Initializing AMReX (25.03-6-g5da47374715c)...
MPI initialized with 8 MPI processes
MPI initialized with thread support level 3
AMReX (25.03-6-g5da47374715c) initialized
Starting run at 05:38:38 UTC on 2025-03-12.
Successfully read inputs file ...
Castro git describe: 25.03-4-g0d20a39b0
AMReX git describe: 25.03-6-g5da473747
Microphysics git describe: 25.03-1-gf4280cab
reading extern runtime parameters ...
3 Species:
C12 O16 Mg24
Successfully read inputs file ...
INITIAL GRIDS
Level 0 8 grids 262144 cells 100 % of domain
smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32
PLOTFILE: file = dustcollapse-3d-monopole_plt00000
Write plotfile time = 0.01444322 seconds
[Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05
[Level 0 step 1] Advanced 262144 cells
STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05
[STEP 1] Coarse TimeStep time: 0.334831854
[STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05
[Level 0 step 2] Advanced 262144 cells
STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05
[STEP 2] Coarse TimeStep time: 0.325518149
[STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05
[Level 0 step 3] Advanced 262144 cells
STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05
[STEP 3] Coarse TimeStep time: 0.308999089
[STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05
[Level 0 step 4] Advanced 262144 cells
STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05
[STEP 4] Coarse TimeStep time: 0.309887859
[STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05
[Level 0 step 5] Advanced 262144 cells
STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05
[STEP 5] Coarse TimeStep time: 0.357858811
[STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05
[Level 0 step 6] Advanced 262144 cells
STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05
[STEP 6] Coarse TimeStep time: 0.30129135
[STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05
[Level 0 step 7] Advanced 262144 cells
STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05
[STEP 7] Coarse TimeStep time: 0.329669952
[STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05
[Level 0 step 8] Advanced 262144 cells
STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05
[STEP 8] Coarse TimeStep time: 0.301541776
[STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05
[Level 0 step 9] Advanced 262144 cells
STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05
[STEP 9] Coarse TimeStep time: 0.29544766
[STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
[Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05
[Level 0 step 10] Advanced 262144 cells
STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05
[STEP 10] Coarse TimeStep time: 0.298467769
[STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998]
PLOTFILE: file = dustcollapse-3d-monopole_plt00010
Write plotfile time = 0.309299959 seconds
Ending run at 05:38:42 UTC on 2025-03-12.
Run time = 3.663816491
Run time without initialization = 3.477814028
Average number of zones advanced per microsecond: 0.754
Average number of zones advanced per microsecond per rank: 0.094
TinyProfiler total time across processes [min...avg...max]: 3.6582 ... 3.6607 ... 3.6640
-------------------------------------------------------------------------------------------
Name NCalls Excl. Min Excl. Avg Excl. Max Max %
-------------------------------------------------------------------------------------------
