Initializing AMReX (25.03-7-g5b193594596a)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.03-7-g5b193594596a) initialized Starting run at 05:22:14 UTC on 2025-03-14. Successfully read inputs file ... Castro git describe: 25.03-8-gc82230870 AMReX git describe: 25.03-7-g5b1935945 Microphysics git describe: 25.03-1-gf4280cab reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014604842 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.360303021 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.347843478 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.339837667 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.342163611 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.38570896 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.344294167 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.350941352 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.349090827 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.348882786 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.33623075 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010593664 seconds Ending run at 05:22:18 UTC on 2025-03-14. Run time = 3.688271784 Run time without initialization = 3.524526897 Average number of zones advanced per microsecond: 0.744 Average number of zones advanced per microsecond per rank: 0.093 TinyProfiler total time across processes [min...avg...max]: 3.6846 ... 3.6877 ... 3.6887 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2487 2.3810 2.5363 68.76% check_for_negative_density() 10 0.04935 0.2042 0.3337 9.05% Gravity::make_radial_gravity() 21 0.2937 0.3023 0.3268 8.86% FabArray::ParallelCopy_finish() 41 0.05593 0.07336 0.1292 3.50% Castro::initData() 1 0.03725 0.07131 0.1014 2.75% amrex::Copy() 193 0.06407 0.08505 0.09678 2.62% Castro::estTimeStep() 21 0.02331 0.05653 0.09228 2.50% FabArray::setVal() 143 0.05916 0.08039 0.08822 2.39% Castro::reset_internal_energy(Fab) 1008 0.04543 0.04814 0.05227 1.42% Castro::normalize_species() 62 0.04567 0.04653 0.04796 1.30% FabArray::ParallelCopy_nowait() 41 0.03663 0.0451 0.04724 1.28% FillPatchIterator::Initialize 41 0.03013 0.03555 0.03997 1.08% StateData::FillBoundary(geom) 41 0.02976 0.03263 0.03521 0.95% Castro::construct_new_gravity_source() 10 0.02585 0.02759 0.03026 0.82% Gravity::interpolate_monopole_grav() 21 0.0267 0.02705 0.02744 0.74% Castro::initialize_do_advance() 10 0.01004 0.0176 0.02034 0.55% Castro::computeTemp() 63 0.01802 0.01863 0.01927 0.52% FabArray::Saxpy() 20 0.0125 0.01524 0.01675 0.45% VisMF::Write(FabArray) 2 0.00943 0.01082 0.01544 0.42% MultiFab::contains_nan() 20 0.0108 0.01198 0.01426 0.39% Castro::initialize_advance() 10 0.00449 0.01164 0.01307 0.35% Castro::construct_old_gravity_source() 10 0.0065 0.01105 0.01243 0.34% FabArray::setDomainBndry() 41 0.007057 0.009913 0.01224 0.33% Amr::writePlotFile() 2 0.00776 0.01086 0.01185 0.32% Castro::initMFs() 1 0.006504 0.006939 0.00844 0.23% Castro::construct_new_source() 50 0.006492 0.007411 0.008063 0.22% main() 1 0.004507 0.007458 0.008057 0.22% Gravity::get_new_grav_vector() 11 0.002503 0.003486 0.004125 0.11% Amr::coarseTimeStep() 10 0.00201 0.002848 0.003436 