Initializing AMReX (25.03-6-g5da47374715c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-6-g5da47374715c) initialized Starting run at 05:28:19 UTC on 2025-03-13. Successfully read inputs file ... Castro git describe: 25.03-8-gc82230870 AMReX git describe: 25.03-6-g5da473747 Microphysics git describe: 25.03-1-gf4280cab reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015953341 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.359506787 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.331112336 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.347346371 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.361950235 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.361293647 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.348703463 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.34022581 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.339762773 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.349183433 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.34979814 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 1.325669987 seconds Ending run at 05:28:24 UTC on 2025-03-13. Run time = 5.011597403 Run time without initialization = 4.821920467 Average number of zones advanced per microsecond: 0.544 Average number of zones advanced per microsecond per rank: 0.068 TinyProfiler total time across processes [min...avg...max]: 5.0095 ... 5.0108 ... 5.0124 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2594 2.3910 2.5158 50.19% Amr::writePlotFile() 2 1.324 1.328 1.329 26.52% Gravity::make_radial_gravity() 21 0.2963 0.3114 0.3375 6.73% check_for_negative_density() 10 0.04154 0.1706 0.3013 6.01% Castro::estTimeStep() 21 0.03109 0.09198 0.1401 2.80% Castro::initData() 1 0.03743 0.07291 0.121 2.41% FabArray::ParallelCopy_finish() 41 0.04332 0.05673 0.1088 2.17% amrex::Copy() 193 0.05672 0.0835 0.09073 1.81% FabArray::setVal() 143 0.06523 0.07783 0.08256 1.65% Castro::normalize_species() 62 0.04535 0.04693 0.05013 1.00% Castro::reset_internal_energy(Fab) 1008 0.04622 0.04745 0.04899 0.98% FabArray::ParallelCopy_nowait() 41 0.03536 0.0451 0.04859 0.97% FillPatchIterator::Initialize 41 0.02979 0.03606 0.042 0.84% Castro::construct_new_gravity_source() 10 0.02315 0.0293 0.0402 0.80% StateData::FillBoundary(geom) 41 0.02991 0.03351 0.03611 0.72% Gravity::interpolate_monopole_grav() 21 0.02641 0.02681 0.02713 0.54% Castro::computeTemp() 63 0.01837 0.01929 0.02273 0.45% FabArray::Saxpy() 20 0.01046 0.01511 0.02078 0.41% Castro::initialize_do_advance() 10 0.01119 0.01817 0.02059 0.41% VisMF::Write(FabArray) 2 0.009195 0.01058 0.01668 0.33% FabArray::setDomainBndry() 41 0.006646 0.01025 0.01296 0.26% MultiFab::contains_nan() 20 0.01066 0.01187 0.01292 0.26% Castro::initialize_advance() 10 0.005081 0.01018 0.01268 0.25% Castro::construct_old_gravity_source() 10 0.00655 0.01097 0.01239 0.25% Castro::construct_new_source() 50 0.005589 0.007324 0.01096 0.22% Amr::coarseTimeStep() 10 0.002317 0.006349 0.008844 0.18% main() 1 0.004199 0.005761 0.006713 0.13% Gravity::get_new_grav_vector() 11 0.002446 0.003716 0.004692 0.09% Gravity::get_old_grav_vector() 10 0.001402 0.002069 0.002805 0.06% Castro::finalize_do_advance() 10 0.0006767 