Castro::construct_ctu_hydro_source() 10 2.1557 2.2252 2.2622 61.74%
Amr::writePlotFile() 2 0.3086 0.3117 0.3137 8.56%
Gravity::make_radial_gravity() 21 0.2861 0.2954 0.3135 8.56%
check_for_negative_density() 10 0.05379 0.0933 0.1651 4.51%
Castro::initData() 1 0.03928 0.07658 0.1123 3.07%
Castro::estTimeStep() 21 0.02331 0.0669 0.1101 3.01%
FabArray::ParallelCopy_finish() 41 0.04118 0.04949 0.09029 2.46%
amrex::Copy() 193 0.06307 0.07791 0.08602 2.35%
FabArray::setVal() 143 0.0528 0.06482 0.07031 1.92%
Castro::reset_internal_energy(Fab) 1008 0.04186 0.04589 0.04841 1.32%
Castro::normalize_species() 62 0.04454 0.04573 0.04653 1.27%
FabArray::ParallelCopy_nowait() 41 0.03578 0.0414 0.04368 1.19%
StateData::FillBoundary(geom) 41 0.02871 0.03195 0.03527 0.96%
FillPatchIterator::Initialize 41 0.02798 0.03238 0.03458 0.94%
Gravity::interpolate_monopole_grav() 21 0.02602 0.0267 0.02721 0.74%
Castro::construct_new_gravity_source() 10 0.02301 0.0244 0.02597 0.71%
Castro::computeTemp() 63 0.01664 0.01818 0.01895 0.52%
Castro::initialize_do_advance() 10 0.01155 0.01668 0.01833 0.50%
FabArray::Saxpy() 20 0.01048 0.01263 0.0138 0.38%
Castro::initialize_advance() 10 0.005319 0.01066 0.01338 0.37%
FabArray::setDomainBndry() 41 0.008436 0.01045 0.01291 0.35%
VisMF::Write(FabArray) 2 0.00907 0.009775 0.01261 0.34%
MultiFab::contains_nan() 20 0.01031 0.01124 0.01229 0.34%
Castro::construct_old_gravity_source() 10 0.007016 0.009526 0.01025 0.28%
Castro::initMFs() 1 0.006577 0.00834 0.01019 0.28%
StateData::define() 4 0.005466 0.007054 0.008368 0.23%
Castro::construct_new_source() 50 0.005371 0.006064 0.006347 0.17%
main() 1 0.003905 0.004235 0.004474 0.12%
Gravity::get_new_grav_vector() 11 0.002844 0.003571 0.003881 0.11%
Amr::coarseTimeStep() 10 0.0007395 0.001582 0.003027 0.08%
Gravity::get_old_grav_vector() 10 0.001593 0.002033 0.002559 0.07%
Castro::finalize_do_advance() 10 0.0006205 0.001078 0.001166 0.03%
AmrLevel::FillPatch() 41 0.0008814 0.0009427 0.001078 0.03%
Castro::reset_internal_energy(MultiFab) 63 0.0002901 0.000322 0.0004609 0.01%
Amr::timeStep() 10 0.0001359 0.0001985 0.0004605 0.01%
Castro::do_advance_ctu() 10 0.0001464 0.0001766 0.0002148 0.01%
Castro::clean_state() 62 0.000154 0.0001697 0.000198 0.01%
FillPatchIterator::FillFromLevel0() 41 0.000103 0.000117 0.0001411 0.00%
StateDataPhysBCFunct::() 41 0.0001001 0.0001125 0.0001259 0.00%
Castro::do_old_sources() 10 7.205e-05 9.597e-05 0.0001132 0.00%
FabArray::ParallelCopy() 41 9.64e-05 9.871e-05 0.0001027 0.00%
Castro::Castro() 1 4.657e-05 6.924e-05 9.111e-05 0.00%
FillPatchSingleLevel 41 6.521e-05 7.274e-05 8.659e-05 0.00%
Castro::construct_old_source() 50 5.357e-05 6.695e-05 7.859e-05 0.00%
Castro::do_new_sources() 10 5.961e-05 6.778e-05 7.846e-05 0.00%
Castro::apply_source_to_state() 20 4.35e-05 5.508e-05 7.37e-05 0.00%
Amr::FinalizeInit() 1 3.799e-06 1.302e-05 7.263e-05 0.00%
Castro::subcycle_advance_ctu() 10 3.858e-05 5.135e-05 7.132e-05 0.00%
Castro::advance() 10 4.118e-05 5.351e-05 7.03e-05 0.00%
Amr::defBaseLevel() 1 4.368e-05 5.272e-05 6.028e-05 0.00%
Castro::construct_old_gravity() 10 3.413e-05 4.239e-05 4.915e-05 0.00%
Castro::construct_new_gravity() 10 3.051e-05 3.459e-05 3.859e-05 0.00%
Castro::expand_state() 10 2.601e-05 2.857e-05 3.473e-05 0.00%
Castro::check_for_nan() 20 2.382e-05 2.608e-05 3.119e-05 0.00%