0.09% Gravity::get_old_grav_vector() 10 0.001442 0.001971 0.002412 0.07% Castro::finalize_do_advance() 10 0.0005908 0.001057 0.001246 0.03% AmrLevel::FillPatch() 41 0.0007606 0.001015 0.00112 0.03% Castro::reset_internal_energy(MultiFab) 63 0.0002901 0.0003064 0.0003421 0.01% Amr::timeStep() 10 0.0001339 0.0001831 0.0003301 0.01% Castro::do_advance_ctu() 10 0.0001495 0.0001774 0.0002289 0.01% Castro::clean_state() 62 0.0001422 0.0001552 0.0001668 0.00% Castro::do_old_sources() 10 7.472e-05 0.0001078 0.0001428 0.00% StateDataPhysBCFunct::() 41 9.839e-05 0.0001147 0.0001288 0.00% FillPatchIterator::FillFromLevel0() 41 9.756e-05 0.0001078 0.0001271 0.00% FabArray::ParallelCopy() 41 7.825e-05 9.287e-05 0.0001049 0.00% Castro::construct_old_source() 50 3.758e-05 7.113e-05 9.337e-05 0.00% Castro::Castro() 1 4.824e-05 7.28e-05 9.197e-05 0.00% Castro::subcycle_advance_ctu() 10 4.708e-05 5.954e-05 8.788e-05 0.00% Castro::do_new_sources() 10 5.939e-05 7.213e-05 8.619e-05 0.00% Amr::FinalizeInit() 1 3.965e-06 1.45e-05 8.383e-05 0.00% FillPatchSingleLevel 41 5.843e-05 6.754e-05 7.655e-05 0.00% Castro::construct_old_gravity() 10 4.142e-05 5.242e-05 6.725e-05 0.00% Castro::apply_source_to_state() 20 4.363e-05 5.592e-05 6.65e-05 0.00% Castro::advance() 10 3.752e-05 5.075e-05 6.196e-05 0.00% Castro::construct_new_gravity() 10 3.094e-05 3.84e-05 5.318e-05 0.00% Amr::defBaseLevel() 1 4.072e-05 4.609e-05 5.185e-05 0.00% Castro::check_for_nan() 20 2.426e-05 2.705e-05 3.332e-05 0.00% Castro::expand_state() 10 1.852e-05 2.49e-05 3.132e-05 0.00% Castro::post_timestep() 10 1.398e-05 1.698e-05 2.318e-05 0.00% Castro::post_init() 1 1.434e-05 1.565e-05 1.692e-05 0.00% Castro::computeNewDt() 9 9.002e-06 1.023e-05 1.129e-05 0.00% Amr::InitializeInit() 1 2.322e-06 3.4e-06 7.026e-06 0.00% Castro::computeInitialDt() 2 3.464e-06 4.158e-06 5.687e-06 0.00% Amr::init() 1 1.795e-06 2.072e-06 2.322e-06 0.00% Amr::initialInit() 1 1.54e-06 1.775e-06 2.023e-06 0.00% Other 261 0.01522 0.01906 0.0215 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.685 3.688 3.689 100.00% Amr::coarseTimeStep() 10 3.506 3.506 3.506 95.05% Amr::timeStep() 10 3.493 3.493 3.494 94.73% Castro::advance() 10 3.476 3.477 3.478 94.29% Castro::subcycle_advance_ctu() 10 3.384 3.391 3.417 92.63% Castro::do_advance_ctu() 10 3.384 3.391 3.417 92.63% Castro::construct_ctu_hydro_source() 10 2.604 2.607 2.612 70.82% Gravity::make_radial_gravity() 21 0.3126 0.3194 0.3393 9.20% check_for_negative_density() 10 0.04935 0.2042 0.3337 9.05% AmrLevel::FillPatch() 41 0.2182 0.2313 0.2568 6.96% FillPatchIterator::Initialize 41 0.1839 0.197 0.2332 6.32% Gravity::get_new_grav_vector() 11 0.2099 0.2115 0.2128 5.77% Castro::construct_old_gravity() 10 0.1848 0.1916 0.2091 5.67% Gravity::get_old_grav_vector() 10 0.1839 0.1908 0.2084 5.65% Castro::initialize_do_advance() 10 0.1807 0.1888 0.1973 5.35% FillPatchIterator::FillFromLevel0() 41 0.1353 0.1516 0.196 5.31% FillPatchSingleLevel 41 0.1352 0.1514 0.1959 5.31% Castro::construct_new_gravity() 10 0.1879 0.1889 0.1899 5.15% FabArray::ParallelCopy() 41 0.1031 0.1186 0.166 4.50% Amr::init() 1 0.1628 0.1633 0.164 4.45% Castro::expand_state() 10 0.1215 0.1334 0.1513 