0.00114 0.0013 0.03% AmrLevel::FillPatch() 41 0.0008541 0.0009813 0.001125 0.02% Castro::Castro() 1 4.97e-05 0.0001563 0.0007235 0.01% Amr::timeStep() 10 0.0001437 0.0001949 0.0004011 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000289 0.0003038 0.0003269 0.01% Castro::do_advance_ctu() 10 0.0001552 0.000178 0.0002036 0.00% Castro::clean_state() 62 0.0001393 0.0001562 0.0001796 0.00% StateDataPhysBCFunct::() 41 0.0001089 0.0001199 0.0001583 0.00% FillPatchIterator::FillFromLevel0() 41 9.738e-05 0.0001135 0.0001496 0.00% Castro::do_old_sources() 10 8.082e-05 9.784e-05 0.0001194 0.00% FabArray::ParallelCopy() 41 7.827e-05 9.496e-05 0.0001074 0.00% Castro::apply_source_to_state() 20 4.825e-05 6.698e-05 9.694e-05 0.00% Castro::do_new_sources() 10 6.311e-05 7.327e-05 8.746e-05 0.00% Castro::construct_old_source() 50 4.779e-05 6.907e-05 8.697e-05 0.00% FillPatchSingleLevel 41 6.101e-05 6.986e-05 7.897e-05 0.00% Amr::FinalizeInit() 1 4.286e-06 1.445e-05 7.326e-05 0.00% Castro::advance() 10 4.038e-05 4.907e-05 6.285e-05 0.00% Castro::subcycle_advance_ctu() 10 4.319e-05 5.265e-05 6.022e-05 0.00% Amr::defBaseLevel() 1 3.897e-05 4.526e-05 4.99e-05 0.00% Castro::construct_old_gravity() 10 3.436e-05 4.235e-05 4.78e-05 0.00% Castro::construct_new_gravity() 10 3.224e-05 3.669e-05 4.138e-05 0.00% Castro::check_for_nan() 20 2.208e-05 2.697e-05 3.504e-05 0.00% Castro::expand_state() 10 1.704e-05 2.364e-05 3.104e-05 0.00% Castro::post_timestep() 10 1.781e-05 2.242e-05 3.039e-05 0.00% Castro::post_init() 1 1.452e-05 1.666e-05 2.235e-05 0.00% Amr::InitializeInit() 1 2.41e-06 4.119e-06 1.346e-05 0.00% Castro::computeNewDt() 9 1.009e-05 1.098e-05 1.33e-05 0.00% Castro::computeInitialDt() 2 3.5e-06 4.147e-06 5.542e-06 0.00% Amr::initialInit() 1 1.46e-06 1.939e-06 2.64e-06 0.00% Amr::init() 1 1.602e-06 1.924e-06 2.395e-06 0.00% Other 262 0.02187 0.02599 0.03139 0.63% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 5.009 5.011 5.012 100.00% Amr::coarseTimeStep() 10 3.49 3.49 3.49 69.62% Amr::timeStep() 10 3.47 3.473 3.477 69.36% Castro::advance() 10 3.454 3.455 3.456 68.96% Castro::subcycle_advance_ctu() 10 3.369 3.373 3.389 67.60% Castro::do_advance_ctu() 10 3.369 3.373 3.389 67.60% Castro::construct_ctu_hydro_source() 10 2.579 2.583 2.59 51.67% Amr::writePlotFile() 2 1.341 1.342 1.342 26.77% Gravity::make_radial_gravity() 21 0.3136 0.3275 0.3487 6.96% check_for_negative_density() 10 0.04154 0.1706 0.3013 6.01% AmrLevel::FillPatch() 41 0.1994 0.2171 0.2332 4.65% Gravity::get_new_grav_vector() 11 0.2126 0.2144 0.2161 4.31% Castro::construct_old_gravity() 10 0.1844 0.1973 0.2153 4.30% Gravity::get_old_grav_vector() 10 0.1836 0.1964 0.2145 4.28% FillPatchIterator::Initialize 41 0.1693 0.1821 0.211 4.21% Castro::initialize_do_advance() 10 0.171 0.181 0.1947 3.88% Castro::construct_new_gravity() 10 0.1875 0.189 0.1905 3.80% Amr::init() 1 0.1888 0.1894 0.1899 3.79% FillPatchIterator::FillFromLevel0() 41 0.1238 0.1358 0.1746 3.48% FillPatchSingleLevel 41 0.1237 0.1357 0.1745 3.48% Amr::initialInit() 1 0.1729 0.1734 0.1739 3.47% FabArray::ParallelCopy() 41 0.09068 0.102 0.1444 2.88% Amr::InitializeInit() 1 0.05778 0.0945 0.1435 2.86% Amr::defBaseLevel() 1 0.05778 0.09449 0.1435 