Castro::post_init() 1 1.484e-05 1.81e-05 2.389e-05 0.00%
Castro::post_timestep() 10 1.554e-05 1.794e-05 2.146e-05 0.00%
AmrLevel::AmrLevel(dm) 1 8.14e-06 1.289e-05 1.75e-05 0.00%
Castro::computeNewDt() 9 9.321e-06 1.072e-05 1.178e-05 0.00%
Amr::initialInit() 1 1.685e-06 2.82e-06 8.174e-06 0.00%
Amr::InitializeInit() 1 2.798e-06 3.521e-06 5.989e-06 0.00%
Castro::computeInitialDt() 2 3.158e-06 3.872e-06 4.395e-06 0.00%
Amr::init() 1 1.72e-06 2.194e-06 2.797e-06 0.00%
Other 256 0.01062 0.01486 0.01904 0.52%
-------------------------------------------------------------------------------------------
-------------------------------------------------------------------------------------------
Name NCalls Incl. Min Incl. Avg Incl. Max Max %
-------------------------------------------------------------------------------------------
main() 1 3.658 3.661 3.664 100.00%
Amr::coarseTimeStep() 10 3.164 3.164 3.164 86.36%
Amr::timeStep() 10 3.151 3.153 3.154 86.07%
Castro::advance() 10 3.136 3.137 3.137 85.62%
Castro::subcycle_advance_ctu() 10 3.059 3.065 3.081 84.10%
Castro::do_advance_ctu() 10 3.059 3.065 3.081 84.09%
Castro::construct_ctu_hydro_source() 10 2.335 2.34 2.344 63.96%
Gravity::make_radial_gravity() 21 0.3018 0.3114 0.3266 8.91%
Amr::writePlotFile() 2 0.324 0.3242 0.3246 8.86%
AmrLevel::FillPatch() 41 0.1784 0.1978 0.2174 5.93%
Gravity::get_new_grav_vector() 11 0.2045 0.206 0.2074 5.66%
Castro::construct_old_gravity() 10 0.1796 0.1867 0.1986 5.42%
Gravity::get_old_grav_vector() 10 0.1787 0.186 0.198 5.40%
FillPatchIterator::Initialize 41 0.1492 0.1662 0.1924 5.25%
Amr::init() 1 0.1804 0.1826 0.1856 5.07%
Castro::construct_new_gravity() 10 0.1822 0.1831 0.1841 5.03%
Amr::initialInit() 1 0.1655 0.1679 0.171 4.67%
Castro::initialize_do_advance() 10 0.1561 0.1648 0.1695 4.63%
check_for_negative_density() 10 0.05379 0.0933 0.1651 4.51%
FillPatchIterator::FillFromLevel0() 41 0.1116 0.1233 0.1554 4.24%
FillPatchSingleLevel 41 0.1115 0.1232 0.1552 4.24%
Amr::InitializeInit() 1 0.0634 0.1019 0.1389 3.79%
Amr::defBaseLevel() 1 0.06339 0.1019 0.1389 3.79%
FabArray::ParallelCopy() 41 0.08165 0.09108 0.1263 3.45%
Castro::expand_state() 10 0.1013 0.1112 0.1225 3.34%
Castro::clean_state() 62 0.1085 0.1155 0.1187 3.24%
Castro::initData() 1 0.043 0.08024 0.1162 3.17%
Castro::estTimeStep() 21 0.02331 0.0669 0.1101 3.01%
Amr::FinalizeInit() 1 0.02695 0.06595 0.1076 2.94%
Castro::do_old_sources() 10 0.08834 0.09368 0.09668 2.64%
FabArray::ParallelCopy_finish() 41 0.04118 0.04949 0.09029 2.46%
amrex::Copy() 193 0.06307 0.07791 0.08602 2.35%
Castro::computeInitialDt() 2 0.002139 0.04128 0.08276 2.26%
Castro::initialize_advance() 10 0.05151 0.0678 0.07424 2.03%
FabArray::setVal() 143 0.0528 0.06482 0.07031 1.92%
Castro::do_new_sources() 10 0.05819 0.06376 0.06891 1.88%
Castro::computeTemp() 63 0.05882 0.0644 0.06766 1.85%
Castro::reset_internal_energy(MultiFab) 63 0.04218 0.04622 0.04871 1.33%
Castro::reset_internal_energy(Fab) 1008 0.04186 0.04589 0.04841 1.32%
Castro::normalize_species() 62 0.04454 0.04573 0.04653 1.27%
FabArray::ParallelCopy_nowait() 41 0.03589 0.0415 0.04376 1.19%
StateDataPhysBCFunct::() 41 0.02883 0.03206 0.03539 0.97%
StateData::FillBoundary(geom) 41 0.02871 0.03195 0.03527 0.96%
Castro::construct_new_source() 50 0.02843 0.03047 0.03217 0.88%
Gravity::interpolate_monopole_grav() 21 0.02602 0.0267 0.02721 0.74%
Castro::construct_new_gravity_source() 10 0.02301 0.0244 0.02597 0.71%