4.10% Amr::initialInit() 1 0.1481 0.149 0.1497 4.06% FabArray::ParallelCopy_finish() 41 0.05593 0.07336 0.1292 3.50% Castro::clean_state() 62 0.1158 0.1191 0.1233 3.34% Amr::InitializeInit() 1 0.05839 0.09268 0.1226 3.32% Amr::defBaseLevel() 1 0.05839 0.09268 0.1226 3.32% Castro::do_old_sources() 10 0.0994 0.11 0.1142 3.09% Castro::initData() 1 0.04111 0.07517 0.1052 2.85% amrex::Copy() 193 0.06407 0.08505 0.09678 2.62% Castro::estTimeStep() 21 0.02331 0.05653 0.09228 2.50% Amr::FinalizeInit() 1 0.02647 0.05628 0.09054 2.45% Castro::initialize_advance() 10 0.05588 0.082 0.08928 2.42% FabArray::setVal() 143 0.05916 0.08039 0.08822 2.39% Castro::do_new_sources() 10 0.06476 0.07046 0.07469 2.02% Castro::computeTemp() 63 0.06374 0.06708 0.071 1.92% Castro::computeInitialDt() 2 0.002097 0.03201 0.06617 1.79% Castro::reset_internal_energy(MultiFab) 63 0.04572 0.04845 0.05262 1.43% Castro::reset_internal_energy(Fab) 1008 0.04543 0.04814 0.05227 1.42% Castro::normalize_species() 62 0.04567 0.04653 0.04796 1.30% FabArray::ParallelCopy_nowait() 41 0.03671 0.04518 0.04732 1.28% Castro::construct_new_source() 50 0.03234 0.035 0.03832 1.04% StateDataPhysBCFunct::() 41 0.02986 0.03274 0.03532 0.96% StateData::FillBoundary(geom) 41 0.02976 0.03263 0.03521 0.95% Castro::construct_new_gravity_source() 10 0.02585 0.02759 0.03026 0.82% Gravity::interpolate_monopole_grav() 21 0.0267 0.02705 0.02744 0.74% Amr::writePlotFile() 2 0.02497 0.02508 0.02546 0.69% Castro::post_init() 1 0.02331 0.02368 0.02382 0.65% Castro::finalize_do_advance() 10 0.01313 0.01696 0.02255 0.61% Castro::apply_source_to_state() 20 0.01255 0.0153 0.01681 0.46% FabArray::Saxpy() 20 0.0125 0.01524 0.01675 0.45% Castro::post_timestep() 10 0.01557 0.01598 0.01669 0.45% VisMF::Write(FabArray) 2 0.00943 0.01082 0.01544 0.42% Castro::check_for_nan() 20 0.01083 0.01201 0.01429 0.39% MultiFab::contains_nan() 20 0.0108 0.01198 0.01426 0.39% Castro::construct_old_source() 50 0.006538 0.01112 0.01252 0.34% Castro::construct_old_gravity_source() 10 0.0065 0.01105 0.01243 0.34% FabArray::setDomainBndry() 41 0.007057 0.009913 0.01224 0.33% Castro::Castro() 1 0.01023 0.01091 0.01202 0.33% Castro::computeNewDt() 9 0.008619 0.008636 0.00865 0.23% Castro::initMFs() 1 0.006504 0.006939 0.00844 0.23% Other 261 0.02523 0.03119 0.0353 0.96% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 38 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8655 KiB 8665 KiB 8668 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6813 KiB 6815 KiB 6817 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7129 KiB 7137 KiB 7140 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4584 KiB 4594 KiB 4625 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 224 KiB 241 KiB 271 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2825 KiB 2828 KiB 2828 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 216 KiB 220 KiB 234 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 42 KiB 51 KiB 73 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 73 KiB 73 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 64 KiB 66 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.03-7-g5b193594596a) finalized