.068 3.072 3.086 92.15% Castro::construct_ctu_hydro_source() 10 2.341 2.345 2.348 70.10% Gravity::make_radial_gravity() 21 0.3046 0.3139 0.3211 9.59% AmrLevel::FillPatch() 41 0.1821 0.1959 0.2175 6.50% Gravity::get_new_grav_vector() 11 0.2064 0.2073 0.2079 6.21% Castro::construct_old_gravity() 10 0.1814 0.1871 0.1932 5.77% Gravity::get_old_grav_vector() 10 0.1808 0.1864 0.1925 5.75% FillPatchIterator::Initialize 41 0.1532 0.1644 0.1923 5.74% Castro::construct_new_gravity() 10 0.1842 0.185 0.1857 5.54% Castro::initialize_do_advance() 10 0.1586 0.1646 0.1731 5.17% Amr::init() 1 0.1644 0.1651 0.1658 4.95% FillPatchIterator::FillFromLevel0() 41 0.1133 0.1212 0.1553 4.64% FillPatchSingleLevel 41 0.1132 0.1211 0.1552 4.63% check_for_negative_density() 10 0.04266 0.1003 0.1533 4.58% Amr::initialInit() 1 0.1495 0.1503 0.1511 4.51% Castro::expand_state() 10 0.104 0.1106 0.1247 3.72% FabArray::ParallelCopy() 41 0.08056 0.08899 0.1236 3.69% Amr::InitializeInit() 1 0.05973 0.09233 0.1235 3.69% Amr::defBaseLevel() 1 0.05973 0.09233 0.1235 3.69% Castro::clean_state() 62 0.1092 0.1153 0.1189 3.55% Castro::initData() 1 0.04262 0.07471 0.1048 3.13% Castro::do_old_sources() 10 0.08882 0.09265 0.09536 2.85% Amr::FinalizeInit() 1 0.02624 0.05801 0.09124 2.72% Castro::estTimeStep() 21 0.02179 0.05984 0.08907 2.66% FabArray::ParallelCopy_finish() 41 0.03842 0.04828 0.08725 2.60% amrex::Copy() 193 0.06398 0.07676 0.08516 2.54% Castro::initialize_advance() 10 0.05332 0.06774 0.07252 2.17% FabArray::setVal() 143 0.05476 0.06543 0.0714 2.13% Castro::do_new_sources() 10 0.06032 0.06371 0.0689 2.06% Castro::computeInitialDt() 2 0.002125 0.03393 0.06707 2.00% Castro::computeTemp() 63 0.05736 0.06395 0.06703 2.00% Castro::reset_internal_energy(MultiFab) 63 0.04089 0.04589 0.0484 1.45% Castro::reset_internal_energy(Fab) 1008 0.0406 0.04559 0.04809 1.44% Castro::normalize_species() 62 0.04508 0.0459 0.04695 1.40% FabArray::ParallelCopy_nowait() 41 0.03624 0.04062 0.04206 1.26% StateDataPhysBCFunct::() 41 0.02984 0.03206 0.0357 1.07% StateData::FillBoundary(geom) 41 0.02974 0.03196 0.03557 1.06% Castro::construct_new_source() 50 0.02927 0.03043 0.03246 0.97% Gravity::interpolate_monopole_grav() 21 0.02652 0.02683 0.02747 0.82% Castro::construct_new_gravity_source() 10 0.02333 0.02445 0.02636 0.79% Castro::post_init() 1 0.02333 0.02357 0.02373 0.71% Amr::writePlotFile() 2 0.02274 0.02282 0.02306 0.69% Castro::finalize_do_advance() 10 0.01224 0.01844 0.02283 0.68% Castro::post_timestep() 10 0.01479 0.01569 0.01632 0.49% Castro::apply_source_to_state() 20 0.01058 0.01246 0.01364 0.41% FabArray::Saxpy() 20 0.01053 0.0124 0.01359 0.41% Castro::check_for_nan() 20 0.0107 0.01164 0.01306 0.39% MultiFab::contains_nan() 20 0.01068 0.01162 0.01303 0.39% FabArray::setDomainBndry() 41 0.008117 0.0108 0.01275 0.38% Castro::Castro() 1 0.01036 0.01105 0.01242 0.37% VisMF::Write(FabArray) 2 0.008886 0.009635 0.01209 0.36% Castro::construct_old_source() 50 0.006951 0.009484 0.01023 0.31% Castro::construct_old_gravity_source() 10 0.006901 0.00942 0.01015 0.30% Castro::initMFs() 1 0.00652 0.007177 0.008703 0.26% Castro::computeNewDt() 9 0.00853 0.008559 0.008579 0.26% Castro::enforce_min_density() 62 0.005769 0.006116 0.006492 0.19% Other 199 0.02047 0.0242 0.02815 0.84% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 34 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8668 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6775 KiB 6783 KiB 6788 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4576 KiB 4584 KiB 4607 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 205 KiB 221 KiB 248 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2812 KiB 2815 KiB 2816 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 231 KiB 239 KiB 244 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 41 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-6-g5da47374715c) finalized