Castro::post_init() 1 0.02399 0.02415 0.02428 0.66%
Castro::finalize_do_advance() 10 0.01313 0.01808 0.0233 0.64%
Castro::post_timestep() 10 0.015 0.01593 0.01691 0.46%
Castro::Castro() 1 0.009639 0.01229 0.01481 0.40%
Castro::apply_source_to_state() 20 0.01053 0.01269 0.01386 0.38%
FabArray::Saxpy() 20 0.01048 0.01263 0.0138 0.38%
FabArray::setDomainBndry() 41 0.008436 0.01045 0.01291 0.35%
VisMF::Write(FabArray) 2 0.00907 0.009775 0.01261 0.34%
Castro::check_for_nan() 20 0.01034 0.01127 0.01231 0.34%
MultiFab::contains_nan() 20 0.01031 0.01124 0.01229 0.34%
Castro::construct_old_source() 50 0.007073 0.009593 0.01033 0.28%
Castro::construct_old_gravity_source() 10 0.007016 0.009526 0.01025 0.28%
Castro::initMFs() 1 0.006577 0.00834 0.01019 0.28%
Castro::computeNewDt() 9 0.008618 0.008642 0.00866 0.24%
AmrLevel::AmrLevel(dm) 1 0.005475 0.007067 0.008385 0.23%
StateData::define() 4 0.005466 0.007054 0.008368 0.23%
Other 256 0.01523 0.02213 0.02956 0.81%
-------------------------------------------------------------------------------------------
Unused ParmParse Variables:
[TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2]
[TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2]
Pinned Memory Usage:
---------------------------------------------------------------------------------------------------------------------
Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max
---------------------------------------------------------------------------------------------------------------------
The_Pinned_Arena::Initialize() 8 8 30 B 35 B 44 B 8192 KiB 8192 KiB 8192 KiB
---------------------------------------------------------------------------------------------------------------------
Cpu Memory Usage:
---------------------------------------------------------------------------------------------------------------------------
Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max
---------------------------------------------------------------------------------------------------------------------------
Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 13 MiB 24 MiB 24 MiB 24 MiB
Castro::initMFs() 48 48 8654 KiB 8664 KiB 8667 KiB 8712 KiB 8712 KiB 8712 KiB
Castro::swap_state_time_levels() 32 32 6769 KiB 6781 KiB 6788 KiB 7153 KiB 7153 KiB 7153 KiB
StateData::define() 32 32 7125 KiB 7137 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB
Castro::initialize_do_advance() 80 80 4176 KiB 4183 KiB 4208 KiB 5000 KiB 5000 KiB 5000 KiB
FillPatchIterator::Initialize 328 328 184 KiB 204 KiB 225 KiB 5000 KiB 5000 KiB 5000 KiB
Amr::writePlotFile() 16 16 13 KiB 15 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB
Castro::initialize_advance() 80 80 2565 KiB 2570 KiB 2572 KiB 3000 KiB 3000 KiB 3000 KiB
Gravity::make_radial_gravity() 168 168 209 KiB 216 KiB 227 KiB 2560 KiB 2560 KiB 2560 KiB
FabArray::ParallelCopy_nowait() 656 656 34 KiB 38 KiB 53 KiB 2170 KiB 2170 KiB 2170 KiB
Castro::buildMetrics() 32 32 2025 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB
Gravity::get_new_grav_vector() 88 88 71 KiB 72 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB
Gravity::get_old_grav_vector() 80 80 62 KiB 65 KiB 69 KiB 1286 KiB 1286 KiB 1286 KiB
---------------------------------------------------------------------------------------------------------------------------
AMReX (25.03-6-g5da47374715c) finalized