2.86% Castro::estTimeStep() 21 0.03109 0.09198 0.1401 2.80% Castro::expand_state() 10 0.1144 0.1246 0.1376 2.74% Castro::initData() 1 0.04151 0.07685 0.1249 2.49% Castro::clean_state() 62 0.1165 0.1196 0.122 2.43% Amr::FinalizeInit() 1 0.0296 0.07889 0.1152 2.30% FabArray::ParallelCopy_finish() 41 0.04332 0.05673 0.1088 2.17% Castro::do_old_sources() 10 0.09674 0.1031 0.1054 2.10% amrex::Copy() 193 0.05672 0.0835 0.09073 1.81% Castro::computeInitialDt() 2 0.002476 0.05208 0.08861 1.77% Castro::do_new_sources() 10 0.05924 0.07234 0.08343 1.66% FabArray::setVal() 143 0.06523 0.07783 0.08256 1.65% Castro::initialize_advance() 10 0.06172 0.07754 0.08236 1.64% Castro::computeTemp() 63 0.06529 0.06705 0.06924 1.38% Castro::normalize_species() 62 0.04535 0.04693 0.05013 1.00% Castro::reset_internal_energy(MultiFab) 63 0.04651 0.04776 0.04928 0.98% Castro::reset_internal_energy(Fab) 1008 0.04622 0.04745 0.04899 0.98% FabArray::ParallelCopy_nowait() 41 0.03548 0.04519 0.04867 0.97% Castro::construct_new_source() 50 0.02874 0.03662 0.04796 0.96% Castro::finalize_do_advance() 10 0.02038 0.03158 0.04509 0.90% Castro::construct_new_gravity_source() 10 0.02315 0.0293 0.0402 0.80% StateDataPhysBCFunct::() 41 0.03002 0.03363 0.03627 0.72% StateData::FillBoundary(geom) 41 0.02991 0.03351 0.03611 0.72% Gravity::interpolate_monopole_grav() 21 0.02641 0.02681 0.02713 0.54% Castro::post_init() 1 0.02612 0.02637 0.0266 0.53% Castro::apply_source_to_state() 20 0.01051 0.01518 0.02087 0.42% FabArray::Saxpy() 20 0.01046 0.01511 0.02078 0.41% Castro::post_timestep() 10 0.01568 0.01712 0.02029 0.40% VisMF::Write(FabArray) 2 0.009195 0.01058 0.01668 0.33% FabArray::setDomainBndry() 41 0.006646 0.01025 0.01296 0.26% Castro::check_for_nan() 20 0.01069 0.01189 0.01295 0.26% MultiFab::contains_nan() 20 0.01066 0.01187 0.01292 0.26% Castro::construct_old_source() 50 0.006606 0.01104 0.01248 0.25% Castro::construct_old_gravity_source() 10 0.00655 0.01097 0.01239 0.25% Castro::Castro() 1 0.01042 0.01129 0.01218 0.24% Castro::computeNewDt() 9 0.00945 0.00947 0.00949 0.19% Other 262 0.03185 0.03815 0.04584 0.91% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 18 B 24 B 32 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 9 MiB 10 MiB 11 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8673 KiB 8680 KiB 8683 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6866 KiB 6869 KiB 6870 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7136 KiB 7143 KiB 7144 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 3359 KiB 3363 KiB 3376 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 151 KiB 165 KiB 178 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 11 KiB 12 KiB 15 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2066 KiB 2068 KiB 2069 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 159 KiB 166 KiB 177 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 28 KiB 32 KiB 45 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2029 KiB 2031 KiB 2031 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 54 KiB 54 KiB 55 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 47 KiB 50 KiB 54 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-6-g5da47374715c) finalized